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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ADIRF Gene

protein-coding   GIFtS: 40
GCID: GC10P088728

Adipogenesis Regulatory Factor

(Previous name: chromosome 10 open reading frame 116)
(Previous symbol: C10orf116)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Adipogenesis Regulatory Factor1 2     AFRO2 3
C10orf1161 2 3     APM22 3
Adipogenesis Factor Rich In Obesity1 2 3     apM-22 3
Adipose Specific 21 2     Adipose Most Abundant Gene Transcript 21
Adipose Most Abundant Gene Transcript 2 Protein2 3     Chromosome 10 Open Reading Frame 1161
Adipose-Specific Protein 22 3     

External Ids:    HGNC: 240431   Entrez Gene: 109742   Ensembl: ENSG000001486717   UniProtKB: Q158473   

Export aliases for ADIRF gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ADIRF Gene:
APM2 gene is exclusively expressed in adipose tissue. Its function is currently unknown. (provided by RefSeq, Jul
2008)

GeneCards Summary for ADIRF Gene: 
ADIRF (adipogenesis regulatory factor) is a protein-coding gene. Diseases associated with ADIRF include obesity, and gastric cancer. GO annotations related to this gene include molecular_function.

UniProtKB/Swiss-Prot: ADIRF_HUMAN, Q15847
Function: Plays a role in fat cell development; promotes adipogenic differentiation and stimulates transcription
initiation of master adipogenesis factors like PPARG and CEBPA at early stages of preadipocyte differentiation.
Its overexpression confers resistance to the anticancer chemotherapeutic drug cisplatin




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NC_018921.2  NT_030059.13  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ADIRF
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for ADIRF

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ADIRF


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q23.2   Ensembl cytogenetic band:  10q23.2   HGNC cytogenetic band: 10q23.31

ADIRF Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ADIRF gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P088728:  view genomic region     (about GC identifiers)

Start:
88,727,949 bp from pter      End:
88,743,691 bp from pter
Size:
15,743 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ADIRF_HUMAN, Q15847 (See protein sequence)
Recommended Name: Adipogenesis regulatory factor  
Size: 76 amino acids; 7855 Da
Subcellular location: Nucleus

Explore the universe of human proteins at neXtProt for ADIRF: NX_Q15847

Explore proteomics data for ADIRF at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q15847

  • ADIRF Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ADIRF Protein Expression
    REFSEQ proteins: NP_006820.1  
    ENSEMBL proteins: 
     ENSP00000361083   ENSP00000394643   ENSP00000475582  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--

    ADIRF for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q15847


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ADIRF_HUMAN, Q15847
    Function: Plays a role in fat cell development; promotes adipogenic differentiation and stimulates transcription
    initiation of master adipogenesis factors like PPARG and CEBPA at early stages of preadipocyte differentiation.
    Its overexpression confers resistance to the anticancer chemotherapeutic drug cisplatin
    Induction: Up-regulated during pre-adipocyte differentiation. Up-regulated following DNA damage induced by UV
    irradiation

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
         
    ADIRF for ontologies           About GeneDecksing


    Phenotypes:
         3 GenomeRNAi human phenotypes for ADIRF:
     G0/1 arrest  Increased G1 DNA content  Increased gamma-H2AX phosphory 

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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section




    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ADIRF

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    3 Interacting proteins for ADIRF (Q158472, 3 ENSP000003610834) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GSK3BP498412, 3MINT-8256954 I2D: score=2 
    RPS6KA6Q9UK322, 3MINT-8269736 I2D: score=2 
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0030154cell differentiation IEA--
    GO:0045600positive regulation of fat cell differentiation IDA--
    GO:0045944positive regulation of transcription from RNA polymerase II promoter IDA--
    GO:0071478cellular response to radiation IDA--

    ADIRF for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ADIRF

    Search CenterWatch for drugs/clinical trials and news about ADIRF

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    About This Section

    REFSEQ mRNAs for ADIRF gene: 
    NM_006829.2  

    Unigene Cluster for ADIRF:

    Adipogenesis regulatory factor
    Hs.642660  [show with all ESTs]
    Unigene Representative Sequence: CD511450
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000372013(uc001ked.2) ENST00000416348 ENST00000561504
    miRNA
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    Inhib. RNA
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    Additional mRNA sequence: 

    AK312031.1 BC004471.2 D45370.1 

    8 DOTS entries:

    DT.416147  DT.87002429  DT.86995906  DT.100058139  DT.91751907  DT.95202961  DT.100035487  DT.99952584 

    24/267 AceView cDNA sequences (see all 267):

    CB107161 AJ346418 BQ218148 BM693306 BM668990 BM748818 AI637713 F30398 
    AA486472 CA406377 BE566379 AI434794 AB075855 AW006481 CB045310 BM704419 
    BQ219402 CR541790 BI836596 H49348 CR541788 BG413520 BE299889 BM838642 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for ADIRF    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b
    SP1:                              
    SP2:              -               


    ECgene alternative splicing isoforms for ADIRF

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ADIRF expression in normal human tissues (normalized intensities)      ADIRF embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ADIRF Expression
    About this image


    ADIRF expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/3 selected tissues (see all 3) fully expand
     
     Eye (Sensory Organs)
             Adult Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
     
     Uncategorized (Uncategorized)
             PureStem progenitor W8
     
     Prostate (Endocrine System)

    See ADIRF Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ADIRF

    SOURCE GeneReport for Unigene cluster: Hs.642660

    UniProtKB/Swiss-Prot: ADIRF_HUMAN, Q15847
    Tissue specificity: Expressed in adipose tissue (at protein level). Highly expressed in omental and subcutaneous
    adipose tissues. Expressed in heart, cornea, liver, kidney and spleen

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ADIRF

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of mammals.

    Orthologs for ADIRF gene from 1/4 species (see all 4)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia C4H10orf1161 chromosome 4 open reading frame, human C10orf116 87.21(n)
    84.93(a)
      100683409  XM_003434492.1  XP_003434540.1 


    ENSEMBL Gene Tree for ADIRF (if available)
    TreeFam Gene Tree for ADIRF (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    3 diseases for ADIRF:    About MalaCards
    obesity    gastric cancer    alzheimer's disease


    ADIRF for disorders           About GeneDecksing


    Export disorders for ADIRF gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ADIRF gene, integrated from 9 sources (see all 14):
    (articles sorted by number of sources associating them with ADIRF)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A Novel pro-adipogenesis factor abundant in adipose ti ssues and over-expressed in obesity acts upstream of PPARg and C/EBPa (PubMed id 23239344)1, 2, 3 Ni Y....Guo X. (2012)
    2. APM2 is a novel mediator of cisplatin resistance in a variety of cancer cell types regardless of p53 or MMR status. (PubMed id 19444912)1, 2 Scott B.J....Ng C.E. (2009)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. cDNA cloning and expression of a novel adipose specific collagen-like factor, apM1 (AdiPose Most abundant Gene transcript 1). (PubMed id 8619847)1, 3 Maeda K....Matsubara K. (1996)
    5. Overexpression of C10orf116 promotes proliferation, in hibits apoptosis and enhances glucose transport in 3T3-L1 adipocytes. (PubMed id 23467766)1 Chen L....Guo X.R. (2013)
    6. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    8. A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206)1 Vinayagam A....Wanker E.E. (2011)
    9. Transcriptomic and genetic studies identify IL-33 as a candidate gene for Alzheimer's disease. (PubMed id 19204726)1 Chapuis J....Lambert J.C. (2009)
    10. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PubMed id 15851553)1 Ozyildirim A.M....Laurie G.W. (2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10974 HGNC: 24043 AceView: SNCGandC10orf116andKIAA1975 Ensembl:ENSG00000148671 euGenes: HUgn10974
    ECgene: ADIRF H-InvDB: ADIRF

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ADIRF Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ADIRF gene:
    Search GeneIP for patents involving ADIRF

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
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