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Aliases for ADNP-AS1 Gene

Subcategory (RNA class) for ADNP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADNP-AS1 Gene

  • ADNP Antisense RNA 1 2 3 5

External Ids for ADNP-AS1 Gene

Summaries for ADNP-AS1 Gene

GeneCards Summary for ADNP-AS1 Gene

ADNP-AS1 (ADNP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ADNP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADNP-AS1 Gene

Genomics for ADNP-AS1 Gene

Regulatory Elements for ADNP-AS1 Gene

Enhancers for ADNP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H050186 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -739.7 -739706 10 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ADNP DDX27 DPM1 PSMD10P1 MOCS3 ENSG00000232043 SNORD12B LINC01273 ENSG00000199490 RPSAP1
GH20H050635 1.6 Ensembl ENCODE dbSUPER 11.5 -293.9 -293877 3 HDGF PKNOX1 ARID4B SIN3A ZBTB7B ZNF766 ZNF207 ZNF143 FOS SP3 ADNP RPSAP1 ENSG00000199490 ENSG00000232043 ADNP-AS1 PSMD10P1 DPM1 LOC100506175 RPL36P2
GH20H051333 1.6 Ensembl ENCODE dbSUPER 10.6 +406.3 406250 6 PKNOX1 FEZF1 ZNF766 ZNF143 FOS ZC3H11A JUNB ZNF592 MEF2D SMARCA4 ADNP DPM1 ENSG00000232358 ADNP-AS1 PSMD10P1 ZFP64 LOC105372663 GC20M051206
GH20H051768 1.2 ENCODE dbSUPER 11.5 +838.0 838013 0 HDGF PKNOX1 NFIB INSM2 SIN3A YBX1 BMI1 ZBTB7B GLIS2 SCRT2 LINC01429 RPSAP1 ENSG00000225785 ENSG00000232465 ADNP DPM1 ADNP-AS1 PSMD10P1 ATP9A GC20P051788
GH20H051859 0.9 ENCODE 11.5 +929.2 929243 1 PKNOX1 INSM2 FEZF1 RFX5 ZNF121 GLIS2 ZNF366 ZSCAN5C SCRT2 FOS ADNP ZFP64 LINC01429 ENSG00000232465 ENSG00000225785 RPSAP1 DPM1 ADNP-AS1 GC20M051835
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ADNP-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ADNP-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000138596 -284 2601 MLX DMAP1 YY1 ZNF143 SP3 ZC3H11A SSRP1 ZNF610 GLIS1 NBN

Genomic Location for ADNP-AS1 Gene

Chromosome:
20
Start:
50,930,984 bp from pter
End:
50,945,134 bp from pter
Size:
14,151 bases
Orientation:
Plus strand

Genomic View for ADNP-AS1 Gene

Genes around ADNP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADNP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADNP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADNP-AS1 Gene

Proteins for ADNP-AS1 Gene

Post-translational modifications for ADNP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADNP-AS1 Gene

Domains & Families for ADNP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADNP-AS1 Gene

Function for ADNP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADNP-AS1 Gene

Localization for ADNP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADNP-AS1 Gene

Pathways & Interactions for ADNP-AS1 Gene

SuperPathways for ADNP-AS1 Gene

No Data Available

Interacting Proteins for ADNP-AS1 Gene

Gene Ontology (GO) - Biological Process for ADNP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADNP-AS1 Gene

Drugs & Compounds for ADNP-AS1 Gene

No Compound Related Data Available

Transcripts for ADNP-AS1 Gene

mRNA/cDNA for ADNP-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ADNP-AS1 Gene

No ASD Table

Relevant External Links for ADNP-AS1 Gene

GeneLoc Exon Structure for
ADNP-AS1
ECgene alternative splicing isoforms for
ADNP-AS1

Expression for ADNP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADNP-AS1 Gene

genes like me logo Genes that share expression patterns with ADNP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADNP-AS1 Gene

Orthologs for ADNP-AS1 Gene

Evolution for ADNP-AS1 Gene

ENSEMBL:
Gene Tree for ADNP-AS1 (if available)
TreeFam:
Gene Tree for ADNP-AS1 (if available)

No data available for Orthologs for ADNP-AS1 Gene

Paralogs for ADNP-AS1 Gene

No data available for Paralogs for ADNP-AS1 Gene

Variants for ADNP-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADNP-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs587777114 Pathogenic 50,935,173(+) GAAAG(A/G)TACTA intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense
rs587777116 Pathogenic 50,942,070(+) CACCT(A/C)CATTT intron-variant, nc-transcript-variant, reference, missense
rs11480415 Likely benign 50,935,242(+) TAGTT(-/A/AA/AAA)TAAAA intron-variant, upstream-variant-2KB
rs60224379 Likely benign 50,935,243(+) TAGTT(A/T)AAAAA intron-variant, upstream-variant-2KB
rs146262101 Uncertain significance 50,935,136(+) TTTAT(A/G)TAGTA intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ADNP-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1072547 CNV deletion 25765185
nsv1143987 CNV deletion 24896259
nsv834002 CNV loss 17160897
nsv954057 CNV deletion 24416366

Relevant External Links for ADNP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADNP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADNP-AS1 Gene

Disorders for ADNP-AS1 Gene

Relevant External Links for ADNP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADNP-AS1

No disorders were found for ADNP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADNP-AS1 Gene

Publications for ADNP-AS1 Gene

No publications were found for ADNP-AS1 Gene.

Products for ADNP-AS1 Gene

Sources for ADNP-AS1 Gene

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