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Aliases for AFAP1-AS1 Gene

Subcategory (RNA class) for AFAP1-AS1 Gene


Quality Score for this RNA gene is


Aliases for AFAP1-AS1 Gene

  • AFAP1 Antisense RNA 1 2 3
  • AFAP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AFAP1 Antisense RNA (Non-Protein Coding) 2
  • AFAP1-AS 3
  • AFAP1AS 3

External Ids for AFAP1-AS1 Gene

ORGUL Members for AFAP1-AS1 Gene

Previous HGNC Symbols for AFAP1-AS1 Gene

  • AFAP1-AS

Summaries for AFAP1-AS1 Gene

GeneCards Summary for AFAP1-AS1 Gene

AFAP1-AS1 (AFAP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AFAP1-AS1 Gene

Genomics for AFAP1-AS1 Gene

Genomic Location for AFAP1-AS1 Gene

7,754,090 bp from pter
7,778,928 bp from pter
24,839 bases
Plus strand

Genomic View for AFAP1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for AFAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AFAP1-AS1 Gene

No data available for Regulatory Elements for AFAP1-AS1 Gene

Proteins for AFAP1-AS1 Gene

Post-translational modifications for AFAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AFAP1-AS1 Gene

Domains for AFAP1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AFAP1-AS1 Gene

Function for AFAP1-AS1 Gene

Phenotypes for AFAP1-AS1 Gene

GenomeRNAi human phenotypes for AFAP1-AS1:
genes like me logo Genes that share phenotypes with AFAP1-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for AFAP1-AS1 Gene

Localization for AFAP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for AFAP1-AS1 Gene

Pathways for AFAP1-AS1 Gene

SuperPathways for AFAP1-AS1 Gene

No Data Available

Interacting Proteins for AFAP1-AS1 Gene

Gene Ontology (GO) - Biological Process for AFAP1-AS1 Gene


No data available for Pathways by source for AFAP1-AS1 Gene

Transcripts for AFAP1-AS1 Gene

mRNA/cDNA for AFAP1-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for AFAP1-AS1 Gene

AFAP1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AFAP1-AS1 Gene

No ASD Table

Relevant External Links for AFAP1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AFAP1-AS1 Gene

SOURCE GeneReport for Unigene cluster for AFAP1-AS1 Gene Hs.663029

No Expression Related Data Available

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for AFAP1-AS1 Gene

Orthologs for AFAP1-AS1 Gene

Evolution for AFAP1-AS1 Gene

Gene Tree for AFAP1-AS1 (if available)
Gene Tree for AFAP1-AS1 (if available)

No data available for Orthologs for AFAP1-AS1 Gene

Paralogs for AFAP1-AS1 Gene

No data available for Paralogs for AFAP1-AS1 Gene

Variants for AFAP1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AFAP1-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs757241 -- 7,753,823(-) CCTCT(C/G)TCTTC upstream-variant-2KB
rs1859235 -- 7,754,217(-) ttcac(A/G)ctgct intron-variant
rs1859236 -- 7,754,124(-) CATGG(C/T)GGGAG nc-transcript-variant
rs2107176 -- 7,757,624(-) GGGGG(C/T)GGGGC intron-variant
rs2107177 -- 7,757,615(-) GCCGC(A/G)GGCAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for AFAP1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34196 OTHER Inversion 12058347
nsv878570 CNV Gain 21882294
nsv878575 CNV Loss 21882294
nsv878577 CNV Loss 21882294
esv2727074 CNV Deletion 23290073
esv2727075 CNV Deletion 23290073
esv2727076 CNV Deletion 23290073
esv2727077 CNV Deletion 23290073
esv2727078 CNV Deletion 23290073
nsv822468 CNV Gain 20364138
esv2727079 CNV Deletion 23290073

Relevant External Links for AFAP1-AS1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for AFAP1-AS1 Gene

Disorders for AFAP1-AS1 Gene

No disorders were found for AFAP1-AS1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for AFAP1-AS1 Gene

Publications for AFAP1-AS1 Gene

  1. Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma. (PMID: 23333711) Wu W. … Meltzer S.J. (Gastroenterology 2013) 2 3
  2. Developmental changes in the transcriptome of human cerebral cortex tissue: long noncoding RNA transcripts. (PMID: 23377288) Lipovich L. … Wildman D.E. (Cereb. Cortex 2014) 3
  3. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for AFAP1-AS1 Gene

Sources for AFAP1-AS1 Gene

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