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Aliases for AFF1-AS1 Gene

Subcategory (RNA class) for AFF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for AFF1-AS1 Gene

  • AFF1 Antisense RNA 1 2 3
  • C4orf36 4 5
  • Chromosome 4 Open Reading Frame 36 5

External Ids for AFF1-AS1 Gene

Summaries for AFF1-AS1 Gene

GeneCards Summary for AFF1-AS1 Gene

AFF1-AS1 (AFF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFF1-AS1 Gene

Genomics for AFF1-AS1 Gene

Regulatory Elements for AFF1-AS1 Gene

Enhancers for AFF1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G086957 2 FANTOM5 Ensembl ENCODE dbSUPER 13.3 -24.2 -24155 6.3 PKNOX1 FOXA2 ARNT FEZF1 YY1 ZNF766 CBX5 FOS ZNF263 JUNB AFF1 C4orf36 AFF1-AS1 LOC260422 MAPK10 NUDT9 KLHL8 PIR55151 GC04P086967 TECRP1
GH04G087004 2 FANTOM5 Ensembl ENCODE dbSUPER 12.8 -74.3 -74252 11.9 MLX CREB3L1 AGO1 ZFP64 YY1 ZNF143 NFYC TBX21 ZNF610 GLIS1 AFF1 AFF1-AS1 C4orf36 RPL6P13 LOC260422 MAPK10 HSD17B13 SLC10A6 GC04P087042 PIR55151
GH04G087101 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -169.4 -169432 7.7 PKNOX1 FOXA2 RAD21 ZNF766 SCRT2 FOS CREM MIXL1 CEBPB PPARG AFF1 AFF1-AS1 C4orf36 MAPK10 ENSG00000250572 HSD17B13 GC04P087116 LOC105377320
GH04G087028 1.5 Ensembl ENCODE dbSUPER 12 -99.1 -99142 13.1 HDGF PKNOX1 SIN3A FEZF1 TCF12 GATA2 FOS ZNF263 REST MAFF AFF1 AFF1-AS1 C4orf36 LOC260422 MAPK10 SLC10A6 NUDT9 GC04P087042 GC04P086967 PIR55151
GH04G087017 1.5 Ensembl ENCODE dbSUPER 11.6 -82.8 -82811 2.9 HDGF PKNOX1 FOXA2 ATF1 ARNT TCF12 ZNF121 GATA2 FOS TBX21 AFF1 AFF1-AS1 C4orf36 LOC260422 HSD17B13 SLC10A6 GC04P087042 GC04P086967 PIR55151
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AFF1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for AFF1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for AFF1-AS1 Gene

86,876,205 bp from pter
86,936,202 bp from pter
59,998 bases
Minus strand

Genomic View for AFF1-AS1 Gene

Genes around AFF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFF1-AS1 Gene

Proteins for AFF1-AS1 Gene

  • Protein details for AFF1-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C4orf36
    Protein Accession:

    Protein attributes for AFF1-AS1 Gene

    117 amino acids
    Molecular mass:
    13276 Da
    Quaternary structure:
    No Data Available

neXtProt entry for AFF1-AS1 Gene

Post-translational modifications for AFF1-AS1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AFF1-AS1 Gene

No data available for DME Specific Peptides for AFF1-AS1 Gene

Domains & Families for AFF1-AS1 Gene

Protein Domains for AFF1-AS1 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AFF1-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AFF1-AS1 Gene

Function for AFF1-AS1 Gene

Phenotypes for AFF1-AS1 Gene

GenomeRNAi human phenotypes for AFF1-AS1:
genes like me logo Genes that share phenotypes with AFF1-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFF1-AS1 Gene

Localization for AFF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AFF1-AS1 Gene

Pathways & Interactions for AFF1-AS1 Gene

SuperPathways for AFF1-AS1 Gene

No Data Available

Interacting Proteins for AFF1-AS1 Gene

Gene Ontology (GO) - Biological Process for AFF1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for AFF1-AS1 Gene

Drugs & Compounds for AFF1-AS1 Gene

No Compound Related Data Available

Transcripts for AFF1-AS1 Gene

mRNA/cDNA for AFF1-AS1 Gene

(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for AFF1-AS1 Gene

No ASD Table

Relevant External Links for AFF1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AFF1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFF1-AS1 Gene

Orthologs for AFF1-AS1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for AFF1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C4orf36 35
  • 99 (a)
(Canis familiaris)
Mammalia C4orf36 35
  • 74 (a)
(Mus musculus)
Mammalia 1700016H13Rik 35
  • 63 (a)
(Monodelphis domestica)
Mammalia C4orf36 35
  • 52 (a)
(Ornithorhynchus anatinus)
Mammalia C4orf36 35
  • 34 (a)
Species where no ortholog for AFF1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for AFF1-AS1 Gene

Gene Tree for AFF1-AS1 (if available)
Gene Tree for AFF1-AS1 (if available)

Paralogs for AFF1-AS1 Gene

No data available for Paralogs for AFF1-AS1 Gene

Variants for AFF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AFF1-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000000112 -- 86,931,361(+) TACAC(C/T)GCTTT intron-variant
rs1000082113 -- 86,936,184(+) TAGGG(A/G)GAAAG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000482326 -- 86,926,805(+) CTGCC(A/G)TACAA intron-variant
rs1001013817 -- 86,931,409(+) TGTTT(C/T)TGTTT intron-variant
rs1001157783 -- 86,932,299(+) CTGAG(A/G)TGGTG intron-variant

Relevant External Links for AFF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AFF1-AS1 Gene

Disorders for AFF1-AS1 Gene

No disorders were found for AFF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for AFF1-AS1 Gene

Publications for AFF1-AS1 Gene

  1. A high-density genome-wide association screen of sporadic ALS in US veterans. (PMID: 22470424) Kwee L.C. … Hauser M.A. (PLoS ONE 2012) 3 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for AFF1-AS1 Gene

Sources for AFF1-AS1 Gene

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