AFM Gene
protein-coding GIFtS : 51
GCID: GC04 P074336
afamin
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Aliasesfor AFM gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Afamin 1 Alpha-Alb3 ALB21 2 3 5 Alpha-Albumin1 ALBA1 2 3 5 Alpha-Alb3 ALF2 Alpha-Albumin1
Export aliases for AFM gene to outside databases Previous GC identifers: GC04P074587 GC04P074748 GC04P074813 GC04P074712 GC04P074566 GC04P070158
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Summariesfor AFM gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for AFM : This gene is a member of the albumin gene family, which is comprised of four genes that localize to chromosome 4 in a tandem arrangement. These four genes encode structurally-related serum transport proteins that are known to be evolutionarily related. The protein encoded by this gene is regulated developmentally, expressed in the liver and secreted into the bloodstream. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 Function : Vitamin E binding protein. May transport vitamin E in body fluids under conditions where the lipoproteinsystem is not sufficient. May be involved in the regulation and transport of vitamin E at the blood-brain barrier (By similarity) Gene Wiki entry for AFM (Afamin)
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Genomic Viewsfor AFM gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000004.11 NC_018915.1 NT_022778.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the AFM gene promoter: C/EBPbeta FOXO3 CUTL1 FOXO3b Evi-1 Nkx6-1 FOXO3a MRF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for AFM Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat AFM
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4q13.3 Ensembl cytogenetic band: 4q13.3 HGNC cytogenetic band: 4q13.3 AFM Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04P074336: view genomic region
(about GC identifiers )
Start:
74,347,400 bp from pter
End:
74,369,718 bp from pter
Size:
22,319 bases
Orientation:
plus strand
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Proteinsfor AFM gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 (See
protein sequence )Recommended Name: Afamin precursor Size : 599 amino acids; 69069 Da
Subcellular location : Secreted
Secondary accessions : A8K3E1 Q32MR3 Q4W5C5Explore the universe of human proteins at neXtProt for AFM: NX_P43652 Post-translational modifications:
N-glycosylated; more than 90% of the glycans are sialylated1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P43652 AFM Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001124.1 ENSEMBL proteins: ENSP00000226355 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
AFM for ontologies About GeneDecksing AFM Antibody Products: Assay Products for AFM:
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Protein
Domains / Familiesfor AFM gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
AFM for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry P43652 ProtoNet protein and cluster: P43652
1 Blocks protein family : IPB000264 Serum albumin family UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 Similarity : Belongs to the ALB/AFP/VDB familySimilarity : Contains 3 albumin domains
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Functionfor AFM gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 Function : Vitamin E binding protein. May transport vitamin E in body fluids under conditions where the lipoproteinsystem is not sufficient. May be involved in the regulation and transport of vitamin E at the blood-brain barrier (By similarity)
Genatlas biochemistry entry for AFM : afamin,87kDa,albumin superfamily Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for AFM (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for AFMOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: AFM (NM_001133 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for AFM Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat AFM
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for AFM
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
AFM for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for AFM :Animal Models: 4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Afm) :
AFM for phenotypes About GeneDecksing
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Pathways & Interactionsfor AFM gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for AFM Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
AFM for ontologies About GeneDecksing
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Drugs & Compoundsfor AFM gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
AFM for compounds About GeneDecksing Browse Tocris compounds for AFM 3 Novoseek chemical compound relationships for AFM gene About this table
Search CenterWatch for drugs/clinical trials and news about AFM / AFAM
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Transcriptsfor AFM gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for AFM gene: NM_001133.2 Unigene Cluster for AFM:
Afamin Hs.168718 [show with all ESTs ] Unigene Representative Sequence: NM_001133 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000226355 (uc003hhb.3 ) ENST00000505794 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for AFM (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for AFMOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: AFM (NM_001133 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for AFM Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat AFM
Additional cDNA sequence: AK290556.1 BC109020.1 BC109021.1 L35498.1
6 DOTS entries : DT.208928 DT.202804
DT.75100220 DT.91948823 DT.92422309 DT.92422310 24/31 AceView cDNA sequences (see all 31 ):
L35486 BX103962 AI247575 L35497 CB157386 BX110719 AW235536 BF197337 NM_001133 BF434245 AA878846 CB162042 AH003117 T67570 AW051948 AA706914 L35498 AI492289 AI671722 L32140 T67409 AI670879 AV694104 BF511963 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for AFM About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14 ^ 15 ^ 16 SP1 :       -             -                       SP2 :                                         SP3 :                                         SP4 :                         -                
ECgene alternative splicing isoforms for AFM
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Expression for AFM gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section AFM expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AACTCACAGA
About this image AFM expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See AFM Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for AFM SOURCE GeneReport for Unigene cluster: Hs.168718 UniProtKB/Swiss-Prot: AFAM_HUMAN, P43652 Tissue specificity : High level detected in plasma but also in extravascular fluids such as follicular and cerebrospinalfluids (at protein level) SABiosciences Custom PCR Arrays for AFM Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for AFMBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat AFM QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat AFM QIAGEN QuantiFast Probe-based Assays in human , mouse , rat AFM In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for AFM
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Orthologsfor AFM gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for AFM gene from 4/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for AFM (if available)TreeFam Gene Tree for AFM (if available)
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Paralogsfor AFM gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for AFM gene ALB 2 GC 2 AFP 2 2 SIMAP similar genes for AFM using alignment to 1 protein entry: AFAM_HUMAN :AFP ALB
AFM for paralogs About GeneDecksing
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Genomic Variantsfor AFM gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing AFM
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Disorders
/ Diseasesfor AFM gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
AFM for disorders About GeneDecksing
OMIM gene information: 104145
OMIM disorders : --10 diseases for AFM : About MalaCards congenital disorder of glycosylation squamous papillomatosis trigonitis squamous cell carcinoma down syndrome endometriosis ovarian cancer peritonitis carcinoma neuronitis 2 diseases from the University of Copenhagen DISEASES database for AFM :Squamous papillomatosis Trigonitis Export disorders for AFM gene to outside databases
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Publicationsfor AFM gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for AFM gene, integrated from 9 sources (see all 40 ): (articles sorted by number of sources associating them with AFM) Utopia : connect your pdf to the dynamic world of online information
Afamin is a new member of the albumin, alpha-fetoprotein, and vitamin D-binding protein gene family. (PubMed id 7517938) 1 , 2 , 3, 9 Lichenstein H.S....Zukowski M.M. (1994) Afamin is a novel human vitamin E-binding glycoprotein characterization and in vitro expression. (PubMed id 15952736) 1 , 2 , 9 Jerkovic L....Dieplinger H. (2005) Afamin is synthesized by cerebrovascular endothelial cells and mediates alpha-tocopherol transport across an in vitro model of the blood-brain barrier. (PubMed id 19046407) 1 , 2 , 9 Kratzer I....Sattler W. (2009) Characterization of the vitamin E-binding properties of human plasma afamin. (PubMed id 12463752) 1 , 2 , 9 Voegele A.F....Dieplinger H. (2002) Complete structure of the human alpha-albumin gene, a new member of the serum albumin multigene family. (PubMed id 8755513) 1 , 2 , 9 Nishio H. and Dugaiczyk A. (1996) Identification of rat alpha-albumin and cDNA cloning of its human ortholog. (PubMed id 7875606) 1 , 2 , 9 Allard D.... Belanger L. (1995) Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PubMed id 16740002) 1 , 2 Ramachandran P....Loo J.A. (2006) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952) 1 , 2 Liu T.... Smith R.D. (2005) Screening for N-glycosylated proteins by liquid chromatography mass spectrometry. (PubMed id 14760718) 1 , 2 Bunkenborg J.... Wisniewski J.R. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004)
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External Searches for AFM gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing AFM gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing AFM gene
(According to HUGE )
About This Section --
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Specialized Databases showing AFM gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for AFM Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for AFM gene: Search GeneIP for patents involving AFM GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor AFM gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for AFM OriGene shRNA RFP for AFM OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for AFM OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for AFM Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for AFM OriGene 3'-UTR Clone for AFM OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for AFM OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for AFM Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for AFM OriGene Custom Protein Services for AFM OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat AFM QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing AFM QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat AFM QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat AFM QIAGEN QuantiFast Probe-based Assays in human , mouse , rat AFM QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat AFM
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for AFM
ThermoFisher Antibodies for AFM
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat AFM
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