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Aliases for AFAP1-AS1 Gene

Subcategory (RNA class) for AFAP1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for AFAP1-AS1 Gene

  • AFAP1 Antisense RNA 1 2 3
  • AFAP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AFAP1 Antisense RNA (Non-Protein Coding) 2
  • AFAP1-AS 3
  • AFAP1AS 3

External Ids for AFAP1-AS1 Gene

Previous HGNC Symbols for AFAP1-AS1 Gene

  • AFAP1AS
  • AFAP1-AS

Summaries for AFAP1-AS1 Gene

GeneCards Summary for AFAP1-AS1 Gene

AFAP1-AS1 (AFAP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFAP1-AS1 Gene

Genomics for AFAP1-AS1 Gene

Genomic Location for AFAP1-AS1 Gene

Chromosome:
4
Start:
7,754,090 bp from pter
End:
7,778,928 bp from pter
Size:
24,839 bases
Orientation:
Plus strand

Genomic View for AFAP1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AFAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFAP1-AS1 Gene

No data available for Regulatory Elements for AFAP1-AS1 Gene

Proteins for AFAP1-AS1 Gene

Post-translational modifications for AFAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFAP1-AS1 Gene

Domains & Families for AFAP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AFAP1-AS1 Gene

Function for AFAP1-AS1 Gene

Phenotypes for AFAP1-AS1 Gene

GenomeRNAi human phenotypes for AFAP1-AS1:
genes like me logo Genes that share phenotypes with AFAP1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AFAP1-AS1 Gene

Localization for AFAP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AFAP1-AS1 Gene

Pathways & Interactions for AFAP1-AS1 Gene

SuperPathways for AFAP1-AS1 Gene

No Data Available

Interacting Proteins for AFAP1-AS1 Gene

Gene Ontology (GO) - Biological Process for AFAP1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AFAP1-AS1 Gene

Drugs & Compounds for AFAP1-AS1 Gene

No Compound Related Data Available

Transcripts for AFAP1-AS1 Gene

mRNA/cDNA for AFAP1-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AFAP1-AS1 Gene

AFAP1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AFAP1-AS1 Gene

No ASD Table

Relevant External Links for AFAP1-AS1 Gene

GeneLoc Exon Structure for
AFAP1-AS1
ECgene alternative splicing isoforms for
AFAP1-AS1

Expression for AFAP1-AS1 Gene

SOURCE GeneReport for Unigene cluster for AFAP1-AS1 Gene Hs.663029

No Expression Related Data Available

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for AFAP1-AS1 Gene

Orthologs for AFAP1-AS1 Gene

Evolution for AFAP1-AS1 Gene

ENSEMBL:
Gene Tree for AFAP1-AS1 (if available)
TreeFam:
Gene Tree for AFAP1-AS1 (if available)

No data available for Orthologs for AFAP1-AS1 Gene

Paralogs for AFAP1-AS1 Gene

No data available for Paralogs for AFAP1-AS1 Gene

Variants for AFAP1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AFAP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34196 OTHER Inversion 12058347
nsv878570 CNV Gain 21882294
nsv878575 CNV Loss 21882294
nsv878577 CNV Loss 21882294
esv2727074 CNV Deletion 23290073
esv2727075 CNV Deletion 23290073
esv2727076 CNV Deletion 23290073
esv2727077 CNV Deletion 23290073
esv2727078 CNV Deletion 23290073
nsv822468 CNV Gain 20364138
esv2727079 CNV Deletion 23290073

Relevant External Links for AFAP1-AS1 Gene

HapMap Linkage Disequilibrium report
AFAP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for AFAP1-AS1 Gene

Disorders for AFAP1-AS1 Gene

Relevant External Links for AFAP1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
AFAP1-AS1
genes like me logo Genes that share disorders with AFAP1-AS1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AFAP1-AS1 Gene

Publications for AFAP1-AS1 Gene

  1. Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma. (PMID: 23333711) Wu W. … Meltzer S.J. (Gastroenterology 2013) 2 67
  2. AFAP1-AS1, a long noncoding RNA upregulated in lung cancer and promotes invasion and metastasis. (PMID: 26245991) Zeng Z. … Xiong W. (Tumour Biol. 2015) 67
  3. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 67
  4. Long Noncoding RNA Expression Signatures of Metastatic Nasopharyngeal Carcinoma and Their Prognostic Value. (PMID: 26448942) Zhang W. … Xiang Y. (Biomed Res Int 2015) 67
  5. Upregulated long non-coding RNA AFAP1-AS1 expression is associated with progression and poor prognosis of nasopharyngeal carcinoma. (PMID: 26246469) Bo H. … Zeng Z. (Oncotarget 2015) 67

Products for AFAP1-AS1 Gene

Sources for AFAP1-AS1 Gene

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