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Aliases for AFG3L1P Gene

Aliases for AFG3L1P Gene

  • AFG3 Like Matrix AAA Peptidase Subunit 1, Pseudogene 2 3
  • AFG3 Like AAA ATPase 1, Pseudogene 2 3
  • AFG3-Like AAA ATPase 1, Pseudogene 3 5
  • AFG3 ATPase Family Gene 3-Like 1 (S. Cerevisiae), Pseudogene 2
  • AFG3 ATPase Family Member 3-Like 1, Pseudogene 3
  • AFG3 ATPase Family Gene 3-Like 1, Pseudogene 3
  • AFG3 (ATPase Family Gene 3, Yeast)-Like 1 3
  • AFG3L1 3
  • AFG3 3

External Ids for AFG3L1P Gene

Previous HGNC Symbols for AFG3L1P Gene

  • AFG3
  • AFG3L1

Previous GeneCards Identifiers for AFG3L1P Gene

  • GC16P090039
  • GC16P090041

Summaries for AFG3L1P Gene

GeneCards Summary for AFG3L1P Gene

AFG3L1P (AFG3 Like Matrix AAA Peptidase Subunit 1, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFG3L1P Gene

Genomics for AFG3L1P Gene

Regulatory Elements for AFG3L1P Gene

Promoters for AFG3L1P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around AFG3L1P on UCSC Golden Path with GeneCards custom track

Genomic Location for AFG3L1P Gene

Chromosome:
16
Start:
89,972,580 bp from pter
End:
90,002,161 bp from pter
Size:
29,582 bases
Orientation:
Plus strand

Genomic View for AFG3L1P Gene

Genes around AFG3L1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFG3L1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFG3L1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFG3L1P Gene

Proteins for AFG3L1P Gene

Post-translational modifications for AFG3L1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFG3L1P Gene

Domains & Families for AFG3L1P Gene

Gene Families for AFG3L1P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AFG3L1P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AFG3L1P Gene

Function for AFG3L1P Gene

genes like me logo Genes that share phenotypes with AFG3L1P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFG3L1P Gene

Localization for AFG3L1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AFG3L1P Gene

Pathways & Interactions for AFG3L1P Gene

SuperPathways for AFG3L1P Gene

No Data Available

Interacting Proteins for AFG3L1P Gene

Gene Ontology (GO) - Biological Process for AFG3L1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFG3L1P Gene

Drugs & Compounds for AFG3L1P Gene

No Compound Related Data Available

Transcripts for AFG3L1P Gene

Unigene Clusters for AFG3L1P Gene

AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AFG3L1P Gene

No ASD Table

Relevant External Links for AFG3L1P Gene

GeneLoc Exon Structure for
AFG3L1P
ECgene alternative splicing isoforms for
AFG3L1P

Expression for AFG3L1P Gene

mRNA expression in normal human tissues for AFG3L1P Gene

SOURCE GeneReport for Unigene cluster for AFG3L1P Gene Hs.534773

genes like me logo Genes that share expression patterns with AFG3L1P: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for AFG3L1P Gene

Orthologs for AFG3L1P Gene

Evolution for AFG3L1P Gene

ENSEMBL:
Gene Tree for AFG3L1P (if available)
TreeFam:
Gene Tree for AFG3L1P (if available)

No data available for Orthologs for AFG3L1P Gene

Paralogs for AFG3L1P Gene

No data available for Paralogs for AFG3L1P Gene

Variants for AFG3L1P Gene

Sequence variations from dbSNP and Humsavar for AFG3L1P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs3803683 -- 89,993,873(-) TGAGC(A/G)CTGCC nc-transcript-variant
rs3803684 -- 89,979,965(-) CTGTT(A/G)TTAGG intron-variant
rs3923703 -- 89,975,895(+) CACAG(C/T)CTTTA intron-variant
rs4408545 -- 89,977,620(+) CACAC(C/T)TCACC intron-variant, nc-transcript-variant
rs4238832 -- 89,983,853(+) AGTTC(C/T)GGAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AFG3L1P Gene

Variant ID Type Subtype PubMed ID
nsv428331 CNV Gain+Loss 18775914
dgv3009n71 CNV Loss 21882294
nsv907429 CNV Loss 21882294
dgv3015n71 CNV Loss 21882294
nsv907443 CNV Loss 21882294
nsv907445 CNV Loss 21882294
nsv457626 CNV Loss 19166990
nsv471119 CNV Loss 18288195
nsv482951 CNV Loss 15286789
nsv471120 CNV Gain 18288195
esv2136699 CNV Deletion 18987734
esv3689 CNV Deletion 18987735
nsv103116 CNV Loss 16902084
esv2664835 CNV Deletion 23128226
nsv103059 CNV Insertion 16902084
dgv3016n71 CNV Loss 21882294

Relevant External Links for AFG3L1P Gene

HapMap Linkage Disequilibrium report
AFG3L1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AFG3L1P Gene

Disorders for AFG3L1P Gene

Relevant External Links for AFG3L1P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AFG3L1P

No disorders were found for AFG3L1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFG3L1P Gene

Publications for AFG3L1P Gene

  1. Molecular and functional analyses of the human and mouse genes encoding AFG3L1, a mitochondrial metalloprotease homologous to the human spastic paraplegia protein. (PMID: 11549317) Kremmidiotis G. … Callen D.F. (Genomics 2001) 2 3 23 67
  2. Chromosomal locations of three human nuclear genes (RPSM12, TUFM, and AFG3L1) specifying putative components of the mitochondrial gene expression apparatus. (PMID: 9545647) Shah Z.H. … Jacobs H.T. (Genomics 1998) 2 3 23
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. (PMID: 21555518) Warnatz H.J. … Yaspo M.L. (J. Biol. Chem. 2011) 3
  5. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3

Products for AFG3L1P Gene

Sources for AFG3L1P Gene

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