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Aliases for AGAP1-IT1 Gene

Subcategory (RNA class) for AGAP1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AGAP1-IT1 Gene

  • AGAP1 Intronic Transcript 1 2 3 5
  • AGAP1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for AGAP1-IT1 Gene

Previous GeneCards Identifiers for AGAP1-IT1 Gene

  • GC02P236416

Summaries for AGAP1-IT1 Gene

GeneCards Summary for AGAP1-IT1 Gene

AGAP1-IT1 (AGAP1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AGAP1-IT1 Gene

Genomics for AGAP1-IT1 Gene

Regulatory Elements for AGAP1-IT1 Gene

Enhancers for AGAP1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F235499 1 Ensembl ENCODE 11.3 -2.8 -2786 3.9 RNF2 HLF JUN BHLHE40 FEZF1 ARID1B OSR2 JUND SMARCA4 PATZ1 AGAP1-IT1 AGAP1
GH02F235504 1.4 Ensembl ENCODE 11.3 +0.5 473 1.8 MLX ARID4B THRB ZNF48 RAD21 RARA YY1 CREM MIXL1 THAP11 AGAP1-IT1 PIR48120
GH02F235506 0.7 Ensembl ENCODE 11.3 +2.6 2572 1.6 PKNOX1 ZNF146 MAFG CEBPB MNT ZIC2 OSR2 RAD51 ZNF316 GATA3 AGAP1-IT1 PIR48120
GH02F235510 1.1 Ensembl ENCODE 8.8 +8.6 8593 5.3 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF143 FOS SP5 AGAP1-IT1 PIR48120
GH02F235517 0.9 Ensembl ENCODE 8.6 +14.0 13995 1.3 ZNF121 PKNOX1 NR2F2 AGAP1-IT1 PIR48120
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around AGAP1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AGAP1-IT1 Gene

Chromosome:
2
Start:
235,504,628 bp from pter
End:
235,507,566 bp from pter
Size:
2,939 bases
Orientation:
Plus strand

Genomic View for AGAP1-IT1 Gene

Genes around AGAP1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AGAP1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AGAP1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AGAP1-IT1 Gene

Proteins for AGAP1-IT1 Gene

Post-translational modifications for AGAP1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AGAP1-IT1 Gene

Domains & Families for AGAP1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AGAP1-IT1 Gene

Function for AGAP1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AGAP1-IT1 Gene

Localization for AGAP1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AGAP1-IT1 Gene

Pathways & Interactions for AGAP1-IT1 Gene

SuperPathways for AGAP1-IT1 Gene

No Data Available

Interacting Proteins for AGAP1-IT1 Gene

Gene Ontology (GO) - Biological Process for AGAP1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AGAP1-IT1 Gene

Transcripts for AGAP1-IT1 Gene

mRNA/cDNA for AGAP1-IT1 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AGAP1-IT1 Gene

AGAP1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AGAP1-IT1 Gene

No ASD Table

Relevant External Links for AGAP1-IT1 Gene

GeneLoc Exon Structure for
AGAP1-IT1
ECgene alternative splicing isoforms for
AGAP1-IT1

Expression for AGAP1-IT1 Gene

mRNA expression in normal human tissues for AGAP1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AGAP1-IT1 Gene

This gene is overexpressed in Liver (x7.4) and Colon - Transverse (x4.1).

SOURCE GeneReport for Unigene cluster for AGAP1-IT1 Gene:

Hs.684184
genes like me logo Genes that share expression patterns with AGAP1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AGAP1-IT1 Gene

Orthologs for AGAP1-IT1 Gene

Evolution for AGAP1-IT1 Gene

ENSEMBL:
Gene Tree for AGAP1-IT1 (if available)
TreeFam:
Gene Tree for AGAP1-IT1 (if available)

No data available for Orthologs for AGAP1-IT1 Gene

Paralogs for AGAP1-IT1 Gene

No data available for Paralogs for AGAP1-IT1 Gene

Variants for AGAP1-IT1 Gene

Sequence variations from dbSNP and Humsavar for AGAP1-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10176787 -- 235,507,009(+) GGAGC(C/T)CGTGG intron-variant, nc-transcript-variant
rs10178301 -- 235,505,039(+) TGGGG(G/T)ACTCT intron-variant, upstream-variant-2KB
rs10202576 -- 235,505,078(+) CCATC(C/T)CTGTG intron-variant, upstream-variant-2KB
rs10469598 -- 235,507,557(+) AAATC(C/T)GTAAT intron-variant, nc-transcript-variant
rs10469600 -- 235,508,052(+) tcctc(C/T)gctgg intron-variant

Relevant External Links for AGAP1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AGAP1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AGAP1-IT1 Gene

Disorders for AGAP1-IT1 Gene

Relevant External Links for AGAP1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AGAP1-IT1

No disorders were found for AGAP1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AGAP1-IT1 Gene

Publications for AGAP1-IT1 Gene

No publications were found for AGAP1-IT1 Gene.

Products for AGAP1-IT1 Gene

Sources for AGAP1-IT1 Gene

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