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Aliases for ADIPOQ-AS1 Gene

Subcategory (RNA class) for ADIPOQ-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADIPOQ-AS1 Gene

  • ADIPOQ Antisense RNA 1 2 3 5
  • ADIPOQ Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ADIPOQ-AS1 Gene

Previous GeneCards Identifiers for ADIPOQ-AS1 Gene

  • GC00U933941
  • GC03M186570

Summaries for ADIPOQ-AS1 Gene

GeneCards Summary for ADIPOQ-AS1 Gene

ADIPOQ-AS1 (ADIPOQ Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADIPOQ-AS1 Gene

Genomics for ADIPOQ-AS1 Gene

Regulatory Elements for ADIPOQ-AS1 Gene

Enhancers for ADIPOQ-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G186995 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -143.4 -143436 7.8 HDGF PKNOX1 FOXA2 MLX YY1 ZNF766 ZNF207 FOS ZNF263 MXD4 ADIPOQ-AS1 ADIPOQ ST6GAL1 RTP1 GC03P186996 GC03P186997 PIR46786
GH03G187019 2 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -168.6 -168586 11.0 HDGF HNRNPUL1 PKNOX1 FOXA2 ARNT WRNIP1 ARID4B YBX1 DMAP1 YY1 ST6GAL1 ADIPOQ ADIPOQ-AS1 RTP4 EIF4A2 TBCCD1 RTP1 GC03P186997 GC03P186996 PIR46786
GH03G186947 1.5 VISTA ENCODE dbSUPER 11.1 -92.8 -92783 3.6 HNRNPUL1 PKNOX1 FOXA2 ATF1 CREB3L1 YY1 TCF12 ZNF766 GATA2 JUNB ADIPOQ-AS1 ADIPOQ ST6GAL1 GC03P186932 LOC101929079
GH03G187038 1.6 Ensembl ENCODE dbSUPER 10.3 -185.5 -185543 7.3 FOXA2 PKNOX1 MLX ARID4B DMAP1 YY1 SLC30A9 CBX5 ZNF143 FOS ADIPOQ RFC4 SNORA63 SNORA81 EIF4A2 ENSG00000200418 ADIPOQ-AS1 ST6GAL1 PIR46786 GC03P186997
GH03G186990 1.4 Ensembl ENCODE dbSUPER 11.4 -135.7 -135719 2.7 ELF3 FOXA2 ARID4B RAD21 RARA YY1 NFYC CEBPB NR2F2 NFIC ADIPOQ-AS1 ADIPOQ LOC101929079 GC03P186932
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ADIPOQ-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ADIPOQ-AS1 Gene

Chromosome:
3
Start:
186,851,886 bp from pter
End:
186,856,123 bp from pter
Size:
4,238 bases
Orientation:
Minus strand

Genomic View for ADIPOQ-AS1 Gene

Genes around ADIPOQ-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADIPOQ-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADIPOQ-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADIPOQ-AS1 Gene

Proteins for ADIPOQ-AS1 Gene

Post-translational modifications for ADIPOQ-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADIPOQ-AS1 Gene

Domains & Families for ADIPOQ-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADIPOQ-AS1 Gene

Function for ADIPOQ-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADIPOQ-AS1 Gene

Localization for ADIPOQ-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ADIPOQ-AS1 Gene

Pathways & Interactions for ADIPOQ-AS1 Gene

SuperPathways for ADIPOQ-AS1 Gene

No Data Available

Interacting Proteins for ADIPOQ-AS1 Gene

Gene Ontology (GO) - Biological Process for ADIPOQ-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADIPOQ-AS1 Gene

Drugs & Compounds for ADIPOQ-AS1 Gene

No Compound Related Data Available

Transcripts for ADIPOQ-AS1 Gene

mRNA/cDNA for ADIPOQ-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ADIPOQ-AS1 Gene

No ASD Table

Relevant External Links for ADIPOQ-AS1 Gene

GeneLoc Exon Structure for
ADIPOQ-AS1
ECgene alternative splicing isoforms for
ADIPOQ-AS1

Expression for ADIPOQ-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADIPOQ-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADIPOQ-AS1 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x20.2), Adipose - Subcutaneous (x18.6), and Breast - Mammary Tissue (x8.1).

SOURCE GeneReport for Unigene cluster for ADIPOQ-AS1 Gene:

Hs.638968
genes like me logo Genes that share expression patterns with ADIPOQ-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADIPOQ-AS1 Gene

Orthologs for ADIPOQ-AS1 Gene

Evolution for ADIPOQ-AS1 Gene

ENSEMBL:
Gene Tree for ADIPOQ-AS1 (if available)
TreeFam:
Gene Tree for ADIPOQ-AS1 (if available)

No data available for Orthologs for ADIPOQ-AS1 Gene

Paralogs for ADIPOQ-AS1 Gene

No data available for Paralogs for ADIPOQ-AS1 Gene

Variants for ADIPOQ-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADIPOQ-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs121917815 Pathogenic 186,854,303(+) TATAC(C/T)GCTCA nc-transcript-variant, reference, missense
rs1000844554 -- 186,854,422(+) TTCCA(C/T)TGCAA nc-transcript-variant, reference, synonymous-codon
rs1001164255 -- 186,854,386(+) AATCA(A/G)CAAAA nc-transcript-variant, reference, synonymous-codon
rs1001682500 -- 186,852,709(+) GATGG(A/G)TTCTT intron-variant, nc-transcript-variant
rs1002025046 -- 186,853,467(+) GACTT(G/T)GGCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ADIPOQ-AS1 Gene

Variant ID Type Subtype PubMed ID
esv34136 CNV loss 18971310
esv3598999 CNV gain 21293372
esv3893839 CNV gain 25118596
nsv1001111 CNV gain 25217958
nsv1010626 CNV loss 25217958
nsv1012615 CNV gain 25217958
nsv4155 CNV deletion 18451855
nsv508263 CNV deletion 20534489

Relevant External Links for ADIPOQ-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADIPOQ-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADIPOQ-AS1 Gene

Disorders for ADIPOQ-AS1 Gene

Relevant External Links for ADIPOQ-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADIPOQ-AS1

No disorders were found for ADIPOQ-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADIPOQ-AS1 Gene

Publications for ADIPOQ-AS1 Gene

  1. Clear detection of ADIPOQ locus as the major gene for plasma adiponectin: results of genome-wide association analyses including 4659 European individuals. (PMID: 20018283) Heid I.M. … van Duijn C.M. (Atherosclerosis 2010) 3 64
  2. Genome-wide linkage and association analyses to identify genes influencing adiponectin levels: the GEMS Study. (PMID: 19165155) Ling H. … Mitchell B.D. (Obesity (Silver Spring) 2009) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ADIPOQ-AS1 Gene

Sources for ADIPOQ-AS1 Gene

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