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Aliases for AFAP1-AS1 Gene

Subcategory (RNA class) for AFAP1-AS1 Gene


Quality Score for this RNA gene is


Aliases for AFAP1-AS1 Gene

  • AFAP1 Antisense RNA 1 2 3
  • AFAP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AFAP1 Antisense RNA (Non-Protein Coding) 2
  • AFAP1-AS 3
  • AFAP1AS 3

External Ids for AFAP1-AS1 Gene

ORGUL Members for AFAP1-AS1 Gene

Previous HGNC Symbols for AFAP1-AS1 Gene

  • AFAP1-AS

Summaries for AFAP1-AS1 Gene

GeneCards Summary for AFAP1-AS1 Gene

AFAP1-AS1 (AFAP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFAP1-AS1 Gene

Genomics for AFAP1-AS1 Gene

Genomic Location for AFAP1-AS1 Gene

7,754,090 bp from pter
7,778,928 bp from pter
24,839 bases
Plus strand

Genomic View for AFAP1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AFAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFAP1-AS1 Gene

No data available for Regulatory Elements for AFAP1-AS1 Gene

Proteins for AFAP1-AS1 Gene

Post-translational modifications for AFAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFAP1-AS1 Gene

Domains for AFAP1-AS1 Gene

Gene Families for AFAP1-AS1 Gene

  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AFAP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AFAP1-AS1 Gene

Function for AFAP1-AS1 Gene

Phenotypes for AFAP1-AS1 Gene

GenomeRNAi human phenotypes for AFAP1-AS1:
genes like me logo Genes that share phenotypes with AFAP1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for AFAP1-AS1 Gene

Localization for AFAP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AFAP1-AS1 Gene

Pathways for AFAP1-AS1 Gene

SuperPathways for AFAP1-AS1 Gene

No Data Available

Interacting Proteins for AFAP1-AS1 Gene

Gene Ontology (GO) - Biological Process for AFAP1-AS1 Gene


No data available for Pathways by source for AFAP1-AS1 Gene

Transcripts for AFAP1-AS1 Gene

mRNA/cDNA for AFAP1-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AFAP1-AS1 Gene

AFAP1 antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate AFAP1-AS1
    • Block miRNA regulation of AFAP1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for AFAP1-AS1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for AFAP1-AS1 Gene

    No ASD Table

    Relevant External Links for AFAP1-AS1 Gene

    GeneLoc Exon Structure for
    ECgene alternative splicing isoforms for

    Expression for AFAP1-AS1 Gene

    SOURCE GeneReport for Unigene cluster for AFAP1-AS1 Gene Hs.663029

    No Expression Related Data Available

    In Situ Assay Products

    No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for AFAP1-AS1 Gene

    Orthologs for AFAP1-AS1 Gene

    Evolution for AFAP1-AS1 Gene

    Gene Tree for AFAP1-AS1 (if available)
    Gene Tree for AFAP1-AS1 (if available)

    No data available for Orthologs for AFAP1-AS1 Gene

    Paralogs for AFAP1-AS1 Gene

    No data available for Paralogs for AFAP1-AS1 Gene

    Variants for AFAP1-AS1 Gene

    Sequence variations from dbSNP and Humsavar for AFAP1-AS1 Gene

    SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
    rs757241 -- 7,753,823(-) CCTCT(C/G)TCTTC upstream-variant-2KB
    rs1859235 -- 7,754,217(-) ttcac(A/G)ctgct intron-variant
    rs1859236 -- 7,754,124(-) CATGG(C/T)GGGAG nc-transcript-variant
    rs2107176 -- 7,757,624(-) GGGGG(C/T)GGGGC intron-variant
    rs2107177 -- 7,757,615(-) GCCGC(A/G)GGCAC intron-variant

    Structural Variations from Database of Genomic Variants (DGV) for AFAP1-AS1 Gene

    Variant ID Type Subtype PubMed ID
    esv34196 OTHER Inversion 12058347
    nsv878570 CNV Gain 21882294
    nsv878575 CNV Loss 21882294
    nsv878577 CNV Loss 21882294
    esv2727074 CNV Deletion 23290073
    esv2727075 CNV Deletion 23290073
    esv2727076 CNV Deletion 23290073
    esv2727077 CNV Deletion 23290073
    esv2727078 CNV Deletion 23290073
    nsv822468 CNV Gain 20364138
    esv2727079 CNV Deletion 23290073

    Relevant External Links for AFAP1-AS1 Gene

    HapMap Linkage Disequilibrium report

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AFAP1-AS1 Gene

    Disorders for AFAP1-AS1 Gene

    No disorders were found for AFAP1-AS1 Gene.

    No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for AFAP1-AS1 Gene

    Publications for AFAP1-AS1 Gene

    1. Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma. (PMID: 23333711) Wu W. … Meltzer S.J. (Gastroenterology 2013) 2 3
    2. Developmental changes in the transcriptome of human cerebral cortex tissue: long noncoding RNA transcripts. (PMID: 23377288) Lipovich L. … Wildman D.E. (Cereb. Cortex 2014) 3
    3. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for AFAP1-AS1 Gene

    Sources for AFAP1-AS1 Gene

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