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Aliases for ADPGK-AS1 Gene

Subcategory (RNA class) for ADPGK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADPGK-AS1 Gene

  • ADPGK Antisense RNA 1 2 3 5
  • ADPGK Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ADPGK-AS1 Gene

Previous GeneCards Identifiers for ADPGK-AS1 Gene

  • GC15P073075

Summaries for ADPGK-AS1 Gene

GeneCards Summary for ADPGK-AS1 Gene

ADPGK-AS1 (ADPGK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADPGK-AS1 Gene

Genomics for ADPGK-AS1 Gene

Regulatory Elements for ADPGK-AS1 Gene

Enhancers for ADPGK-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F072781 1.2 FANTOM5 Ensembl ENCODE 6.8 +1.9 1895 5.7 HDGF CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 BBS4 TMEM202 LOC105370890 ARIH1 ENSG00000260672 ADPGK ENSG00000261187 LOC105370888 HEXA ENSG00000260037
GH15F072796 1 Ensembl ENCODE 5.1 +14.2 14226 1.3 ZNF76 GLI4 ZNF2 RAD21 GLIS2 ZNF143 ZNF263 SMARCA5 SP3 REST LOC105370888 ARIH1 ENSG00000260037 ENSG00000260672 LOC105370887 HEXA ADPGK-AS1 ADPGK NPM1P42
GH15F072774 0.8 Ensembl ENCODE 0.4 -7.7 -7747 1.4 ZSCAN5A PKNOX1 IKZF1 CEBPB MYC SPI1 BBS4 ADPGK-AS1 PIR32168
GH15F072769 0.3 FANTOM5 0.4 -13.5 -13452 0.3 ADPGK ARIH1 ENSG00000260037 CELF6 PARP6 ADPGK-AS1 PIR32168
GH15F072757 0.5 ENCODE 0.3 -24.7 -24677 1.6 HLF ZNF335 JUND GLIS1 FOS PRDM1 ZBTB26 MAFK ZBTB20 NFE2L2 ADPGK BBS4 PIR32168 ADPGK-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ADPGK-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ADPGK-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000022055 565 2401 HDGF CREB3L1 MLX ZFP64 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF207

Genomic Location for ADPGK-AS1 Gene

Chromosome:
15
Start:
72,782,835 bp from pter
End:
72,798,199 bp from pter
Size:
15,365 bases
Orientation:
Plus strand

Genomic View for ADPGK-AS1 Gene

Genes around ADPGK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADPGK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADPGK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADPGK-AS1 Gene

Proteins for ADPGK-AS1 Gene

Post-translational modifications for ADPGK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADPGK-AS1 Gene

Domains & Families for ADPGK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADPGK-AS1 Gene

Function for ADPGK-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADPGK-AS1 Gene

Localization for ADPGK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ADPGK-AS1 Gene

Pathways & Interactions for ADPGK-AS1 Gene

SuperPathways for ADPGK-AS1 Gene

No Data Available

Interacting Proteins for ADPGK-AS1 Gene

Gene Ontology (GO) - Biological Process for ADPGK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADPGK-AS1 Gene

Transcripts for ADPGK-AS1 Gene

mRNA/cDNA for ADPGK-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ADPGK-AS1 Gene

ADPGK antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ADPGK-AS1 Gene

No ASD Table

Relevant External Links for ADPGK-AS1 Gene

GeneLoc Exon Structure for
ADPGK-AS1
ECgene alternative splicing isoforms for
ADPGK-AS1

Expression for ADPGK-AS1 Gene

mRNA expression in normal human tissues for ADPGK-AS1 Gene

SOURCE GeneReport for Unigene cluster for ADPGK-AS1 Gene:

Hs.562587
genes like me logo Genes that share expression patterns with ADPGK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ADPGK-AS1 Gene

Orthologs for ADPGK-AS1 Gene

Evolution for ADPGK-AS1 Gene

ENSEMBL:
Gene Tree for ADPGK-AS1 (if available)
TreeFam:
Gene Tree for ADPGK-AS1 (if available)

No data available for Orthologs for ADPGK-AS1 Gene

Paralogs for ADPGK-AS1 Gene

No data available for Paralogs for ADPGK-AS1 Gene

Variants for ADPGK-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADPGK-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10559533 -- 72,796,333(+) GCGGT(-/AG)AGAGT intron-variant
rs10656518 -- 72,782,528(+) GTCCA(-/AAA)AAAAA intron-variant, upstream-variant-2KB
rs11072389 -- 72,796,142(+) TATAT(C/T)TTTGC intron-variant
rs111810782 -- 72,783,711(+) CGCAC(C/T)TGCGC nc-transcript-variant, utr-variant-5-prime
rs111815448 -- 72,785,789(+) CTCAT(A/C/T)GGGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ADPGK-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2760039 CNV gain+loss 17122850
nsv1121512 CNV deletion 24896259
nsv428307 CNV gain 18775914

Relevant External Links for ADPGK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADPGK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADPGK-AS1 Gene

Disorders for ADPGK-AS1 Gene

Relevant External Links for ADPGK-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADPGK-AS1

No disorders were found for ADPGK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADPGK-AS1 Gene

Publications for ADPGK-AS1 Gene

  1. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations. (PMID: 23263486) KAPttgen A. … Gieger C. (Nat. Genet. 2013) 3 64

Products for ADPGK-AS1 Gene

Sources for ADPGK-AS1 Gene

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