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ADNP Gene(Protein Coding)

Activity-Dependent Neuroprotector Homeobox

GCID:
GC20M050888
GIFtS:
61
Genes Participants
UDN Logo

Aliases for ADNP Gene

Aliases for ADNP Gene

  • Activity-Dependent Neuroprotector Homeobox 2 3 5
  • Activity-Dependent Neuroprotective Protein 3 4
  • ADNP Homeobox 1 2 3
  • ADNP1 3 4
  • Activity-Dependent Neuroprotector 2
  • KIAA0784 4
  • HVDAS 3
  • MRD28 3

External Ids for ADNP Gene

Previous GeneCards Identifiers for ADNP Gene

  • GC20M049235
  • GC20M050145
  • GC20M050192
  • GC20M048940
  • GC20M049505
  • GC20M046255

Summaries for ADNP Gene

Entrez Gene Summary for ADNP Gene

  • Vasoactive intestinal peptide is a neuroprotective factor that has a stimulatory effect on the growth of some tumor cells and an inhibitory effect on others. This gene encodes a protein that is upregulated by vasoactive intestinal peptide and may be involved in its stimulatory effect on certain tumor cells. The encoded protein contains one homeobox and nine zinc finger domains, suggesting that it functions as a transcription factor. This gene is also upregulated in normal proliferative tissues. Finally, the encoded protein may increase the viability of certain cell types through modulation of p53 activity. Alternatively spliced transcript variants encoding the same protein have been described. [provided by RefSeq, Jul 2008]

GeneCards Summary for ADNP Gene

ADNP (Activity-Dependent Neuroprotector Homeobox) is a Protein Coding gene. Diseases associated with ADNP include helsmoortel-van der aa syndrome and adnp-related multiple congenital anomalies-intellectual disability-autism spectrum disorder. GO annotations related to this gene include chromatin binding. An important paralog of this gene is ADNP2.

UniProtKB/Swiss-Prot for ADNP Gene

  • Potential transcription factor. May mediate some of the neuroprotective peptide VIP-associated effects involving normal growth and cancer proliferation.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADNP Gene

Genomics for ADNP Gene

Products:

  1. Regulatory Element

Regulatory Elements for ADNP Gene

Enhancers for ADNP Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ADNP on UCSC Golden Path with GeneCards custom track

Promoters for ADNP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ADNP on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the ADNP gene promoter:

Genomic Location for ADNP Gene

Chromosome:
20
Start:
50,888,918 bp from pter
End:
50,931,240 bp from pter
Size:
42,323 bases
Orientation:
Minus strand

Genomic View for ADNP Gene

Genes around ADNP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADNP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADNP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ADNP Gene

Proteins for ADNP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for ADNP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H2P0-ADNP_HUMAN
    Recommended name:
    Activity-dependent neuroprotector homeobox protein
    Protein Accession:
    Q9H2P0
    Secondary Accessions:
    • E1P5Y2
    • O94881
    • Q5BKU2
    • Q9UG34

    Protein attributes for ADNP Gene

    Size:
    1102 amino acids
    Molecular mass:
    123563 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • When isolated from the sequence, neuroprotective peptide (NAP) provides neuroprotection against the beta-amyloid peptide.

neXtProt entry for ADNP Gene

Proteomics data for ADNP Gene at MOPED

Protein Expression for ADNP Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for ADNP Gene

  • Ubiquitination at Lys 126, Lys 773, and Lys 777
  • Modification sites at PhosphoSitePlus

Other Protein References for ADNP Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for ADNP Gene

Domains & Families for ADNP Gene

Gene Families for ADNP Gene

HGNC:

Protein Domains for ADNP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ADNP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H2P0

UniProtKB/Swiss-Prot:

ADNP_HUMAN :
  • Contains 1 homeobox DNA-binding domain.
  • Contains 9 C2H2-type zinc fingers.
Domain:
  • Contains 1 homeobox DNA-binding domain.
Similarity:
  • Contains 9 C2H2-type zinc fingers.
genes like me logo Genes that share domains with ADNP: view

Function for ADNP Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for ADNP Gene

UniProtKB/Swiss-Prot Function:
Potential transcription factor. May mediate some of the neuroprotective peptide VIP-associated effects involving normal growth and cancer proliferation.

Gene Ontology (GO) - Molecular Function for ADNP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005507 copper ion binding IEA --
GO:0005515 protein binding IPI 20562864
genes like me logo Genes that share ontologies with ADNP: view

Phenotypes for ADNP Gene

MGI mutant phenotypes for ADNP:
inferred from 1 alleles
GenomeRNAi human phenotypes for ADNP:
genes like me logo Genes that share phenotypes with ADNP: view

Human Phenotype Ontology for ADNP Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for ADNP Gene

MGI Knock Outs for ADNP:

Animal Model Products

miRNA for ADNP Gene

miRTarBase miRNAs that target ADNP

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for ADNP Gene

Localization for ADNP Gene

Subcellular locations from UniProtKB/Swiss-Prot for ADNP Gene

Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ADNP Gene COMPARTMENTS Subcellular localization image for ADNP gene
Compartment Confidence
nucleus 5
cytoskeleton 3
cytosol 2
extracellular 2

Gene Ontology (GO) - Cellular Components for ADNP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0030425 dendrite IEA --
genes like me logo Genes that share ontologies with ADNP: view

Pathways & Interactions for ADNP Gene

SuperPathways for ADNP Gene

PathCards logoMore details on SuperPathways for ADNP
No Data Available

Gene Ontology (GO) - Biological Process for ADNP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0007614 short-term memory IEA --
GO:0010035 response to inorganic substance IEA --
GO:0010629 negative regulation of gene expression IEA --
genes like me logo Genes that share ontologies with ADNP: view

No data available for Pathways by source and SIGNOR curated interactions for ADNP Gene

Drugs & Compounds for ADNP Gene

Products:

  1. Drug

(1) Drugs for ADNP Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for ADNP Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with ADNP: view

Transcripts for ADNP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for ADNP Gene

(6) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(389) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ADNP Gene

Activity-dependent neuroprotector homeobox:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADNP Gene

No ASD Table

Relevant External Links for ADNP Gene

GeneLoc Exon Structure for
ADNP
ECgene alternative splicing isoforms for
ADNP

Expression for ADNP Gene

Products:

  1. Primer

mRNA expression in normal human tissues for ADNP Gene

mRNA expression in normal human tissues for ADNP Gene
mRNA expression by BioGPS for ADNP GenemRNA expression by GTEx for ADNP Gene

Protein differential expression in normal tissues from HIPED for ADNP Gene

This gene is overexpressed in Peripheral blood mononuclear cells (13.5), Fetal testis (7.0), and CD8 Tcells (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for ADNP Gene



SOURCE GeneReport for Unigene cluster for ADNP Gene Hs.570355

mRNA Expression by UniProt/SwissProt for ADNP Gene

Q9H2P0-ADNP_HUMAN
Tissue specificity: Widely expressed. Strong expression in heart, skeletal muscle, kidney and placenta. In brain, expression is stronger in the cerebellum and cortex regions. No expression detected in the colon. Strong increase of expression in colon and breast cancer tissues.
genes like me logo Genes that share expression patterns with ADNP: view

Protein tissue co-expression partners for ADNP Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for ADNP Gene

Orthologs for ADNP Gene

This gene was present in the common ancestor of chordates.

Orthologs for ADNP Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia ADNP 35
  • 92.13 (n)
  • 96.73 (a)
bta-mir-6527 36
  • 97 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia ADNP 35
  • 94.46 (n)
  • 97.64 (a)
ADNP 36
  • 99 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Adnp 35
  • 90.12 (n)
  • 94.45 (a)
Adnp 16
Adnp 36
  • 94 (a)
 OneToOne
chimpanzee
(Pan troglodytes)
 Mammalia ADNP 35
  • 99.67 (n)
  • 99.73 (a)
ADNP 36
  • 100 (a)
 OneToOne
rat
(Rattus norvegicus)
 Mammalia Adnp 35
  • 90.25 (n)
  • 94.28 (a)
oppossum
(Monodelphis domestica)
 Mammalia ADNP 36
  • 91 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia ADNP 36
  • 84 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves ADNP 35
  • 80.78 (n)
  • 85.79 (a)
ADNP 36
  • 76 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia ADNP 36
  • 19 (a)
 ManyToMany
tropical clawed frog
(Silurana tropicalis)
 Amphibia adnp 35
  • 69.87 (n)
  • 72.62 (a)
Str.4445 35
zebrafish
(Danio rerio)
 Actinopterygii adnp 35
  • 63.34 (n)
  • 67.12 (a)
wufi72f04 35
adnpa 36
  • 48 (a)
 OneToMany
adnpb 36
  • 54 (a)
 OneToMany
rainbow trout
(Oncorhynchus mykiss)
 Actinopterygii Omy.4117 35
Species with no ortholog for ADNP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ADNP Gene

ENSEMBL:
Gene Tree for ADNP (if available)
TreeFam:
Gene Tree for ADNP (if available)

Paralogs for ADNP Gene

Paralogs for ADNP Gene

(1) SIMAP similar genes for ADNP Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ADNP: view

Variants for ADNP Gene

Sequence variations from dbSNP and Humsavar for ADNP Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1074 -- 50,900,043(+) gtagc(C/T)taagt intron-variant
rs1010944 -- 50,908,897(+) ATTCA(A/G)GGCCC intron-variant
rs1046879 -- 50,889,287(+) GGCTT(A/C/G/T)TGAGT utr-variant-3-prime
rs1046897 -- 50,889,132(-) TAGCC(A/C)CCCTA utr-variant-3-prime
rs1062651 -- 50,892,146(-) AGAGT(C/T)AATGC reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for ADNP Gene

Variant ID Type Subtype PubMed ID
nsv834002 CNV Loss 17160897

Variation tolerance for ADNP Gene

Residual Variation Intolerance Score: 3.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.16; 39.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ADNP Gene

HapMap Linkage Disequilibrium report
ADNP
Human Gene Mutation Database (HGMD)
ADNP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ADNP Gene

Disorders for ADNP Gene

MalaCards: The human disease database

(5) MalaCards diseases for ADNP Gene - From: OMIM, ClinVar, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
helsmoortel-van der aa syndrome
  • mental retardation, autosomal dominant 28
adnp-related multiple congenital anomalies-intellectual disability-autism spectrum disorder
fetal alcohol spectrum disorder
  • fetal alcohol syndrome
fetal alcohol syndrome
  • alcohol-related neurodevelopmental disorder
autism spectrum disorder
  • pervasive development disorder
- elite association - COSMIC cancer census association via MalaCards
Search ADNP in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

ADNP_HUMAN
  • Helsmoortel-van der Aa syndrome (HVDAS) [MIM:615873]: A disorder characterized by intellectual disability, autism spectrum disorder, and dysmorphic facial features including prominent forehead, high hairline, downslanting palpebral fissures, notched eyelids, broad nasal bridge, thin upper lip, and smooth philtrum. {ECO:0000269 PubMed:24531329}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for ADNP

Genetic Association Database (GAD)
ADNP
Human Genome Epidemiology (HuGE) Navigator
ADNP
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADNP
genes like me logo Genes that share disorders with ADNP: view

No data available for Genatlas for ADNP Gene

Publications for ADNP Gene

  1. Cloning and characterization of the human activity-dependent neuroprotective protein. (PMID: 11013255) Zamostiano R. … Gozes I. (J. Biol. Chem. 2001) 2 3 4 23 67
  2. Expression of activity-dependent neuroprotective protein in the immune system: possible functions and relevance to multiple sclerosis. (PMID: 19923857) Braitch M. … Constantinescu C.S. (Neuroimmunomodulation 2010) 3 23
  3. Activity-dependent neuroprotective protein constitutes a novel element in the SWI/SNF chromatin remodeling complex. (PMID: 17878164) Mandel S. … Gozes I. (J. Biol. Chem. 2007) 3 23
  4. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T. … Ohara O. (DNA Res. 1998) 2 3
  5. Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. (PMID: 25609649) Li X. … Chen J. (Mol. Syst. Biol. 2015) 3

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