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Aliases for AFDN-AS1 Gene

Subcategory (RNA class) for AFDN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AFDN-AS1 Gene

  • AFDN Antisense RNA 1 (Head To Head) 2 3 5
  • MLLT4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • MLLT4 Antisense RNA 1 (Head To Head) 2 3
  • C6orf124 3 4
  • Chromosome 6 Open Reading Frame 124 2
  • AFDN Antisense Gene Protein 1 4
  • AFDN Antisense RNA 1 4
  • Protein HGC6.4 4
  • DJ431P23.3 3
  • MLLT4-AS1 3
  • HGC6.4 3

External Ids for AFDN-AS1 Gene

Previous HGNC Symbols for AFDN-AS1 Gene

  • C6orf124
  • MLLT4-AS1

Summaries for AFDN-AS1 Gene

GeneCards Summary for AFDN-AS1 Gene

AFDN-AS1 (AFDN Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFDN-AS1 Gene

Genomics for AFDN-AS1 Gene

Regulatory Elements for AFDN-AS1 Gene

Enhancers for AFDN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F167805 1.2 ENCODE 11.9 +20.4 20417 2.3 ATF1 MLX ARID4B DMAP1 ZNF48 SP5 MXD4 MIER2 PPARG KAT8 AFDN AFDN-AS1 LINC01558
GH06F167782 0.2 ENCODE 11.2 +43.8 43775 1.2 SOX13 ELF3 TFAP4 SAP130 ARID4B ZNF48 ZNF7 TEAD3 ZNF366 GATA2 AFDN AFDN-AS1 LOC441178 LOC441179 LOC100422263
GH06F167786 1.3 Ensembl ENCODE 11.2 +39.8 39809 1.0 TFE3 MNT RAD21 NR2F2 ZNF707 ZNF316 SMARCA4 POLR2A PRDM1 AFDN AFDN-AS1 LOC441178 LOC441179 LOC100422263
GH06F167937 0.7 ENCODE 11 -111.3 -111342 1.3 MAX MNT BCL6 RARA AFDN AFDN-AS1 KIF25 KIF25-AS1 LINC01558 PIR39756 HGC6.3
GH06F167744 1.1 ENCODE 5 +81.4 81365 2.2 PKNOX1 KLF17 FEZF1 ZNF2 ZEB1 ZNF335 ZNF121 GLIS2 ZNF391 ZNF680 LOC105378136 AFDN AFDN-AS1 LOC100422263 LOC105378132
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around AFDN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for AFDN-AS1 Gene

Chromosome:
6
Start:
167,823,876 bp from pter
End:
167,826,796 bp from pter
Size:
2,921 bases
Orientation:
Minus strand

Genomic View for AFDN-AS1 Gene

Genes around AFDN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFDN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFDN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFDN-AS1 Gene

Proteins for AFDN-AS1 Gene

  • Protein details for AFDN-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6Z5-AFAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein AFDN-AS1
    Protein Accession:
    Q9Y6Z5
    Secondary Accessions:
    • B4DW86
    • Q8NB23

    Protein attributes for AFDN-AS1 Gene

    Size:
    254 amino acids
    Molecular mass:
    26128 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for AFDN-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AFDN-AS1 Gene

Post-translational modifications for AFDN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFDN-AS1 Gene

Domains & Families for AFDN-AS1 Gene

Protein Domains for AFDN-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for AFDN-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AFDN-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for AFDN-AS1 Gene

Function for AFDN-AS1 Gene

Gene Ontology (GO) - Molecular Function for AFDN-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with AFDN-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFDN-AS1 Gene

Localization for AFDN-AS1 Gene

Gene Ontology (GO) - Cellular Components for AFDN-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with AFDN-AS1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for AFDN-AS1 Gene

Pathways & Interactions for AFDN-AS1 Gene

SuperPathways for AFDN-AS1 Gene

No Data Available

Interacting Proteins for AFDN-AS1 Gene

Gene Ontology (GO) - Biological Process for AFDN-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with AFDN-AS1: view

No data available for Pathways by source and SIGNOR curated interactions for AFDN-AS1 Gene

Transcripts for AFDN-AS1 Gene

mRNA/cDNA for AFDN-AS1 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AFDN-AS1 Gene

MLLT4 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AFDN-AS1 Gene

No ASD Table

Relevant External Links for AFDN-AS1 Gene

GeneLoc Exon Structure for
AFDN-AS1
ECgene alternative splicing isoforms for
AFDN-AS1

Expression for AFDN-AS1 Gene

SOURCE GeneReport for Unigene cluster for AFDN-AS1 Gene:

Hs.520556

mRNA Expression by UniProt/SwissProt for AFDN-AS1 Gene:

Q9Y6Z5-AFAS1_HUMAN
Tissue specificity: Ubiquitously expressed.

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for AFDN-AS1 Gene

Orthologs for AFDN-AS1 Gene

Evolution for AFDN-AS1 Gene

ENSEMBL:
Gene Tree for AFDN-AS1 (if available)
TreeFam:
Gene Tree for AFDN-AS1 (if available)

No data available for Orthologs for AFDN-AS1 Gene

Paralogs for AFDN-AS1 Gene

No data available for Paralogs for AFDN-AS1 Gene

Variants for AFDN-AS1 Gene

Sequence variations from dbSNP and Humsavar for AFDN-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111951952 -- 167,826,880(+) CGGGC(C/G)GGTGC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs112059996 -- 167,825,897(-) GGGAC(C/T)GGTGG nc-transcript-variant, upstream-variant-2KB
rs112445073 -- 167,824,008(+) ACTGC(A/G)CCCGG nc-transcript-variant
rs112590324 -- 167,824,889(+) ACTTT(A/C)ATTTT intron-variant, upstream-variant-2KB
rs112774667 -- 167,826,136(+) TCGGA(A/C)CCAGC nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for AFDN-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv217e55 CNV gain 17911159
dgv27e196 CNV duplication 17116639
esv2422263 CNV duplication 17116639
esv2761051 CNV gain 21179565
nsv1027114 CNV gain 25217958
nsv1074037 CNV deletion 25765185
nsv830864 CNV gain 17160897
nsv949897 CNV deletion 24416366

Relevant External Links for AFDN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFDN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AFDN-AS1 Gene

Disorders for AFDN-AS1 Gene

Relevant External Links for AFDN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AFDN-AS1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AFDN-AS1

No disorders were found for AFDN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFDN-AS1 Gene

Publications for AFDN-AS1 Gene

  1. Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer. (PMID: 10382971) Minaguchi T. … Nakamura Y. (DNA Res. 1999) 2 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4 64

Products for AFDN-AS1 Gene

Sources for AFDN-AS1 Gene

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