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Aliases & Descriptions for AFAP1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AFAP 1 , 2 , 3 AFAP-110 1 , 2 , 3 FLJ56849 2 OTTHUMP00000155170 2
Descriptions 110 kDa actin filament-associated protein 3 actin filament associated protein 1 2 actin filament-associated protein, 110 kDa 2
Search outside databases for aliases for AFAP1 gene
Summaries for AFAP1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for AFAP1 : The protein encoded by this gene is a Src binding partner. It may represent a potential modulatorof actin filament integrity in response to cellular signals, and may function as an adaptorprotein by linking Src family members and/or other signaling proteins to actin filaments. Multipletranscript variants encoding different isoforms have been found for this gene. [provided byRefSeq] UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556 Function : Can cross-link actin filaments into both network and bundle structures (By similarity).May modulate changes in actin filament integrity and induce lamellipodia formation. May functionas an adapter molecule that links other proteins, such as SRC and PKC to the actin cytoskeleton.Seems to play a role in the development and progression of prostate adenocarcinoma by regulatingcell-matrix adhesions and migration in the cancer cells
Gene Wiki entry for AFAP1
Genomic Location for AFAP1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4p16 Ensembl cytogenetic band: 4p16.1 HGNC cytogenetic band: 4p16 AFAP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04M007811:
(about GC identifiers )
Start:
7,811,340 bp from pter
End:
7,992,553 bp from pter
Size:
181,214 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000004.10 NT_006051.17 Proteins for AFAP1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556 (See
protein sequence )Recommended Name: Actin filament-associated protein 1 Size : 730 amino acids; 80725 Da
Subunit : Monomer and homomultimer. Interacts via its C-terminus with F-actin; probably involvingAFAP1 multimers (By similarity). Interacts with activated SRC SH3-SH2 domains. Interacts via itsPH 1 domain with PRKCA, PRKCB and PRKCI (By similarity)
Subcellular location : Cytoplasm, cytoskeleton. Note=Localizes with stress fibers in quiescentcells, concentrated in cell motility structures such as lamellipodia, filopodia and membraneruffles upon their induction
Miscellaneous : Knockdown in MDA-MB-231 cells resulted in loss of actin stress fibers, decreasedadhesion and spreading on fibronectin
Secondary accessions : A8K442 Q59EY5 Q9HBY1
Post-translational modifications:
Phosphorylated on tyrosine residues by SRC1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001128119.1 NP_067651.2 NP_940997.1 ENSEMBL proteins: ENSP00000353402 ENSP00000371983 ENSP00000351245 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: AFAP1 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for AFAP1: Assays for AFAP1:
Protein
Domains/ Families for AFAP1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q8N556 ProtoNet protein and cluster: Q8N556
1 Blocks protein family : IPB001849 Pleckstrin-like UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556 Similarity : Contains 2 PH domains
Gene Function for AFAP1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001134647 Applied Biosystems Silencer ® siRNAs for AFAP1 Sigma-Aldrich siRNA for AFAP1 Sigma-Aldrich shRNA Panels and shRNA for AFAP1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001134647                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001134647                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001134647  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001134647 UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556 Function : Can cross-link actin filaments into both network and bundle structures (By similarity).May modulate changes in actin filament integrity and induce lamellipodia formation. May functionas an adapter molecule that links other proteins, such as SRC and PKC to the actin cytoskeleton.Seems to play a role in the development and progression of prostate adenocarcinoma by regulatingcell-matrix adhesions and migration in the cancer cells
1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003779 actin binding
IEA --
About this table
Pathways & Interactions for AFAP1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for AFAP1 5/6 Interacting proteins for AFAP1 (ENSP00000353402 3 ) via UniProtKB, MINT, and/or STRING (see all 6
)About this table
Drugs & Compounds for AFAP1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for AFAP1 2 Novoseek chemical compound relationships for AFAP1 gene
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Transcripts for AFAP1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001134647 Sigma-Aldrich siRNA for AFAP1 Sigma-Aldrich shRNA Panels and shRNA for AFAP1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001134647 NM_198595
REFSEQ mRNAs for AFAP1 gene (3 alternative transcripts): NM_001134647.1 NM_021638.4 NM_198595.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001134647 NM_198595
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001134647                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001134647                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001134647  
Additional cDNA sequence: AB209676.1 AF188700.1 AK127962.1 AK290807.1 AK297631.1 BC015900.1 BC032777.1 CR606819.1 D25248.1
6 DOTS entries : DT.97822158 DT.215914 DT.101956502 DT.100829322 DT.121232595 DT.92067800
24/126 AceView cDNA sequences (see all 126
):F02531 BC032777 BU686680 NM_021638 AI188460 AI468446 AI085991 BF036843 AI913295 BU164761 BX950996 D57870 AI291099 BQ182989 AW151921 CB217097 F06246 R43661 F08751 BU186955 BU616014 CR606819 AA322072 NM_198595
highest scoring ESTs for AFAP1 :AI878896 AL706148 AL708077 AU077262 BI561136 BM828817 BX646525 AA045547 AA045548 AA292096
Unigene Cluster for AFAP1: Actin filament associated protein 1 Hs.529369 [show with all ESTs ] Unigene Representative Sequence: NM_001134647 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for AFAP1 (see all 12
) ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d ^ 9a · 9b · 9c · 9d ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ SP1 :     -   -         -       -         -                         SP2 :               -       -                                 SP3 :                     -         -                         SP4 :     -   -     -   -   -       -         -                         SP5 :                                                 -    
ExUns: 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23a · 23b SP1 :                 SP2 :                 SP3 :                 SP4 :                 SP5 :                
About this scheme ECgene alternative splicing isoforms for AFAP1 3 Ensembl transcripts including schematic representations : ENST00000360265
ENST00000382543
ENST00000358461
Expression for AFAP1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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AFAP1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for AFAP1 1 / 2 / 3
3 probe-sets matching AFAP1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGATACGTTSOURCE GeneReport for Unigene cluster: Hs.529369 UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556 Tissue specificity : Low expression in normal breast epithelial cell line MCF-10A and in tumorigenicbreast cancer cell lines MCF-7, T-47D, and ZR75-1. Highly expressed in the invasive breast cancercell lines MDA-MB-231 and MDA-MB-435
Orthologs for AFAP1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for AFAP1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for AFAP1 ENSEMBL Gene Tree for AFAP1 Paralogs for AFAP1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for AFAP1 gene AFAP1L2 2 AFAP1L1 2
SNPs/Variants for AFAP1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for AFAP1 (up to first 250kb)
Disorders & Mutations for AFAP1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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and/or TGDB .)
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OMIM: 608252 UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556
Overexpressed in prostate carcinoma, expression levels positively correlate withaggressiveness of the disease
Medical News for AFAP1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for AFAP1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/40 PubMed articles for AFAP1 gene (see all 40
): AFAP-110 is required for actin stress fiber formation and cell adhesion in MDA-MB-231 breast cancer cells. (PubMed id 17520695) 1, 3, 4 Dorfleutner A....Flynn D.C. (2007) The intrinsic ability of AFAP-110 to alter actin filament integrity is linked with its ability to also activate cellular tyrosine kinases. (PubMed id 11641786) 1, 2, 3 Baisden J.M....Flynn D.C. (2001) The actin filament-associated protein AFAP-110 is an adaptor protein that modulates changes in actin filament integrity. (PubMed id 11607843) 1, 2, 3 Baisden J.M....Flynn D.C. (2001) Analysis of the role of the leucine zipper motif in regulating the ability of AFAP-110 to alter actin filament integrity. (PubMed id 14755689) 1, 2, 3 Qian Y....Flynn D.C. (2004) AFAP-110 is overexpressed in prostate cancer and contributes to tumorigenic growth by regulating focal contacts. (PubMed id 17885682) 1, 4 Zhang J....Gallick G.E. (2007) Conversion of mechanical force into biochemical signaling. (PubMed id 15485829) 1, 4 Han B....Liu M. (2004) Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336) 4 Cantin G.T....Yates J.R. III (2008) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 3 Kimura K.... Sugano S. (2006) Phosphoproteome analysis of the human mitotic spindle. (PubMed id 16565220) 4 Nousiainen M.... Koerner R. (2006)
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Genome Databases showing AFAP1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing AFAP1
(According to HUGE )
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Specialized Databases showing AFAP1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for AFAP1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Recombinant Proteins (AFAP ) Antibodies (AFAP )
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