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AFAP1 Gene

protein-coding   GIFtS: 56

GC04M007811
actin filament associated protein 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
AFAP 1, 2, 3
AFAP-110 1, 2, 3
FLJ56849 2
OTTHUMP00000155170 2
Descriptions
110 kDa actin filament-associated protein 3
actin filament associated protein 1 2
actin filament-associated protein, 110 kDa 2
External Ids
HGNC: 240171
Entrez Gene: 603122
UniProtKB: Q8N5563
Ensembl: ENSG000001965267
Search outside databases for aliases for AFAP1 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for AFAP1:
The protein encoded by this gene is a Src binding partner. It may represent a potential modulator
of actin filament integrity in response to cellular signals, and may function as an adaptor
protein by linking Src family members and/or other signaling proteins to actin filaments. Multiple
transcript variants encoding different isoforms have been found for this gene. [provided by
RefSeq]

UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556
Function: Can cross-link actin filaments into both network and bundle structures (By similarity).
May modulate changes in actin filament integrity and induce lamellipodia formation. May function
as an adapter molecule that links other proteins, such as SRC and PKC to the actin cytoskeleton.
Seems to play a role in the development and progression of prostate adenocarcinoma by regulating
cell-matrix adhesions and migration in the cancer cells

Gene Wiki entry for AFAP1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p16   Ensembl cytogenetic band:  4p16.1   HGNC cytogenetic band: 4p16

AFAP1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M007811:     (about GC identifiers)

Start:
7,811,340 bp from pter
End:
7,992,553 bp from pter
Size:
181,214 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000004.10  NT_006051.17  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556 (See protein sequence)
Recommended Name: Actin filament-associated protein 1  
Size: 730 amino acids; 80725 Da
Subunit: Monomer and homomultimer. Interacts via its C-terminus with F-actin; probably involving
AFAP1 multimers (By similarity). Interacts with activated SRC SH3-SH2 domains. Interacts via its
PH 1 domain with PRKCA, PRKCB and PRKCI (By similarity)
Subcellular location: Cytoplasm, cytoskeleton. Note=Localizes with stress fibers in quiescent
cells, concentrated in cell motility structures such as lamellipodia, filopodia and membrane
ruffles upon their induction
Miscellaneous: Knockdown in MDA-MB-231 cells resulted in loss of actin stress fibers, decreased
adhesion and spreading on fibronectin
Secondary accessions: A8K442 Q59EY5 Q9HBY1

Post-translational modifications:

  • Phosphorylated on tyrosine residues by SRC1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (3 alternative transcripts): 
    NP_001128119.1  NP_067651.2  NP_940997.1  


    ENSEMBL proteins: 
    ENSP00000353402 ENSP00000371983 ENSP00000351245 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (AFAP)
    Human Recombinant Proteins from Abnova (AFAP)
                  OriGene Purified Recombinant Human Protein: AFAP1 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm IEA--
    GO:0005856 cytoskeleton IEA--
    About this table

    Antibodies for AFAP1: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for AFAP1
    R&D Systems Antibodies for AFAP1 (AFAP)
    Antibodies from Abcam (AFAP), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (AFAP)
    Novus Biologicals Antibodies for AFAP1

    Assays for AFAP1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    2 InterPro domains/families:
     IPR001849 Pleckstrin_homology
     IPR011993 PH_type


       GeneDecks  AFAP1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q8N556

    ProtoNet protein and cluster: Q8N556

    1 Blocks protein family: IPB001849 Pleckstrin-like

    UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556
    Similarity: Contains 2 PH domains

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (AFAP1)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001134647

                  Applied Biosystems Silencer® siRNAs for AFAP1

                  Sigma-Aldrich siRNA for AFAP1  
                         Sigma-Aldrich shRNA Panels and shRNA for AFAP1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for AFAP1
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001134647
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001134647
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_001134647 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_001134647

    UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556
    Function: Can cross-link actin filaments into both network and bundle structures (By similarity).
    May modulate changes in actin filament integrity and induce lamellipodia formation. May function
    as an adapter molecule that links other proteins, such as SRC and PKC to the actin cytoskeleton.
    Seems to play a role in the development and progression of prostate adenocarcinoma by regulating
    cell-matrix adhesions and migration in the cancer cells

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003779 actin binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Millipore Pathway for AFAP1
     Immune response IFN gamma signaling pathway

       GeneDecks  AFAP1 for the pathways selected above  
    About GeneDecksing

     Gene Network CentralTM Interacting Genes and Proteins Network for  AFAP1 


    5/6 Interacting proteins for AFAP1 (ENSP000003534023) via UniProtKB, MINT, and/or STRING (see all 6 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SRCENSP000003626593STRING (score=.987)
    GSTCDENSP000003536953STRING (score=.853)
    ACTA1ENSP000003556453STRING (score=.8)
    ACTC1ENSP000002903783STRING (score=.798)
    PRKCAENSP000002843843STRING (score=.796)
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for AFAP1
    2 Novoseek chemical compound relationships for AFAP1 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    leucine 42.74 4 11641786 (1), 14755689 (1), 10380016 (1), 11607843 (1)
    tyrosine 35.41 8 11641786 (2), 15314167 (2), 15485829 (1), 11607843 (1) (see all 5)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (AFAP1)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001134647

                  Sigma-Aldrich siRNA for AFAP1  
                         Sigma-Aldrich shRNA Panels and shRNA for AFAP1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001134647  NM_198595  

    REFSEQ mRNAs for AFAP1 gene (3 alternative transcripts): 

    NM_001134647.1   NM_021638.4   NM_198595.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001134647  NM_198595  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001134647
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001134647
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_001134647 

    Additional cDNA sequence: 

    AB209676.1 AF188700.1 AK127962.1 AK290807.1 AK297631.1 BC015900.1 BC032777.1 CR606819.1 
    D25248.1 

    6 DOTS entries:

    DT.97822158  DT.215914  DT.101956502  DT.100829322  DT.121232595  DT.92067800 

    24/126 AceView cDNA sequences (see all 126 ):

    F02531 BC032777 BU686680 NM_021638 AI188460 AI468446 AI085991 BF036843 
    AI913295 BU164761 BX950996 D57870 AI291099 BQ182989 AW151921 CB217097 
    F06246 R43661 F08751 BU186955 BU616014 CR606819 AA322072 NM_198595 

    highest scoring ESTs for AFAP1:

    AI878896 AL706148 AL708077 AU077262 BI561136 BM828817 BX646525 AA045547 AA045548 AA292096 

    Unigene Cluster for AFAP1:

    Actin filament associated protein 1
    Hs.529369  [show with all ESTs]
    Unigene Representative Sequence: NM_001134647


    GeneLoc Exon Structure

    5/12 Alternative Splicing Database (ASD) splice patterns (SP) for AFAP1 (see all 12 )

    ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d ^ 9a · 9b · 9c · 9d ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^
    SP1:              -     -                       -                 -                       -                                                                     
    SP2:                                            -                 -                                                                                             
    SP3:                                                              -                       -                                                                     
    SP4:              -     -           -     -     -                 -                       -                                                                     
    SP5:                                                                                                                                                  -         

    ExUns: 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23a · 23b
    SP1:                                                
    SP2:                                                
    SP3:                                                
    SP4:                                                
    SP5:                                                

    About this scheme

    ECgene alternative splicing isoforms for AFAP1

    3 Ensembl transcripts including schematic representations:
    ENST00000360265  ENST00000382543  ENST00000358461  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    AFAP1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for AFAP1

    1 / 2 / 3

    3 probe-sets matching AFAP1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    37578_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 D25248 0.60 1.00 0.82 1

    203563_at2, 3 U133-A 1 1.00 1.00 -- -- NM_021638 0.60 1.00 0.82 1

    203563_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  AFAP1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GTGATACGTT

    SOURCE GeneReport for Unigene cluster: Hs.529369

    UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556
    Tissue specificity: Low expression in normal breast epithelial cell line MCF-10A and in tumorigenic
    breast cancer cell lines MCF-7, T-47D, and ZR75-1. Highly expressed in the invasive breast cancer
    cell lines MDA-MB-231 and MDA-MB-435

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for AFAP1 gene from 5/7 species (see all 7 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    AFAP11   -- actin filament associated protein 1 84.17(n)
    90.75(a)
    488786  XM_545904.2  XP_545904.2 
    chimpanzee
    (Pan troglodytes)
    AFAP11   -- actin filament associated protein 1 99.36(n)
    99.73(a)
    461111  XM_517101.2  XP_517101.2 
    cow
    (Bos taurus)
    AFAP11   -- actin filament associated protein 1 84.95(n)
    91.55(a)
    534032  XM_613646.3  XP_613646.3 
    rat
    (Rattus norvegicus)
    Afap11   -- actin filament associated protein 1 84(n)
    90.95(a)
    140935  NM_080900.1  NP_543176.1 
    mouse
    (Mus musculus)
    Afap11, 5 55
    actin filament associated protein 11, 5 84.59(n)1
    92.04(a)1
    702921  NM_027373.21  NP_081649.11 
     AI8487295  AK0111535  (see all 15)
    About this table        Species with no ortholog for AFAP1

    ENSEMBL Gene Tree for AFAP1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for AFAP1 gene
    AFAP1L22  AFAP1L12  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/1634 NCBI SNPs in AFAP1 are shown (see all 1634 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 482)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 4 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs22400541,2
    A,C,F,H,O7816093(-) CCAGAT/CAGGCC 2 -- ut318Minor allele frequency- C:0.41EA EU WA NA 2048
    rs22698501,2
    A,C,F,H,O7814661(-) TCTGCC/TGGGAA 2 -- ut31 ese313Minor allele frequency- T:0.29EA NA EU WA 2366
    rs22857701,2
    A,C,F,H,O7812111(-) CTGCCG/ATAAAT 2 -- ut31 ese39Minor allele frequency- A:0.42EA NA EU WA 2082
    rs22857711,2
    A,C,F,H,O7812014(-) GCACCC/TAGGAA 2 -- ut31 ese312Minor allele frequency- T:0.42EA NA EU WA 2382
    rs22857641,2
    A,C,F,H,O7814061(-) TGCCCG/AACGGC 2 -- ut31 ese37Minor allele frequency- A:0.29NA EU EA WA 562
    rs46891631,2
    A,C,F,H7813256(+) CCCTCA/GAATCT 2 -- ut31 ese37Minor allele frequency- G:0.38NA EU EA WA 560
    rs117374471,2
    A,C,F,H7810876(+) TGAGAG/ACCTAG 1 -- ng514Minor allele frequency- A:0.12EU EA WA 408
    rs22857631,2
    C,F,H,O7814204(-) GTCACG/AGTCCT 2 -- ut31 ese37Minor allele frequency- A:0.16NA EU EA WA 516
    rs22400561,2
    A,C,F,H7813213(-) TGGGCC/GATGGC 2 -- ut314Minor allele frequency- G:0.30EU EA WA 410
    rs22857621,2
    C,F,H,O7814305(-) TTGACG/ACTCTT 2 -- ut31 ese38Minor allele frequency- A:0.28EA EU WA NA 1862
    About this table

    HapMap Linkage Disequilibrium images for AFAP1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 608252

    UniProtKB/Swiss-Prot: AFAP1_HUMAN, Q8N556
  • Overexpressed in prostate carcinoma, expression levels positively correlate with
    aggressiveness of the disease
  • (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/40 PubMed articles for AFAP1 gene (see all 40 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 60312 HGNC: 24017 AceView: AFAP Ensembl:ENSG00000196526 euGenes: HUgn60312
    ECgene: AFAP1 H-InvDB: AFAP1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for AFAP1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for AFAP1 Antibodies for AFAP1
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for AFAP1 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Purified proteins from HEK293T cells
     Western blot validated antibodies
     shRNA in GFP-retroviral vector
     Search Tocris compounds for AFAP1




     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for AFAP1

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