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Aliases & Descriptions for ADI1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| APL1 1, 2 | | ARD 1, 2, 3 | | EC 1.13.-.- 3 | | FLJ10913 1, 2 | | HMFT1638 1, 2 | | MTCBP-1 1, 2, 3 | | MTCBP1 2, 3 | | SIP-L 2 | | SIPL 1, 2, 3 |
| | | Descriptions |
|---|
| 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 | | Aci-reductone dioxygenase 3 | | MT1-MMP cytoplasmic tail-binding protein-1 2 | Membrane-type 1 matrix metalloproteinase cytoplasmic tail-binding protein 1 3 | | Submergence-induced protein 2 homolog 3 | | acireductone dioxygenase 1 2 | membrane-type 1 matrix metalloproteinase cytoplasmic tail binding protein-1 2 | | submergence induced protein 2 2 |
|
| | Search outside databases for aliases for ADI1 gene |
Summaries for ADI1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ADI1: This gene encodes an enzyme that belongs to the aci-reductone dioxygenase family of metal-binding enzymes, which are involved in methionine salvage. This enzyme may regulate mRNA processing in the nucleus, and may carry out different functions depending on its localization. A pseudogene that is located on chromosome 20 has been defined for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57Function: Has aci-reductone dioxygenase (ARD) activity and can function in the 5-methylthioadenosine (MTA) methionine salvage pathway. Down-regulates cell migration mediated by MMP14. Necessary for hepatitis C virus replication in an otherwise non-permissive cell lineGene Wiki entry for ADI1 |
Genomic Location for ADI1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ADI1 gene 
Entrez Gene cytogenetic band: 2p25.3 Ensembl cytogenetic band: 2p25.3 HGNC cytogenetic band: 2p25.2ADI1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M003480:
(about GC identifiers)
Start:
|
3,480,698 bp from pter |
End:
|
3,502,306 bp from pter |
Size:
|
21,609 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000002.10 NT_022221.12
| Proteins for ADI1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57 (See
protein sequence)Recommended Name: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase Size: 179 amino acids; 21498 Da
Cofactor: Binds 1 nickel ion per monomer. Can also use other divalent metal cations (By similarity)
Subunit: Interacts with MMP14
Subcellular location: Cell membrane; Peripheral membrane protein; Cytoplasmic side. Nucleus
Secondary accessions: Q53HW3 Q53QD3 Q57YV7 Q68CK2 Q6ZSF7 Q7Z512 Q96P85 Q9NV57Alternative splicing: 2 isoforms: Q9BV57-1 Q9BV57-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_060739.2
ENSEMBL proteins: ENSP00000371525 ENSP00000333666
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ADI1 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ADI1: Assays for ADI1: | Protein
Domains/ Families for ADI1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9BV57
ProtoNet protein and cluster: Q9BV57 UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57Similarity: Belongs to the acireductone dioxygenase (ARD) family | Gene Function for ADI1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018269
Applied Biosystems Silencer® siRNAs for ADI1
Sigma-Aldrich siRNA for ADI1  Sigma-Aldrich shRNA for ADI1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_018269                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_018269                                  untagged cDNA clone in CMV expression vector: NM_018269 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_018269
UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57Function: Has aci-reductone dioxygenase (ARD) activity and can function in the 5-methylthioadenosine (MTA) methionine salvage pathway. Down-regulates cell migration mediated by MMP14. Necessary for hepatitis C virus replication in an otherwise non-permissive cell lineEnzyme Number (IUBMB): EC 1.13.-.- 4 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
IPI | 14718544 | | GO:0016151 | nickel ion binding |
IEA | -- | | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
IEA | -- | | GO:0046872 | metal ion binding |
IEA | -- | About this table | Pathways & Interactions for ADI1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for ADI1 (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57Pathway: Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from (S)-methyl-5-thio-alpha-D-ribose 1-phosphate: step 5/6 Gene Network CentralTM Interacting Genes and Proteins Network for ADI1 
5/6 Interacting proteins for ADI1 (ENSP000003336663 Q9BV571) via UniProtKB, MINT, and/or STRING (see all 6
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ADI1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ADI1 5 Novoseek chemical compound relationships for ADI1 gene
About this table
|
Transcripts for ADI1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018269
Sigma-Aldrich siRNA for ADI1  Sigma-Aldrich shRNA for ADI1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_018269 REFSEQ mRNAs for ADI1 gene: NM_018269.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_018269               OriGene GFP tagged cDNA clone in CMV expression vector: NM_018269                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_018269                                  untagged cDNA clone in CMV expression vector: NM_018269  Additional cDNA sequence: AB073609.1 AB158319.1 AF087863.1 AF403478.1 AK001775.1 AK127473.1 AK222467.1 AK225278.1 BC001467.2 CR592882.1 CR593705.1 CR595221.1 CR595303.1 CR595663.1 CR598608.1 CR602689.1 CR603459.1 CR604038.1 CR604779.1 CR605242.1 CR607574.1 CR609057.1 CR611145.1 CR617197.1 CR624357.1 CR624573.1 CR625343.1 20 DOTS entries: DT.446852 DT.99956085 DT.101985071 DT.92451152 DT.99988886 DT.100827485 DT.100827486 DT.100827475 DT.100827480 DT.97794559 DT.100700644 DT.100827474 DT.100827495 DT.91832014 DT.92451148 DT.92451149 DT.95256744 DT.95256759 DT.100827487 DT.75162181 24/493 AceView cDNA sequences (see all 493
):BM718092 R24642 AA693413 BG776692 BI545934 AA485906 AA360213 BU508179 BU621255 AA554338 AA314427 BQ639872 CA310252 AI476741 AI458820 CR624573 AI186551 CR625343 AA845713 BE855740 T34519 CB161069 BM838044 CR605242
highest scoring ESTs for ADI1:AA425430 AB158319 AF087863 AK001775 AL528742 AL543802 AL546607 AL547323 AL547745 AL549060 Unigene Cluster for ADI1: Acireductone dioxygenase 1 Hs.502773 [show with all ESTs]Unigene Representative Sequence: AK127473
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for ADI1
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | |
| SP1: | |   | - |   | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ADI1
2 Ensembl transcripts including schematic representations: ENST00000382093
ENST00000327435
|
Expression for ADI1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ADI1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ADI1
1 / 2 / 3 7 probe-sets matching ADI1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCTTGGAGTT
SOURCE GeneReport for Unigene cluster: Hs.502773 UniProtKB/Swiss-Prot: MTND_HUMAN, Q9BV57Tissue specificity: Detected in heart, colon, lung, stomach, brain, spleen, liver, skeletal muscle and kidney |
Orthologs for ADI1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ADI1 gene from 5/17 species (see all 17
)
About this table Species with no ortholog for ADI1
ENSEMBL Gene Tree for ADI1 | Paralogs for ADI1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Pseudogenes
- 2 related pseudogenes
|
SNPs/Variants for ADI1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ADI1 (up to first 250kb)
|
Disorders & Mutations for ADI1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
| -- |
Medical News for ADI1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ADI1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/21 PubMed articles for ADI1 gene (see all 21
):- Membrane-type 1 matrix metalloproteinase cytoplasmic tail-binding protein-1 is a new member of the cupin superfamily. A possible multifunctional protein acting as an invasion suppressor down- regulated in tumors. (PubMed id 14718544)1, 2, 3, 4 Uekita T.... Seiki M. (2004)
- Membrane-type 1 matrix metalloproteinase cytoplasmic tail binding protein-1 (MTCBP-1) acts as an eukaryotic aci-reductone dioxygenase (ARD) in the methionine salvage pathway. (PubMed id 15938715)2, 3, 4 Hirano W....Seiki M. (2005)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)3, 4 Hillier L.W....Wilson R.K. (2005)
- Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas. (PubMed id 15221005)3, 4 Yamada S....Nakagawara A. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Identification of a hepatic factor capable of supporting hepatitis C virus replication in a nonpermissive cell line. (PubMed id 11602742)3, 4 Yeh C.-T.... Liaw Y.-F. (2001)
- Expression and function of the human androgen-responsive gene ADI1 in prostate cancer. (PubMed id 17786183)1, 3 Oram S.W....Wang Z. (2007)
- Regulated nucleo-cytoplasmic shuttling of human aci-reductone dioxygenase (hADI1) and its potential role in mRNA processing. (PubMed id 17212658)1, 3 Gotoh I....Seiki M. (2007)
- Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931)3 Ewing R.M....Figeys D. (2007)
|
Search for ADI1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ADI1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ADI1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ADI1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ADI1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ADI1:

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Incremental update: 13 Oct 2009
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