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Aliases for AGAP12P Gene

Aliases for AGAP12P Gene

  • ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 12, Pseudogene 2 3 5
  • Centaurin, Gamma-Like Family, Member 12 Pseudogene 2 3
  • CTGLF12P 3

External Ids for AGAP12P Gene

Previous HGNC Symbols for AGAP12P Gene

  • CTGLF12P

Summaries for AGAP12P Gene

GeneCards Summary for AGAP12P Gene

AGAP12P (ArfGAP With GTPase Domain, Ankyrin Repeat And PH Domain 12, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGAP12P Gene

Genomics for AGAP12P Gene

Regulatory Elements for AGAP12P Gene

Enhancers for AGAP12P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F047164 1.2 Ensembl ENCODE 5.6 +865.5 865543 3.9 CTCF MAX CEBPG ZNF316 ZNF157 NFYB NFE2 FOS HLF BHLHE40 GLUD1P2 AGAP12P LOC105378291 PIR48231
GH10F048251 1.1 Ensembl ENCODE 4.8 -220.1 -220104 1.0 FEZF1 EBF1 REST ZIC2 ZNF843 ZNF664 SMARCA4 SCRT2 GLIS1 WT1 AGAP12P FRMPD2 PTPN20CP
GH10F048253 1 ENCODE 4.8 -222.6 -222621 0.7 JUN PTPN20CP AGAP12P FRMPD2
GH10F048466 1.3 Ensembl ENCODE 4.5 -437.7 -437737 5.2 HDGF PKNOX1 ARNT FEZF1 YY1 ZNF766 CBX5 KLF13 ZNF263 SP3 ARHGAP22 AGAP12P BMS1P7 ENSG00000279822 ARHGAP22-IT1
GH10F048257 0.5 ENCODE 4.1 -226.4 -226444 1.2 JUND KDM1A AGAP12P FRMPD2 PTPN20CP
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around AGAP12P on UCSC Golden Path with GeneCards custom track

Genomic Location for AGAP12P Gene

Chromosome:
10
Start:
48,009,873 bp from pter
End:
48,031,640 bp from pter
Size:
21,768 bases
Orientation:
Minus strand

Genomic View for AGAP12P Gene

Genes around AGAP12P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGAP12P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGAP12P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP12P Gene

Proteins for AGAP12P Gene

Post-translational modifications for AGAP12P Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGAP12P Gene

Domains & Families for AGAP12P Gene

Gene Families for AGAP12P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AGAP12P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGAP12P Gene

Function for AGAP12P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGAP12P Gene

Localization for AGAP12P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGAP12P Gene

Pathways & Interactions for AGAP12P Gene

SuperPathways for AGAP12P Gene

No Data Available

Interacting Proteins for AGAP12P Gene

Gene Ontology (GO) - Biological Process for AGAP12P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGAP12P Gene

Transcripts for AGAP12P Gene

mRNA/cDNA for AGAP12P Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP12P Gene

No ASD Table

Relevant External Links for AGAP12P Gene

GeneLoc Exon Structure for
AGAP12P
ECgene alternative splicing isoforms for
AGAP12P

Expression for AGAP12P Gene

NURSA nuclear receptor signaling pathways regulating expression of AGAP12P Gene:

AGAP12P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AGAP12P Gene

Orthologs for AGAP12P Gene

Evolution for AGAP12P Gene

ENSEMBL:
Gene Tree for AGAP12P (if available)
TreeFam:
Gene Tree for AGAP12P (if available)

No data available for Orthologs for AGAP12P Gene

Paralogs for AGAP12P Gene

No data available for Paralogs for AGAP12P Gene

Variants for AGAP12P Gene

Sequence variations from dbSNP and Humsavar for AGAP12P Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs111242782 -- 48,022,059(+) CTAGA(C/T)ACTGG intron-variant
rs111383391 -- 48,018,931(+) TCAAA(A/G)AAAAA intron-variant
rs111580637 -- 48,023,561(+) CAGGC(A/G)AATGG intron-variant
rs112037430 -- 48,018,877(+) AGCCG(A/G)GTTCG intron-variant
rs112874775 -- 48,011,665(+) AGGAG(C/G)AATGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AGAP12P Gene

Variant ID Type Subtype PubMed ID
dgv12e203 CNV loss 21179565
esv24863 CNV gain+loss 19812545
esv33214 CNV loss 17666407
nsv1042677 CNV loss 25217958
nsv437672 CNV loss 16327808
nsv469669 CNV gain+loss 16826518
nsv820931 CNV deletion 20802225
nsv831863 CNV gain 17160897
nsv947974 CNV duplication 23825009
nsv975693 CNV duplication 23825009
nsv975696 CNV duplication 23825009
nsv982763 CNV duplication 23825009

Relevant External Links for AGAP12P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGAP12P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AGAP12P Gene

Disorders for AGAP12P Gene

Relevant External Links for AGAP12P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGAP12P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGAP12P

No disorders were found for AGAP12P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGAP12P Gene

Publications for AGAP12P Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for AGAP12P Gene

Sources for AGAP12P Gene

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