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Aliases for AFAP1L1 Gene

Aliases for AFAP1L1 Gene

  • Actin Filament Associated Protein 1 Like 1 2 3 5
  • Actin Filament Associated Protein 1-Like 1 2
  • AFAP1-Like Protein 1 4

External Ids for AFAP1L1 Gene

Previous GeneCards Identifiers for AFAP1L1 Gene

  • GC05P148632
  • GC05P143797
  • GC05P148651

Summaries for AFAP1L1 Gene

GeneCards Summary for AFAP1L1 Gene

AFAP1L1 (Actin Filament Associated Protein 1 Like 1) is a Protein Coding gene. An important paralog of this gene is AFAP1.

UniProtKB/Swiss-Prot for AFAP1L1 Gene

  • May be involved in podosome and invadosome formation.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFAP1L1 Gene

Genomics for AFAP1L1 Gene

Regulatory Elements for AFAP1L1 Gene

Enhancers for AFAP1L1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G149209 1.7 FANTOM5 Ensembl ENCODE dbSUPER 26.1 -58.0 -57999 8.5 ZNF493 ZFP64 BMI1 GATA2 ZNF354C RCOR1 FOS ZNF263 ZNF654 ZNF680 AFAP1L1 HMGXB3 RPS20P4 RPL7P1 LOC102546294 TIGD6 ENSG00000248647 ENSG00000253406 ABLIM3 GC05M149047
GH05G149220 1.2 FANTOM5 ENCODE dbSUPER 28.4 -50.6 -50623 1.6 SOX5 SOX13 FOXA2 SAP130 FOXA3 HLF ZKSCAN8 GLIS1 TRIM28 AFAP1L1 SH3TC2 ARHGEF37 GC05M149047
GH05G149295 1.4 Ensembl ENCODE dbSUPER 20.3 +26.3 26328 5.5 ELF3 FOXA2 ARID4B DMAP1 RARA GATA2 ZNF366 ZSCAN5C SCRT2 EGR2 AFAP1L1 PCYOX1L ENSG00000248647 ENSG00000253406 ENSG00000253865 MIR143 IL17B CARMN GC05M149294
GH05G149270 1.2 ENCODE dbSUPER 23.1 +0.9 932 3.7 ELF3 TBP ZNF76 KLF17 SIN3A GLI4 ZBTB40 GLIS2 ZNF366 SCRT2 AFAP1L1 ENSG00000248647
GH05G149239 1 Ensembl ENCODE 26.7 -31.4 -31448 1.4 LEF1 ATF1 CREB3L1 ETV1 ZNF175 MAX GATA2 ELK1 ZNF584 SMARCE1 AFAP1L1 GC05M149047
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around AFAP1L1 on UCSC Golden Path with GeneCards custom track

Promoters for AFAP1L1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000188766 362 1601 KLF17 SIN3A GLI4 GLIS2 ZNF366 SCRT2 EGR2 ZNF263 SP3 ZBTB11

Genomic Location for AFAP1L1 Gene

Chromosome:
5
Start:
149,271,838 bp from pter
End:
149,343,637 bp from pter
Size:
71,800 bases
Orientation:
Plus strand

Genomic View for AFAP1L1 Gene

Genes around AFAP1L1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AFAP1L1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AFAP1L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFAP1L1 Gene

Proteins for AFAP1L1 Gene

  • Protein details for AFAP1L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TED9-AF1L1_HUMAN
    Recommended name:
    Actin filament-associated protein 1-like 1
    Protein Accession:
    Q8TED9
    Secondary Accessions:
    • Q08AN4
    • Q08AN5
    • Q8IW82
    • Q8N8Z5
    • Q8N9Q4

    Protein attributes for AFAP1L1 Gene

    Size:
    768 amino acids
    Molecular mass:
    86432 Da
    Quaternary structure:
    • Interacts with CTTN.
    SequenceCaution:
    • Sequence=BAB85011.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for AFAP1L1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for AFAP1L1 Gene

Post-translational modifications for AFAP1L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for AFAP1L1 Gene

No data available for DME Specific Peptides for AFAP1L1 Gene

Domains & Families for AFAP1L1 Gene

Gene Families for AFAP1L1 Gene

Protein Domains for AFAP1L1 Gene

Suggested Antigen Peptide Sequences for AFAP1L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AFAP1L1: view

No data available for UniProtKB/Swiss-Prot for AFAP1L1 Gene

Function for AFAP1L1 Gene

Molecular function for AFAP1L1 Gene

UniProtKB/Swiss-Prot Function:
May be involved in podosome and invadosome formation.

Gene Ontology (GO) - Molecular Function for AFAP1L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with AFAP1L1: view
genes like me logo Genes that share phenotypes with AFAP1L1: view

Animal Model Products

CRISPR Products

miRNA for AFAP1L1 Gene

miRTarBase miRNAs that target AFAP1L1

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for AFAP1L1 Gene

Localization for AFAP1L1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for AFAP1L1 Gene

Cytoplasm. Cell projection, podosome. Cell projection, invadopodium. Note=In the cytosol, associated with actin stress fibers.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for AFAP1L1 gene
Compartment Confidence
cytoskeleton 4
nucleus 4
cytosol 3
plasma membrane 2
mitochondrion 2

Gene Ontology (GO) - Cellular Components for AFAP1L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002102 podosome IEA --
GO:0005737 cytoplasm IEA --
GO:0030054 cell junction IEA --
GO:0042995 cell projection IEA --
GO:0071437 invadopodium IEA --
genes like me logo Genes that share ontologies with AFAP1L1: view

Pathways & Interactions for AFAP1L1 Gene

SuperPathways for AFAP1L1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AFAP1L1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFAP1L1 Gene

Transcripts for AFAP1L1 Gene

Unigene Clusters for AFAP1L1 Gene

Actin filament associated protein 1-like 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for AFAP1L1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b
SP1: - - - -
SP2:
SP3: - -
SP4: -
SP5:

Relevant External Links for AFAP1L1 Gene

GeneLoc Exon Structure for
AFAP1L1
ECgene alternative splicing isoforms for
AFAP1L1

Expression for AFAP1L1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AFAP1L1 Gene

mRNA differential expression in normal tissues according to GTEx for AFAP1L1 Gene

This gene is overexpressed in Adipose - Subcutaneous (x4.6) and Heart - Left Ventricle (x4.5).

Protein differential expression in normal tissues from HIPED for AFAP1L1 Gene

This gene is overexpressed in Placenta (39.9) and Fetal heart (25.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for AFAP1L1 Gene



Protein tissue co-expression partners for AFAP1L1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of AFAP1L1 Gene:

AFAP1L1

SOURCE GeneReport for Unigene cluster for AFAP1L1 Gene:

Hs.483793

mRNA Expression by UniProt/SwissProt for AFAP1L1 Gene:

Q8TED9-AF1L1_HUMAN
Tissue specificity: Expressed in breast, colon and brain. In all 3 tissues, expressed in the microvasculature (at protein level). In addition, in the breast, found in the contractile myoepithelial cell layer which surrounds the breast ducts (at protein level). In the colon, expressed in the mucous membrane and colonic crypts and in the smooth muscle cell layer which provide movement of the colon (at protein level). In the cerebellum, localized around the Purkinje neurons and the granule cells of the granular layer, but not inside cell bodies (at protein level). Outside of the cerebellar cortex, expressed in glial cells (at protein level). Highly expressed away from the cell bodies within the dentate nucleus (at protein level).

Evidence on tissue expression from TISSUES for AFAP1L1 Gene

  • Lung(4.4)
  • Skin(4.3)
  • Spleen(4.3)
genes like me logo Genes that share expression patterns with AFAP1L1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for AFAP1L1 Gene

Orthologs for AFAP1L1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for AFAP1L1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia AFAP1L1 34 35
  • 99.78 (n)
cow
(Bos Taurus)
Mammalia AFAP1L1 34 35
  • 89.86 (n)
dog
(Canis familiaris)
Mammalia AFAP1L1 34 35
  • 89.78 (n)
mouse
(Mus musculus)
Mammalia Afap1l1 34 16 35
  • 86.74 (n)
rat
(Rattus norvegicus)
Mammalia Afap1l1 34
  • 86.35 (n)
oppossum
(Monodelphis domestica)
Mammalia AFAP1L1 35
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia AFAP1L1 35
  • 49 (a)
OneToOne
chicken
(Gallus gallus)
Aves AFAP1L1 34 35
  • 74.16 (n)
lizard
(Anolis carolinensis)
Reptilia AFAP1L1 35
  • 68 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia afap1l1 34
  • 66.84 (n)
zebrafish
(Danio rerio)
Actinopterygii AFAP1L1 (3 of 4) 35
  • 57 (a)
OneToMany
afap1l1a 35 35
  • 56 (a)
OneToMany
afap1l1b 35
  • 55 (a)
OneToMany
Dr.16264 34
Species where no ortholog for AFAP1L1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for AFAP1L1 Gene

ENSEMBL:
Gene Tree for AFAP1L1 (if available)
TreeFam:
Gene Tree for AFAP1L1 (if available)

Paralogs for AFAP1L1 Gene

Paralogs for AFAP1L1 Gene

(1) SIMAP similar genes for AFAP1L1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with AFAP1L1: view

Variants for AFAP1L1 Gene

Sequence variations from dbSNP and Humsavar for AFAP1L1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000017539 -- 149,298,840(+) AATGC(A/G)GAATC intron-variant, utr-variant-5-prime
rs1000027254 -- 149,319,677(+) TACGT(A/G)GATGT reference, synonymous-codon
rs1000047758 -- 149,323,695(+) CCCTT(A/G)ACTAC intron-variant
rs1000085958 -- 149,277,984(+) CCAGC(C/T)TCTCC intron-variant
rs1000095430 -- 149,331,352(+) GCGGT(A/G)GCTCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AFAP1L1 Gene

Variant ID Type Subtype PubMed ID
dgv3191n106 CNV deletion 24896259
esv2659018 CNV deletion 23128226
esv2663792 CNV deletion 23128226
esv2730905 CNV deletion 23290073
esv2730907 CNV deletion 23290073
esv2763508 CNV loss 21179565
esv3566801 CNV deletion 23714750
esv3607137 CNV gain 21293372
esv3607138 CNV gain 21293372

Variation tolerance for AFAP1L1 Gene

Residual Variation Intolerance Score: 67.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.94; 59.63% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for AFAP1L1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AFAP1L1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AFAP1L1 Gene

Disorders for AFAP1L1 Gene

Relevant External Links for AFAP1L1

Genetic Association Database (GAD)
AFAP1L1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AFAP1L1

No disorders were found for AFAP1L1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFAP1L1 Gene

Publications for AFAP1L1 Gene

  1. AFAP1L1 is a novel adaptor protein of the AFAP family that interacts with cortactin and localizes to invadosomes. (PMID: 21333378) Snyder B.N. … Cunnick J.M. (Eur. J. Cell Biol. 2011) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Regulation of sarcoma cell migration, invasion and invadopodia formation by AFAP1L1 through a phosphotyrosine-dependent pathway. (PMID: 26212012) Tie S.R. … Ingley E. (Oncogene 2016) 3 64
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  5. AFAP1L1, a novel associating partner with vinculin, modulates cellular morphology and motility, and promotes the progression of colorectal cancers. (PMID: 24723436) Takahashi R. … Toguchida J. (Cancer Med 2014) 3 64

Products for AFAP1L1 Gene

Sources for AFAP1L1 Gene

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