Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ADI1 Gene

protein-coding   GIFtS: 54
GCID: GC02M003501

acireductone dioxygenase 1

 Explore 13 diseases affiliated with
ADI1 via our new
 Human Malady Compendium 
Biological research products
for ADI1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Acireductone Dioxygenase 11 2     HMFT16381
ARD1 2 3     1,2-Dihydroxy-3-Keto-5-Methylthiopentene Dioxygenase2
SIPL1 2 5     Ni-ARD2
APL11 2     Acireductone Dioxygenase (Ni(2+)-Requiring)2
MTCBP-11 3     Membrane-Type 1 Matrix Metalloproteinase Cytoplasmic Tail Binding Protein-12
Acireductone Dioxygenase (Fe(2+)-Requiring)2 3     MT1-MMP Cytoplasmic Tail-Binding Protein-12
Submergence-Induced Protein-Like Factor2 3     Submergence Induced Protein 22
Fe-ARD2 3     EC 1.13.11.543
MTCBP12 3     Sip-L3
FLJ109131     Membrane-Type 1 Matrix Metalloproteinase Cytoplasmic Tail-Binding Protein 13

External Ids:    HGNC: 305761   Entrez Gene: 552562   Ensembl: ENSG000001825517   OMIM: 6134005   UniProtKB: Q9BV573   

Export aliases for ADI1 gene to outside databases

Previous GC identifer: GC02M003480


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ADI1:
This gene encodes an enzyme that belongs to the aci-reductone dioxygenase family of metal-binding enzymes, which are
involved in methionine salvage. This enzyme may regulate mRNA processing in the nucleus, and may carry out different
functions depending on its localization. Related pseudogenes have been defined on chromosomes 8 and 20. (provided by
RefSeq, May 2010)

UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57
Function: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from
1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). Also down-regulates cell migration mediated by MMP14. Necessary
for hepatitis C virus replication in an otherwise non-permissive cell line

Gene Wiki entry for ADI1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NC_018913.1  NT_022221.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ADI1 gene promoter:
         USF1   C/EBPbeta   USF2   USF-1:USF-2   POU6F1 (c2)   Cdc5   POU2F1   POU2F1a   USF-1   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidADI1 promoter sequence
   Search SABiosciences Chromatin IP Primers for ADI1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ADI1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2p25.3   Ensembl cytogenetic band:  2p25.3   HGNC cytogenetic band: 2p25.2

ADI1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ADI1 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M003501:  view genomic region     (about GC identifiers)

Start:
3,501,690 bp from pter      End:
3,523,507 bp from pter
Size:
21,818 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57 (See protein sequence)
Recommended Name: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase  
Size: 179 amino acids; 21498 Da
Cofactor: Binds 1 iron ion per monomer. Can also use other divalent metal cations (By similarity)
Subunit: Monomer (By similarity). Interacts with MMP14
Subcellular location: Cytoplasm. Nucleus. Cell membrane; Peripheral membrane protein; Cytoplasmic side. Note=Localizes
to the plasma membrane when complexed to MMP14
Sequence caution: Sequence=AAL25800.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Sequence=BAD38646.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAD96187.1;
Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: D6W4Y3 Q53HW3 Q53QD3 Q57YV7 Q68CK2 Q6ZSF7 Q7Z512 Q96P85 Q9NV57
Alternative splicing: 2 isoforms:  Q9BV57-1   Q9BV57-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ADI1: NX_Q9BV57

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9BV57

  • ADI1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_060739.2  
    ENSEMBL proteins: 
     ENSP00000333666   ENSP00000371525   ENSP00000410178  
    Reactome Protein details: Q9BV57
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: ADI1
    OriGene Protein Over-expression Lysate: ADI1
    OriGene Custom Protein Services for ADI1 
    GenScript Custom Purified and Recombinant Proteins Services for ADI1
    Novus Biologicals ADI1 Protein
    Novus Biologicals ADI1 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ADI1

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--
    GO:0005737cytoplasm IDA11602742
    GO:0005794Golgi apparatus IDA--
    GO:0005829cytosol TAS--


    ADI1 for ontologies           About GeneDecksing



    ADI1 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    OriGene Antibodies (see all 2): ADI1
    OriGene Custom Antibody Services for ADI1 
    GenScript Custom Superior Antibodies Services for ADI1
    Novus Biologicals ADI1 Antibodies
    Search for Antibodies for ADI1 at Abcam  
    Uscn Antibodies for ADI1
    ThermoFisher Antibodies for ADI1

    Assay Products for ADI1: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for ADI1
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for ADI1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ADI1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR004313 Acireductn_dOase_family
     IPR011051 RmlC_Cupin
     IPR014710 RmlC-like_jellyroll

    Graphical View of Domain Structure for InterPro Entry Q9BV57

    ProtoNet protein and cluster: Q9BV57

    UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57
    Similarity: Belongs to the acireductone dioxygenase (ARD) family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57
    Function: Catalyzes the formation of formate and 2-keto-4-methylthiobutyrate (KMTB) from
    1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). Also down-regulates cell migration mediated by MMP14. Necessary
    for hepatitis C virus replication in an otherwise non-permissive cell line
    Catalytic activity: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O(2) = 4-(methylthio)-2-oxobutanoate + formate

    Enzyme Number (IUBMB): EC 1.13.11.541

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: ADI1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ADI1
    4 QIAGEN miScript miRNA Assays for microRNAs that regulate ADI1:
    hsa-miR-3910 hsa-miR-124 hsa-miR-506 hsa-miR-3714
    SwitchGear 3'UTR luciferase reporter plasmidADI1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ADI1 (see all 7)
    OriGene shRNA RFP: ADI1
    OriGene siRNA: ADI1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ADI1

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for ADI1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ADI1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ADI1
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ADI1 (NM_013358)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ADI1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ADI1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for ADI1
    Search LifeMap BioReagents cell lines for ADI1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ADI1

    Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI14718544
    GO:0010309acireductone dioxygenase [iron(II)-requiring] activity TAS--
    GO:0016491oxidoreductase activity IDA15938715
    GO:0046872metal ion binding IEA--


    ADI1 for ontologies           About GeneDecksing



    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Methionine salvage pathway
    Methionine salvage pathway1.00
    Metabolism of polyamines0.40
    S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation0.67
    2Sulfur amino acid metabolism
    Sulfur amino acid metabolism1.00
    Cysteine and methionine metabolism0.36
    3Metabolism
    Metabolism1.00
    Metabolic pathways0.38
    4Metabolism of amino acids and derivatives
    Metabolism of amino acids and derivatives1.00
    5methylthiopropionate biosynthesis
    methylthiopropionate biosynthesis1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    2 BioSystems Pathways for ADI1 
        S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation
    methylthiopropionate biosynthesis

    5        Reactome Pathways for ADI1
        Metabolism of polyamines
    Metabolism
    Methionine salvage pathway
    Sulfur amino acid metabolism
    Metabolism of amino acids and derivatives


    2         Kegg Pathways  (Kegg details for ADI1):
        Cysteine and methionine metabolism
    Metabolic pathways

    UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57
    Pathway: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from
    S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 5/6


    ADI1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ADI1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    5/20 Interacting proteins for ADI1 (Q9BV571, 3 ENSP000003336664) via UniProtKB, MINT, STRING, and/or I2D (see all 20)

    InteractantInteraction Details
    GeneCardExternal ID(s)
    MMP14P502811, 3, ENSP000003082084EBI-992807,EBI-992788 I2D: score=2 STRING: ENSP00000308208
    DBTP111823, ENSP000003591514I2D: score=2 STRING: ENSP00000359151
    ENOPH1Q9UHY73, ENSP000002739204I2D: score=1 STRING: ENSP00000273920
    OSTF1Q928823, ENSP000003408364I2D: score=2 STRING: ENSP00000340836
    RBKSQ9H4773, ENSP000003068174I2D: score=1 STRING: ENSP00000306817
    About this table

    Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000096sulfur amino acid metabolic process TAS--
    GO:0006595polyamine metabolic process TAS--
    GO:0019509L-methionine salvage from methylthioadenosine TAS--
    GO:0034641cellular nitrogen compound metabolic process TAS--
    GO:0044281small molecule metabolic process TAS--


    ADI1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ADI1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ADI1

    1 HMDB Compound for ADI1    About this table
    CompoundSynonyms CAS #PubMed Ids
    NickelCarbonyl nickel powder (see all 19)7440-02-0--
    5 Novoseek chemical compound relationships for ADI1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    methionine 50.2 7 17786183 (1), 18237192 (1), 17212658 (1), 14718544 (1)
    fe2+ 48.6 4 16989860 (3)
    carboxylate 48.3 3 17288413 (2), 17645333 (1)
    oxygen 14.5 3 18237192 (1)
    hydrogen 7.01 2 17645333 (1), 17288413 (1)

    Search CenterWatch for drugs/clinical trials and news about ADI1 / MTND 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ADI1 gene: 
    NM_018269.3  

    Unigene Cluster for ADI1:

    Acireductone dioxygenase 1
    Hs.502773  [show with all ESTs]
    Unigene Representative Sequence: AK127473
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000327435(uc002qxp.4) ENST00000382093(uc010yiq.2) ENST00000415131


    miRNA
    Products:
         
    OriGene 3'-UTR Clone: ADI1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ADI1
    4 QIAGEN miScript miRNA Assays for microRNAs that regulate ADI1:
    hsa-miR-3910 hsa-miR-124 hsa-miR-506 hsa-miR-3714
    SwitchGear 3'UTR luciferase reporter plasmidADI1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ADI1 (see all 7)
    OriGene shRNA RFP: ADI1
    OriGene siRNA: ADI1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ADI1
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ADI1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ADI1
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ADI1 (NM_013358)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ADI1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ADI1 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ADI1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ADI1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ADI1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ADI1

    Additional cDNA sequence: 

    AB073609.1 AB158319.1 AF087863.1 AF403478.1 AK001775.1 AK127473.1 AK222467.1 AK225278.1 
    BC001467.2 

    21 DOTS entries:

    DT.446852  DT.99956085  DT.101985071  DT.92451152  DT.99988886  DT.100827485  DT.100827486  DT.100827475 
    DT.100827480  DT.97794559  DT.100700644  DT.100827474  DT.100827495  DT.120990091  DT.91832014  DT.92451148 
    DT.92451149  DT.95256744  DT.95256759  DT.100827487  DT.75162181 

    24/493 AceView cDNA sequences (see all 493):

    CR593705 BF732945 CK819995 BQ225593 AI458820 BM978220 BM838044 BI545934 
    AI300683 AI476741 CR604779 AA725579 CR607574 CR592882 T35686 BQ005756 
    AA314427 AV653144 BC001467 AW075588 AA586973 BU621255 BM680542 BM998596 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ADI1    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c
    SP1:        -                             -                     
    SP2:                                                            
    SP3:                                -     -                     
    SP4:                                                            


    ECgene alternative splicing isoforms for ADI1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ADI1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GCTTGGAGTT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    ADI1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 2 LifeMap Cells 
    NameCategory
    PureStem™ progenitor E69 (Embryonic Progenitor Cell)
    PureStem™ progenitor T36 (Embryonic Progenitor Cell)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ADI1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ADI1

    SOURCE GeneReport for Unigene cluster: Hs.502773

    UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57
    Tissue specificity: Detected in heart, colon, lung, stomach, brain, spleen, liver, skeletal muscle and kidney

        SABiosciences Expression via Pathway-Focused PCR Array including ADI1: 
              Amino Acid Metabolism I in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ADI1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat ADI1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ADI1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ADI1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ADI1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ADI1 gene from 8/29 species (see all 29)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Adi11 , 5 acireductone dioxygenase 11, 5 84.54(n)1
    84.36(a)1
      12 (11.05 cM)5
    1049231  NM_134052.21  NP_598813.11 
     286752315 
    chicken
    (Gallus gallus)
    Aves ADI11 acireductone dioxygenase 1 73(n)
    78.21(a)
      421918  NM_001031089.1  NP_001026260.1 
    lizard
    (Anolis carolinensis)
    Reptilia ADI16
    --
    79(a)
    1 ↔ 1
    1(162371455-162381334)
    zebrafish
    (Danio rerio)
    Actinopterygii BC059549.12   -- 74.53(n)   324079  BC059549.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG320681 CG32068 56.07(n)
    50.87(a)
      326189  NM_001104107.1  NP_001097577.1 
    worm
    (Caenorhabditis elegans)
    Secernentea F42F12.46
    K07E1.16
    (see all 3)
    Protein F42F12.4
    1,2-dihydroxy-3-keto-5-methylthiopentene dioxygena...
    (see all 3)
    40(a)
    34(a)
    (see all 3)
    possible ortholog
    many → 1
    (see all 3)
    X(12351910-12352909)
    II(4550891-4552172)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons ARD11 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase more 62.02(n)
    62.79(a)
      827124  NM_117556.3  NP_567443.1 
    rice
    (Oryza sativa)
    Liliopsida NM_187765.12   -- 77.04(n)    NM_187765.1 


    ENSEMBL Gene Tree for ADI1 (if available)
    TreeFam Gene Tree for ADI1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ADI1 gene

    ADI1 for paralogs           About GeneDecksing


    4 Pseudogenes.org Pseudogenes for ADI1
    PGOHUM00000239760 PGOHUM00000244745 PGOHUM00000247657 PGOHUM00000249466


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/524 NCBI SNPs in ADI1 are shown (see all 524    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1932841261,2
    --3501255(+) CTATTA/GTATGC 1 -- ds50010--------
    rs1505833081,2
    --3501301(+) GTCTCA/GCTCTG 1 -- ds50010--------
    rs43983011,2
    C,--3501356(+) GCCTCG/AACCTC 1 -- ds50015Minor allele frequency- A:0.18NA WA EA 362
    rs1394813971,2
    --3501514(+) GAGTCC/TGCAGG 1 -- ds50010--------
    rs1825263711,2
    --3501531(+) GCCCCA/GCACGA 1 -- ds50010--------
    rs1880421211,2
    --3501535(+) CGCACA/GAGGAG 1 -- ds50010--------
    rs356742951,2
    C,F,--3501567(+) ACAGGG/AAAAAG 1 -- ds50017Minor allele frequency- A:0.19NA CSA WA EA 366
    rs1441928491,2
    --3501602(+) TAAAGA/CGATAG 1 -- ds50010--------
    rs739105751,2
    C,--3501614(+) TTATCA/GTATGA 1 -- ds50014Minor allele frequency- G:0.19WA NA EA 360
    rs1473397571,2
    --3501620(+) TATGAA/GTGTTT 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for ADI1 (3501690 - 3523507 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ADI1: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ADI1
    DNA2.0 Custom Variant and Variant Library Synthesis for ADI1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ADI1 for disorders           About GeneDecksing

    OMIM gene information: 613400    OMIM disorders: --

    13 diseases for ADI1:    About MalaCards
    atopic dermatitis    refsum disease    intrahepatic cholangiocarcinoma    klebsiella
    dermatitis    hepatitis c    cholangiocarcinoma    hepatoblastoma
    influenza    prostate cancer    hepatitis    pneumonia
    prostatitis

    Human Genome Epidemiology (HuGE) Navigator: ADI1 (1 document)

    Export disorders for ADI1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ADI1 gene, integrated from 9 sources (see all 33):
    (articles sorted by number of sources associating them with ADI1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Membrane-type 1 matrix metalloproteinase cytoplasmic tail-binding protein-1 is a new member of the cupin superfamily. A possible multifunctional protein acting as an invasion suppressor down- regulated in tumors. (PubMed id 14718544)1, 2, 3, 9 Uekita T.... Seiki M. (2004)
    2. Membrane-type 1 matrix metalloproteinase cytoplasmic tail binding protein-1 (MTCBP-1) acts as an eukaryotic aci-reductone dioxygenase (ARD) in the methionine salvage pathway. (PubMed id 15938715)1, 2, 3 Hirano W.... Seiki M. (2005)
    3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)1, 2 Hillier L.W....Wilson R.K. (2005)
    4. Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas. (PubMed id 15221005)1, 2 Yamada S....Nakagawara A. (2004)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    7. Identification of a hepatic factor capable of supporting hepatitis C virus replication in a nonpermissive cell line. (PubMed id 11602742)1, 2 Yeh C.-T.... Liaw Y.-F. (2001)
    8. Expression and function of the human androgen-responsive gene ADI1 in prostate cancer. (PubMed id 17786183)1, 9 Oram S.W....Wang Z. (2007)
    9. 293 cells over-expressing human ADI1 and CD81 are per missive for serum-derived hepatitis C virus infection. (PubMed id 19626614)1, 9 Cheng J.C....Yeh C.T. (2009)
    10. Regulated nucleo-cytoplasmic shuttling of human aci-reductone dioxygenase (hADI1) and its potential role in mRNA processing. (PubMed id 17212658)1, 9 Gotoh I....Seiki M. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 55256 HGNC: 30576 AceView: MTCBP-1 Ensembl:ENSG00000182551 euGenes: HUgn55256
    ECgene: ADI1 Kegg: 55256 H-InvDB: ADI1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ADI1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ADI1 gene:
    Search GeneIP for patents involving ADI1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     OriGene Antibodies for ADI1   OriGene shRNA RFP for ADI1  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ADI1   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for ADI1  
     OriGene Protein Over-expression Lysate for ADI1   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for ADI1   OriGene 3'-UTR Clone for ADI1  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ADI1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for ADI1  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for ADI1   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for ADI1   OriGene Custom Protein Services for ADI1  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ADI1
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ADI1
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ADI1
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ADI1
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ADI1
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ADI1
     GenScript Custom Purified and Recombinant Proteins Services for ADI1 GenScript cDNA clones with any tag delivered in your preferred vector for ADI1
     GenScript Custom Assay Services for ADI1 GenScript Custom Superior Antibodies Services for ADI1
     GenScript Custom overexpressing Cell Line Services for ADI1 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in ADI1 promoter
     Search Chromatin IP Primers for ADI1
     RT2 qPCR Primer Assay in human, mouse, rat ADI1
     GNC Network for ADI1
     SABiosciences PCR Arrays including human, mouse, rat ADI1
     Search Tocris compounds for ADI1
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     ADI1 antibodies
     ADI1 proteins
     ADI1 lysates
     Search for Antibodies for ADI1 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for ADI1
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     ADI1 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for ADI1
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ADI1
     SwitchGear 3'UTR luciferase reporter plasmids for ADI1
     SwitchGear Promoter luciferase reporter plasmids for ADI1
     ThermoFisher Antibodies for ADI1
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ADI1
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      ADI1 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 100 solr: 1.4