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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

AGAP2 Gene

protein-coding   GIFtS: 60
GCID: GC12M058118

ArfGAP with GTPase domain, ankyrin repeat and PH domain...

(Previous names: centaurin, gamma 1 )
(Previous symbol: CENTG1)
 Explore 10 diseases affiliated with
AGAP2 via our new
 Human Malady Compendium 
Biological research products
for AGAP2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 21 2     GTP-Binding And GTPase Activating Protein 22
CENTG11 2 3     Phosphatidylinositol-3-Kinase Enhancer2
PIKE2 3 5     Phosphoinositide 3-Kinase Enhancer2
Centaurin, Gamma 11 2     AGAP-23
Phosphatidylinositol 3-Kinase Enhancer2 3     Centaurin-Gamma-11
GGAP22 3     Cnt-G11
Arf GAP With GTP-Binding Protein-Like, ANK Repeat And PH Domains 22     KIAA01673
Arf-GAP With GTPase, ANK Repeat And PH Domain-Containing Protein 22     GTP-Binding And GTPase-Activating Protein 23
Cnt-G11     

External Ids:    HGNC: 169211   Entrez Gene: 1169862   Ensembl: ENSG000001354397   OMIM: 6054765   UniProtKB: Q994903   

Export aliases for AGAP2 gene to outside databases

Previous GC identifers: GC12M056406 GC12M055156


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for AGAP2:
The protein encoded by this gene belongs to the centaurin gamma-like family. It mediates anti-apoptotic effects of
nerve growth factor by activating nuclear phosphoinositide 3-kinase. It is overexpressed in cancer cells, and promotes
cancer cell invasion. Alternatively spliced transcript variants encoding different isoforms have been described for
this gene. (provided by RefSeq, Aug 2011)

UniProtKB/Swiss-Prot: AGAP2_HUMAN, Q99490
Function: GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Isoform 1
participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. It aids the coupling of
metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and
also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase. Isoform 2 does not stimulate PI3
kinase but may protect cells from apoptosis by stimulating Akt. It also regulates the adapter protein 1
(AP-1)-dependent trafficking of proteins in the endosomal system. It seems to be oncogenic. It is overexpressed in
cancer cells, prevents apoptosis and promotes cancer cell invasion

Gene Wiki entry for AGAP2 (CENTG1)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the AGAP2 gene promoter:
         AP-1   ATF-2   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): AGAP2 promoter sequence
   Search SABiosciences Chromatin IP Primers for AGAP2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat AGAP2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q14.1   Ensembl cytogenetic band:  12q14.1   HGNC cytogenetic band: 12q13.2

AGAP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
AGAP2 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M058118:  view genomic region     (about GC identifiers)

Start:
58,118,981 bp from pter      End:
58,135,940 bp from pter
Size:
16,960 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: AGAP2_HUMAN, Q99490 (See protein sequence)
Recommended Name: Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2  
Size: 1192 amino acids; 124674 Da
Subunit: Isoform 1 interacts with EPB41L1, PLCG1, NF2, HOMER1 and HOMER2 (By similarity). Isoform 2 interacts with
activated AKT1 in the presence of guanine nucleotides, and with the AP-1 complex
Subcellular location: Isoform 1: Cytoplasm. Nucleus
Subcellular location: Isoform 2: Cytoplasm
Sequence caution: Sequence=BAA11484.2; Type=Erroneous initiation;
3 PDB 3D structures from and Proteopedia for AGAP2:
2BMJ (3D)        2IWR (3D)        2RLO (3D)    
Secondary accessions: A8K9F7 O00578 Q548E0 Q8IWU3
Alternative splicing: 2 isoforms:  Q99490-1   Q99490-2   (Phosphorylated by FYN)

Explore the universe of human proteins at neXtProt for AGAP2: NX_Q99490

Post-translational modifications:

  • Isoform PIKE-A is phosphorylated at Tyr-682 and Tyr-774 by FYN, preventing its apoptotic cleavage1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q99490

  • AGAP2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001116244.1  NP_055585.1  

    ENSEMBL proteins: 
     ENSP00000328160   ENSP00000257897   ENSP00000449241   ENSP00000446683  
    Reactome Protein details: Q99490
    Human Recombinant Protein Products: 
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    Browse Proteins at Uscn

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ISS11136977
    GO:0005730nucleolus IDA--
    GO:0005739mitochondrion IDA--
    GO:0005829cytosol ----


    AGAP2 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    AGAP2 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR013684 MIRO-like
     IPR001849 Pleckstrin_homology
     IPR001164 ArfGAP
     IPR020683 Ankyrin_rpt-contain_dom
     IPR011993 PH_like_dom

    Graphical View of Domain Structure for InterPro Entry Q99490

    ProtoNet protein and cluster: Q99490

    4 Blocks protein families:
    IPB001164 HIV Rev interacting protein signature
    IPB001849 Pleckstrin-like
    IPB002110 Ankyrin repeat signature
    IPB013684 Miro-like


    UniProtKB/Swiss-Prot: AGAP2_HUMAN, Q99490
    Domain: G domain binds GTP and has GTPase activity
    Domain: Arf-GAP domain interacts with G domain and may regulate its GTPase activity
    Domain: Although both PH domains of isoforms 1 and 2 bind phospholipids, they differently regulate subcellular
    location. PH domain of isoform 1 directs the protein to the nucleus, but PH domain of isoform 2 directs it to the
    cytosol. PH domain of isoform 2 is required for binding to AP-1
    Similarity: Belongs to the centaurin gamma-like family
    Similarity: Contains 2 ANK repeats
    Similarity: Contains 1 Arf-GAP domain
    Similarity: Contains 1 PH domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: AGAP2_HUMAN, Q99490
    Function: GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Isoform 1
    participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. It aids the coupling of
    metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and
    also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase. Isoform 2 does not stimulate PI3
    kinase but may protect cells from apoptosis by stimulating Akt. It also regulates the adapter protein 1
    (AP-1)-dependent trafficking of proteins in the endosomal system. It seems to be oncogenic. It is overexpressed in
    cancer cells, prevents apoptosis and promotes cancer cell invasion
    Enzyme regulation: GAP activity is stimulated by phosphatidylinositol 4,5-bisphosphate (PIP2) and, to a lesser extent,
    by phosphatidylinositol 3,4,5-trisphosphate (PIP3). Phosphatidic acid potentiates PIP2 stimulation

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    hsa-miR-1321 hsa-miR-3194-5p hsa-miR-136 hsa-miR-520e hsa-miR-302d hsa-miR-1914* hsa-miR-513a-5p hsa-miR-624
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    Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
    GO:0005525GTP binding IEA--
    GO:0005543phospholipid binding IEA--
    GO:0008060ARF GTPase activator activity IEA--
    GO:0008270zinc ion binding IEA--


    AGAP2 for ontologies           About GeneDecksing


    5 GenomeRNAi human phenotypes for AGAP2:
     Altered focal adhesion (FA) or  Decreased Tat-dependent transc  Decreased Wnt reporter activit  Decreased p24 protein expressi 
     Increased gamma-H2AX phosphory 

    Animal Models:
         Mouse knock-out Agap2tm1.1Kye for AGAP2
         5 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Agap2):
     endocrine/exocrine gland  growth/size  homeostasis/metabolism  integument  liver/biliary system 

    AGAP2 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/6 super-pathways (see all 6About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Axon guidance
    Axon guidance1.00
    Developmental Biology0.69
    2Development HGF signaling pathway
    Apoptosis and survival_NGF signaling pathway0.25
    Apoptosis and survival NGF signaling pathway0.25
    3Trk receptor signaling mediated by PI3K and PLC-gamma
    Trk receptor signaling mediated by PI3K and PLC-gamma1.00
    4Endocytosis
    Endocytosis1.00
    5Netrin-1 signaling
    Netrin-1 signaling1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for AGAP2
        Apoptosis and survival NGF signaling pathway


    1 GeneGo (Thomson Reuters) Pathway for AGAP2
        Apoptosis and survival NGF signaling pathway

    2 BioSystems Pathways for AGAP2 
        Prolactin Signaling Pathway
    Trk receptor signaling mediated by PI3K and PLC-gamma

    3        Reactome Pathways for AGAP2
        Developmental Biology
    Netrin-1 signaling
    Axon guidance


    1         Kegg Pathway  (Kegg details for AGAP2):
        Endocytosis


    AGAP2 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for AGAP2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 19)

    5/23 Interacting proteins for AGAP2 (Q994902, 3 ENSP000003281604) via UniProtKB, MINT, STRING, and/or I2D (see all 23)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    STAT5AP422292, 3, ENSP000003412084MINT-7760983 MINT-7760966 MINT-7761049 I2D: score=1 STRING: ENSP00000341208
    INSRP062132, 3, ENSP000003038304MINT-8204673 MINT-8204689 I2D: score=2 STRING: ENSP00000303830
    HOMER1Q86YM73, ENSP000003343824I2D: score=4 STRING: ENSP00000334382
    EPB41L1Q9H4G03, ENSP000003371684I2D: score=3 STRING: ENSP00000337168
    HOMER2Q9NSB83, ENSP000003056324I2D: score=3 STRING: ENSP00000305632
    About this table

    Gene Ontology (GO): 5/12 biological process terms (GO ID links to tree view) (see all 12):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001934positive regulation of protein phosphorylation ----
    GO:0007264small GTPase mediated signal transduction IEA--
    GO:0007411axon guidance TAS--
    GO:0015031protein transport IEA--
    GO:0032312regulation of ARF GTPase activity IEA--


    AGAP2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for AGAP2

    10/13 HMDB Compounds for AGAP2 (see all 13)    About this table
    CompoundSynonyms CAS #PubMed Ids
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--
    PA(16:0/16:0)Dipalmitoylphosphatidic acid (see all 25)7091-44-3--
    PA(16:0/18:1(11Z))PA(16:0/18:1n7) (see all 10)----
    PA(16:0/18:1(9Z))PA(16:0/18:1n9) (see all 10)----
    PA(16:0/18:2(9Z,12Z))PA(34:2) (see all 10)----
    PA(16:0e/18:0)2-octadecanoyl-1-hexadecyl-sn-glycero-3-phosphate ;PA(o-16:0/18:0) ----
    PA(18:0/18:2(9Z,12Z))PA(36:2) (see all 10)----
    PA(18:1(11Z)/18:1(11Z))PA(36:2) (see all 10)----
    PA(18:1(11Z)/18:1(9Z))PA(36:2) (see all 10)----
    PA(18:1(9Z)/18:1(11Z))PA(36:2) (see all 10)----
    Search CenterWatch for drugs/clinical trials and news about AGAP2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for AGAP2 gene (2 alternative transcripts): 
    NM_001122772.2  NM_014770.3  

    Unigene Cluster for AGAP2:

    ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
    Hs.302435  [show with all ESTs]
    Unigene Representative Sequence: NM_001122772
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000328568(uc001spq.3 uc001spp.3) ENST00000257897(uc001spr.3)
    ENST00000547588 ENST00000549129

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    Additional cDNA sequence: 

    AF384128.1 AF413077.1 AK122827.1 AK292672.1 AY128689.1 BC028020.1 D79989.1 

    6 DOTS entries:

    DT.110116  DT.100781647  DT.99999099  DT.100727113  DT.92428865  DT.97843575 

    24/67 AceView cDNA sequences (see all 67):

    AL120358 AF384128 NM_014770 BQ935205 BU198063 AL560115 BC028020 AA939069 
    D79989 AA772779 CR625050 AI948875 AF413077 BU198064 AK122827 AL134787 
    AW016402 AI372021 BE551002 BV205580 AI708908 BX105563 AL118974 BE670674 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for AGAP2    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b · 20c
    SP1:                                                                                                                                          
    SP2:                                                                                                                                          
    SP3:        -     -                                                                             -                                             


    ECgene alternative splicing isoforms for AGAP2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    AGAP2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GGGATGGGGG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See AGAP2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for AGAP2

    SOURCE GeneReport for Unigene cluster: Hs.302435

    UniProtKB/Swiss-Prot: AGAP2_HUMAN, Q99490
    Tissue specificity: Isoform 1 is brain-specific. Isoform 2 is ubiquitously expressed, with highest levels in brain and
    heart

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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for AGAP2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for AGAP2 gene from 3/17 species (see all 17)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia AGAP26
    --
    66(a)
    1 ↔ 1
    2(66469382-66556083)
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1537791 zgc:153779 60.37(n)
    59.65(a)
      565109  NM_001080018.1  NP_001073487.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta cenG1A6
    centaurin gamma 1A
    32(a)
    1 → many
    2L(13835567-13898715)


    ENSEMBL Gene Tree for AGAP2 (if available)
    TreeFam Gene Tree for AGAP2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for AGAP2 gene
    AGAP52  AGAP62  ASAP12  ACAP22  ARAP32  GIT22  ACAP32  ARAP12  
    ASAP22  AGAP32  GIT12  ARAP22  AGAP42  AGAP12  AGAP82  ACAP12  
    AGAP72  AGAP102  AGAP92  ASAP32  
    17 SIMAP similar genes for AGAP2 using alignment to 4 protein entries:     AGAP2_HUMAN (see all proteins):
    CENTG2    AGAP1    DKFZp761E2216    CENTG3    AGAP3    AGAP10
    AGAP11    CTGLF11P    ARFGAP3    AGAP8    AGAP4    AGAP5
    AGAP9    AGAP6    AGAP7    FLJ00312    ARFGAP1

    AGAP2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/296 NCBI SNPs in AGAP2 are shown (see all 296    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs779039521,2
    --55154896(+) GCAATT/GCTACC 2 -- ds50011Minor allele frequency- G:0.01NA 120
    rs128319581,2
    H--55155780(+) ATGCCC/ATGACC 2 -- ut314Minor allele frequency- A:0.00NS EA 418
    rs2000440651,2
    C--55155980(-) CCGGTC/TTNNNN 2 -- ut310--------
    rs118313011,2
    H--55155981(+) AAAAGA/CCCGGA 2 -- ut31 trp30--------
    rs1140019951,2
    C,F,--55156448(+) AGCCCG/ACTCCT 2 -- ut311Minor allele frequency- A:0.04WA 118
    rs2385211,2
    F--55157383(+) TGCGGA/CCCTGG 4 G V mis1 ese33Minor allele frequency- C:0.27NA 62
    rs1121506501,2
    --55159477(+) CACTTA/GGCAAT 2 -- int10--------
    rs122967501,2
    C,F,--55159662(+) ggcatG/Agtggc 2 -- int14Minor allele frequency- A:0.50NA 8
    rs733382191,2
    C,--55159937(+) CAGCGG/AGGCTG 2 -- int11Minor allele frequency- A:0.50WA 2
    rs26500481,2
    C,H--55160488(-) AGCCCT/CAAAAT 2 -- int16Minor allele frequency- C:0.00NS EA NA 414

    HapMap Linkage Disequilibrium report for AGAP2 (58118981 - 58135940 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for AGAP2: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing AGAP2
    DNA2.0 Custom Variant and Variant Library Synthesis for AGAP2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    AGAP2 for disorders           About GeneDecksing

    OMIM gene information: 605476    OMIM disorders: --

    10 diseases for AGAP2:    About MalaCards
    anisakiasis    diphyllobothriasis    lymphosarcoma    myxoma
    prostate cancer, progression of    prostate cancer    prostatitis    glioblastoma
    malaria    neuronitis

    3 diseases from the University of Copenhagen DISEASES database for AGAP2:
    Diphyllobothriasis     Lymphosarcoma     Anisakiasis

    1 Novoseek disease relationship for AGAP2 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    cancer 28.5 3 19318351 (1), 20419274 (1), 17367500 (1)

    Human Genome Epidemiology (HuGE) Navigator: AGAP2 (2 documents)

    Export disorders for AGAP2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for AGAP2 gene, integrated from 9 sources (see all 41):
    (articles sorted by number of sources associating them with AGAP2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The Arf GAPs AGAP1 and AGAP2 distinguish between the adaptor protein complexes AP-1 and AP-3. (PubMed id 16079295)1, 2, 9 Nie Z.... Randazzo P.A. (2005)
    2. Genetic alteration and expression of the phosphoinositol-3-kinase/Akt pathway genes PIK3CA and PIKE in human glioblastomas. (PubMed id 16150119)1, 2, 9 Knobbe C.B.... Reifenberger G. (2005)
    3. The centaurin gamma-1 GTPase-like domain functions as an NTPase. (PubMed id 17037982)1, 2, 9 Soundararajan M....Doyle D.A. (2007)
    4. PIKE (phosphatidylinositol 3-kinase enhancer)-A GTPase stimulates Akt activity and mediates cellular invasion. (PubMed id 14761976)1, 2, 9 Ahn J.-Y.... Ye K. (2004)
    5. Split pleckstrin homology domain-mediated cytoplasmic-nuclear localization of PI3-kinase enhancer GTPase. (PubMed id 18371979)1, 2 Yan J....Zhang M. (2008)
    6. Src-family tyrosine kinase fyn phosphorylates phosphatidylinositol 3-kinase enhancer-activating Akt, preventing its apoptotic cleavage and promoting cell survival. (PubMed id 16841086)1, 2 Tang X....Ye K. (2007)
    7. Phosphoinositol lipids bind to phosphatidylinositol 3 (PI3)-kinase enhancer GTPase and mediate its stimulatory effect on PI3-kinase and Akt signalings. (PubMed id 16263930)1, 2 Hu Y.... Ye K. (2005)
    8. PIKE-A is amplified in human cancers and prevents apoptosis by up- regulating Akt. (PubMed id 15118108)1, 2 Ahn J.-Y.... Ye K. (2004)
    9. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    10. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 116986 HGNC: 16921 AceView: CENTG1 Ensembl:ENSG00000135439 euGenes: HUgn116986
    ECgene: AGAP2 Kegg: 116986 H-InvDB: AGAP2

    (According to HUGE)
    About This Section
    HUGE: KIAA0167

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for AGAP2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for AGAP2 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for AGAP2 gene:
    Search GeneIP for patents involving AGAP2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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