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Aliases for AFF2-IT1 Gene

Subcategory (RNA class) for AFF2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for AFF2-IT1 Gene

  • AFF2 Intronic Transcript 1 2 3 5
  • AFF2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for AFF2-IT1 Gene

Previous GeneCards Identifiers for AFF2-IT1 Gene

  • GC00U933111
  • GC0XP147629

Summaries for AFF2-IT1 Gene

GeneCards Summary for AFF2-IT1 Gene

AFF2-IT1 (AFF2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFF2-IT1 Gene

Genomics for AFF2-IT1 Gene

Regulatory Elements for AFF2-IT1 Gene

Enhancers for AFF2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF148564 0.2 Ensembl 0.3 +17.7 17723 0.4 ZNF146 AFF2-IT1 RN7SKP267
GH0XF148562 0.7 Ensembl 0.3 +16.2 16223 1.0 ZNF585B AFF2-IT1 RN7SKP267
GH0XF148501 0.2 ENCODE 0.2 -45.5 -45500 0.6 RNF2 ZBTB8A GLIS2 ZFHX2 ZBTB48 GLIS1 ZNF341 ZBTB26 EZH2 AFF2 AFF2-IT1
GH0XF148500 0.7 ENCODE 0.2 -45.9 -45903 0.2 ZNF341 ZBTB26 EZH2 AFF2 AFF2-IT1
GH0XF148609 1.1 Ensembl ENCODE 0.2 +63.3 63295 1.3 MTA2 JUNB ZNF140 TBX21 JUND EED IKZF1 MYB NBN TRIM28 LINC00893 IDS2 FMR1-IT1 AFF2-IT1 RN7SKP267
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around AFF2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AFF2-IT1 Gene

148,546,878 bp from pter
148,547,397 bp from pter
520 bases
Plus strand

Genomic View for AFF2-IT1 Gene

Genes around AFF2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFF2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFF2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AFF2-IT1 Gene

Proteins for AFF2-IT1 Gene

Post-translational modifications for AFF2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFF2-IT1 Gene

Domains & Families for AFF2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AFF2-IT1 Gene

Function for AFF2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF2-IT1 Gene

Localization for AFF2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AFF2-IT1 Gene

Pathways & Interactions for AFF2-IT1 Gene

SuperPathways for AFF2-IT1 Gene

No Data Available

Interacting Proteins for AFF2-IT1 Gene

Gene Ontology (GO) - Biological Process for AFF2-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for AFF2-IT1 Gene

Transcripts for AFF2-IT1 Gene

mRNA/cDNA for AFF2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AFF2-IT1 Gene

No ASD Table

Relevant External Links for AFF2-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AFF2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AFF2-IT1 Gene

genes like me logo Genes that share expression patterns with AFF2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for AFF2-IT1 Gene

Orthologs for AFF2-IT1 Gene

Evolution for AFF2-IT1 Gene

Gene Tree for AFF2-IT1 (if available)
Gene Tree for AFF2-IT1 (if available)

No data available for Orthologs for AFF2-IT1 Gene

Paralogs for AFF2-IT1 Gene

No data available for Paralogs for AFF2-IT1 Gene

Variants for AFF2-IT1 Gene

Relevant External Links for AFF2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AFF2-IT1 Gene

Disorders for AFF2-IT1 Gene

No disorders were found for AFF2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AFF2-IT1 Gene

Publications for AFF2-IT1 Gene

No publications were found for AFF2-IT1 Gene.

Products for AFF2-IT1 Gene

Sources for AFF2-IT1 Gene

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