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Aliases for AGAP4 Gene

Aliases for AGAP4 Gene

  • ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 4 2 3
  • ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 8 2 3
  • Centaurin, Gamma-Like Family, Member 1 2 3
  • Centaurin, Gamma-Like Family, Member 5 2 3
  • CTGLF1 3 4
  • CTGLF5 3 4
  • AGAP-4 3 4
  • AGAP8 3 4
  • MRIP2 3 4
  • Arf-GAP With GTPase, ANK Repeat And PH Domain-Containing Protein 8 3
  • Centaurin-Gamma-Like Family Member 1 4
  • Centaurin-Gamma-Like Family Member 5 4
  • ARF GTPase-Activating Protein 3
  • AGAP-8 3

External Ids for AGAP4 Gene

Previous HGNC Symbols for AGAP4 Gene

  • CTGLF1
  • AGAP8
  • CTGLF5

Previous GeneCards Identifiers for AGAP4 Gene

  • GC10M045643
  • GC10M046322
  • GC10M045375

Summaries for AGAP4 Gene

GeneCards Summary for AGAP4 Gene

AGAP4 (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 4) is a Protein Coding gene. GO annotations related to this gene include GTPase activator activity. An important paralog of this gene is ASAP3.

UniProtKB/Swiss-Prot for AGAP4 Gene

  • Putative GTPase-activating protein.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGAP4 Gene

Genomics for AGAP4 Gene

Regulatory Elements for AGAP4 Gene

Genomic Location for AGAP4 Gene

Chromosome:
10
Start:
45,825,592 bp from pter
End:
45,853,877 bp from pter
Size:
28,286 bases
Orientation:
Minus strand

Genomic View for AGAP4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AGAP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP4 Gene

Proteins for AGAP4 Gene

  • Protein details for AGAP4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96P64-AGAP4_HUMAN
    Recommended name:
    Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4
    Protein Accession:
    Q96P64

    Protein attributes for AGAP4 Gene

    Size:
    663 amino acids
    Molecular mass:
    73070 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Encoded by one of the numerous copies of centaurin gamma-like genes clustered in the q11 region of chromosome 10

neXtProt entry for AGAP4 Gene

Proteomics data for AGAP4 Gene at MOPED

Post-translational modifications for AGAP4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AGAP4 Gene

No data available for DME Specific Peptides for AGAP4 Gene

Domains & Families for AGAP4 Gene

Suggested Antigen Peptide Sequences for AGAP4 Gene

Graphical View of Domain Structure for InterPro Entry

Q96P64

UniProtKB/Swiss-Prot:

AGAP4_HUMAN :
  • Contains 1 Arf-GAP domain.
  • Belongs to the centaurin gamma-like family.
  • Contains 2 ANK repeats.
Domain:
  • Contains 1 Arf-GAP domain.
  • Contains 1 PH domain.
Family:
  • Belongs to the centaurin gamma-like family.
Similarity:
  • Contains 2 ANK repeats.
genes like me logo Genes that share domains with AGAP4: view

Function for AGAP4 Gene

Molecular function for AGAP4 Gene

UniProtKB/Swiss-Prot Function:
Putative GTPase-activating protein.

Gene Ontology (GO) - Molecular Function for AGAP4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IEA --
GO:0005515 protein binding --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with AGAP4: view

Phenotypes for AGAP4 Gene

GenomeRNAi human phenotypes for AGAP4:
genes like me logo Genes that share phenotypes with AGAP4: view

Animal Model Products

CRISPR Products

miRNA for AGAP4 Gene

miRTarBase miRNAs that target AGAP4

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AGAP4

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for AGAP4 Gene

Localization for AGAP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGAP4 Gene

Pathways & Interactions for AGAP4 Gene

SuperPathways for AGAP4 Gene

No Data Available

Interacting Proteins for AGAP4 Gene

Gene Ontology (GO) - Biological Process for AGAP4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0043547 positive regulation of GTPase activity IEA --
genes like me logo Genes that share ontologies with AGAP4: view

No data available for Pathways by source and SIGNOR curated interactions for AGAP4 Gene

Drugs & Compounds for AGAP4 Gene

No Compound Related Data Available

Transcripts for AGAP4 Gene

Unigene Clusters for AGAP4 Gene

ArfGAP with GTPase domain, ankyrin repeat and PH domain 4:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for AGAP4

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP4 Gene

No ASD Table

Relevant External Links for AGAP4 Gene

GeneLoc Exon Structure for
AGAP4
ECgene alternative splicing isoforms for
AGAP4

Expression for AGAP4 Gene

mRNA expression in normal human tissues for AGAP4 Gene

Protein differential expression in normal tissues from HIPED for AGAP4 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for AGAP4 Gene



SOURCE GeneReport for Unigene cluster for AGAP4 Gene Hs.656384

genes like me logo Genes that share expression patterns with AGAP4: view

Protein tissue co-expression partners for AGAP4 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for AGAP4 Gene

Orthologs for AGAP4 Gene

This gene was present in the common ancestor of animals.

Orthologs for AGAP4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CTGLF2 35
  • 98.18 (n)
  • 95.96 (a)
-- 36
  • 92 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 73 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 45 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 57 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 10 (a)
ManyToMany
-- 36
  • 63 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii agap1 36
  • 46 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta cenG1A 36
  • 26 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea cnt-2 36
  • 20 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
OneToMany
Species with no ortholog for AGAP4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for AGAP4 Gene

ENSEMBL:
Gene Tree for AGAP4 (if available)
TreeFam:
Gene Tree for AGAP4 (if available)

Paralogs for AGAP4 Gene

genes like me logo Genes that share paralogs with AGAP4: view

Variants for AGAP4 Gene

Sequence variations from dbSNP and Humsavar for AGAP4 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1656590 -- 45,846,200(-) TATGA(A/G)GCTCT intron-variant
rs1656596 -- 45,830,632(-) GGCAC(A/G)CACCT intron-variant
rs1667887 -- 45,839,354(+) GCAAG(G/T)TCAGT intron-variant
rs2917174 -- 45,850,550(+) CTGTA(C/T)AATAA intron-variant
rs3122237 -- 45,838,041(-) ATTGA(C/T)GGGCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for AGAP4 Gene

Variant ID Type Subtype PubMed ID
dgv251e1 CNV Complex 17122850
dgv252e1 CNV Complex 17122850
dgv253e1 CNV Complex 17122850
esv2750898 CNV Loss 17911159
dgv254e1 CNV Complex 17122850
essv18092 CNV CNV 17122850
nsv516485 CNV Gain+Loss 19592680
esv2750899 CNV Gain 17911159
nsv895114 CNV Gain 21882294
esv34875 CNV Gain 17911159
nsv8630 CNV Loss 18304495

Variation tolerance for AGAP4 Gene

Gene Damage Index Score: 1.98; 36.61% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AGAP4 Gene

HapMap Linkage Disequilibrium report
AGAP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AGAP4 Gene

Disorders for AGAP4 Gene

Relevant External Links for AGAP4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGAP4
genes like me logo Genes that share disorders with AGAP4: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGAP4 Gene

Publications for AGAP4 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets. (PMID: 25277244) Katsogiannou M. … Rocchi P. (Mol. Cell Proteomics 2014) 67
  3. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PMID: 22990118) Woods N.T. … Monteiro A.N. (Sci Signal 2012) 67
  4. Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. (PMID: 21248752) Varela I. … Futreal P.A. (Nature 2011) 67
  5. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y. … Kamatani N. (Nat. Genet. 2010) 67

Products for AGAP4 Gene

Sources for AGAP4 Gene

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