 |
 | Services
| |
 |
Aliases & Descriptions for ADH1C
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ADH3 2, 3, 5 | | EC 1.1.1.1 3 |
| | | Descriptions |
|---|
| ADH, gamma subunit 2 | | Alcohol dehydrogenase subunit gamma 3 | | alcohol dehydrogenase 1C (class I), gamma polypeptide 2 | | alcohol dehydrogenase 1C, gamma polypeptide 2 | | alcohol dehydrogenase 3 (class I), gamma polypeptide 2 | | aldehyde reductase 2 |
|
| | Search outside databases for aliases for ADH1C genePrevious GC identifers: GC04M100504 GC04M100386 GC04M100452 GC04M100614 |
Summaries for ADH1C(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ADH1C: This gene encodes class I alcohol dehydrogenase, gamma subunit, which is a member of the alcohol dehydrogenase family. Members of this enzyme family metabolize a wide variety of substrates, including ethanol, retinol, other aliphatic alcohols, hydroxysteroids, and lipid peroxidation products. Class I alcohol dehydrogenase, consisting of several homo- and heterodimers of alpha, beta, and gamma subunits, exhibits high activity for ethanol oxidation and plays a major role in ethanol catabolism. Three genes encoding alpha, beta and gamma subunits are tandemly organized in a genomic segment as a gene cluster. [provided by RefSeq] Gene Wiki entry for ADH1C |
Genomic Location for ADH1C
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ADH1C gene 
Entrez Gene cytogenetic band: 4q21-q23 Ensembl cytogenetic band: 4q23 HGNC cytogenetic band: 4q23ADH1C Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M100457:
(about GC identifiers)
Start:
|
100,476,672 bp from pter |
End:
|
100,492,940 bp from pter |
Size:
|
16,269 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr4- 100,416,547-100,431,165 |
RefSeq DNA sequence:- NC_000004.10 NT_016354.18
| Proteins for ADH1C
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ADH1G_HUMAN, P00326 (See
protein sequence)Recommended Name: Alcohol dehydrogenase 1C Size: 375 amino acids; 39868 Da
Cofactor: Binds 2 zinc ions per subunit
Subunit: Dimer of identical or non-identical chains of three types; alpha, beta and gamma
Subcellular location: Cytoplasm
Miscellaneous: There are 7 different ADH's isozymes in human: three belongs to class-I: alpha, beta, and gamma, one to class-II: pi, one to class-III: chi, one to class-IV: ADH7 and one to class-V: ADH6
PDB structures from and Proteopedia :1DDA (3D)
 1HT0 (3D)
 1U3W (3D)
 
Secondary accessions: Q4PJ18 Q5WRV0 Q6LBW4 Q6NWV0 Q6NZA7Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000660.1
ENSEMBL proteins: ENSP00000209668
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005737 | cytoplasm |
NAS | -- | About this table
Antibodies for ADH1C: Assays for ADH1C: | Protein
Domains/ Families for ADH1C(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P00326
ProtoNet protein and cluster: P00326 2 Blocks protein families: IPB002328 Zinc-containing alcohol dehydrogenase IPB013154 Alcohol dehydrogenase GroES-like
UniProtKB/Swiss-Prot: ADH1G_HUMAN, P00326Similarity: Belongs to the zinc-containing alcohol dehydrogenase family | Gene Function for ADH1C
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000669
Applied Biosystems Silencer® siRNAs for ADH1C
Sigma-Aldrich siRNA and siRNA Panels for ADH1C  Sigma-Aldrich shRNA for ADH1C  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000669                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000669                                  untagged cDNA clones in CMV expression vector (see all 2): NM_000669 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000669
UniProtKB/Swiss-Prot: ADH1G_HUMAN, P00326Catalytic activity: An alcohol + NAD(+) = an aldehyde or ketone + NADHEnzyme Number (IUBMB): EC 1.1.1.1 3 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Adh1):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ADH1C
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for ADH1C (Your Favorite Gene powered by Ingenuity) (see all 6
) 
Gene Network CentralTM Interacting Genes and Proteins Network for ADH1C 
5/37 Interacting proteins for ADH1C (ENSP000002096683) via UniProtKB, MINT, and/or STRING (see all 37
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006066 | cellular alcohol metabolic process |
NAS | -- | | GO:0055114 | oxidation reduction |
IEA | -- | About this table
|
Drugs & Compounds for ADH1C(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for ADH1C: Inhibitor |
Browse Tocris compounds for ADH1C 4 Novoseek chemical compound relationships for ADH1C gene
About this table
2 PharmGKB drug compound relationships for ADH1C geneAbout this table
|
Transcripts for ADH1C(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000669
Sigma-Aldrich siRNA and siRNA Panels for ADH1C  Sigma-Aldrich shRNA for ADH1C  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000669 REFSEQ mRNAs for ADH1C gene: NM_000669.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000669               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000669                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000669                                  untagged cDNA clones in CMV expression vector (see all 2): NM_000669  Additional cDNA sequence: BC062476.1 BC066227.1 BC066228.1 BC067419.1 BC067420.1 BC067421.1 BC067422.1 BC074771.2 BC074786.2 M12272.1 X04299.1 X04350.1 13 DOTS entries: DT.100030344 DT.95158774 DT.101985268 DT.415876 DT.100798841 DT.101985267 DT.121224284 DT.100798849 DT.91692319 DT.121224280 DT.100798839 DT.121224262 DT.95158779 24/475 AceView cDNA sequences (see all 475
):CB138477 CD172162 NM_000667 AA416884 CB162202 CD014078 AI275907 BM994680 BG149939 X04350 BP381861 BG564896 AU122403 BG546605 AA634614 CB147187 BQ786902 CB266463 M12963 CB148959 CB157572 BP381206 CB141250 AI262943
highest scoring ESTs for ADH1C:M12272 BC062476 BC066227 BC066228 BC067419 BC067420 BC067421 BC067422 CB114902 CB114919 Unigene Cluster for ADH1C: Alcohol dehydrogenase 1C (class I), gamma polypeptide Hs.654537 [show with all ESTs]Unigene Representative Sequence: NM_000669
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for ADH1C
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | · | 9c | |
| SP1: | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ADH1C
1 Ensembl transcript including schematic representation: ENST00000209668
|
Expression for ADH1C
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ADH1C expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ADH1C
1 / 2 / 3 4 probe-sets matching ADH1C gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATCTGGAGCA
SOURCE GeneReport for Unigene cluster: Hs.654537
Expression variation in blood from EXPOLDB for ADH1C |
Orthologs for ADH1C
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ADH1C gene from 5/8 species (see all 8
)
About this table Species with no ortholog for ADH1C
ENSEMBL Gene Tree for ADH1C | Paralogs for ADH1C(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ADH1C gene
- ADH42 ADH1B2 ADH52 ADH72
|
SNPs/Variants for ADH1C(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: ADH1G_HUMAN, P00326Polymorphism: Two main alleles are known, ADH3*1 or gamma-1 has Arg-272/Ile-350 while ADH3*2 or gamma-2 has Gln-272/Val-350. ADH3*1 is associated with a fast rate of ethanol oxidation and ADH3*2 with a slow rate
HapMap Linkage Disequilibrium images for ADH1C (up to first 250kb)
|
Disorders & Mutations for ADH1C
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 103730 disorders: 168600 10/28 Novoseek disease relationships for ADH1C gene (see all 28
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| alcoholism |
77.42 |
31 |
15519646 (3), 8773821 (3), 12710951 (2), 15902904 (2) (see all 20) |
| pharyngeal cancer |
70.14 |
3 |
9637146 (1), 10925369 (1), 9390539 (1) |
| pancreatitis alcoholic |
64.04 |
3 |
8985275 (1), 15220553 (1), 8986224 (1) |
| alcoholic cirrhosis |
59.81 |
5 |
1592339 (2), 15220553 (1), 11748356 (1), 11966948 (1) |
| liver diseases alcoholic |
58.88 |
5 |
15519646 (3), 9731720 (2) |
| chronic pancreatitis |
49.97 |
5 |
16239350 (1), 17454860 (1), 18773092 (1), 11966948 (1) (see all 5) |
| oropharyngeal cancer |
43.92 |
1 |
9050916 (1) |
| oral cancer |
43.81 |
2 |
11802217 (1) |
| cirrhosis |
42.50 |
7 |
8985275 (1), 17454860 (1), 1592339 (1), 15519646 (1) (see all 5) |
| pancreatitis |
41.54 |
1 |
8985275 (1) |
About this table
2 PharmGKB disease relationships for ADH1C geneAbout this table
Human Gene Mutation Database: ADH1C Genetic Association Database: ADH1C Human Genome Epidemiology Navigator: ADH1C (104 documents)
|
Medical News for ADH1C(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ADH1C (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/208 PubMed articles for ADH1C gene (see all 208
):- A prospective study of the effect of alcohol consumption and ADH3 genotype on plasma steroid hormone levels and breast cancer risk. (PubMed id 11045794)1, 3, 6 Hines L.M....Hunter D.J. (2000)
- Alcohol dehydrogenase type 3 (ADH3) and the risk of bladder cancer. (PubMed id 11752857)1, 3, 6 van Dijk B....Kiemeney L.A. (2001)
- Alcohol consumption and high-density lipoprotein levels: the effect of ADH1C genotype, gender and menopausal status. (PubMed id 16051248)1, 3, 6 Hines L.M....Rimm E.B. (2005)
- Genetic polymorphisms of ADH2, ADH3, CYP4502E1 Dra-I and Pst-I, and ALDH2 in Spanish men: lack of association with alcoholism and alcoholic liver disease. (PubMed id 15519646)1, 3, 6 Vidal F....Richart C. (2004)
- Alcohol dehydrogenase 3 genotype as a risk factor for upper aerodigestive tract cancers. (PubMed id 14732773)1, 3, 6 Nishimoto I.N....Kowalski L.P. (2004)
- Alcohol dehydrogenase 3 and risk of squamous cell carcinomas of the head and neck. (PubMed id 15767341)1, 3, 6 Wang D....Haugen T.H. (2005)
- Alcohol dehydrogenase 3, glutathione S-transferase M1 and T1 polymorphisms, alcohol consumption and hepatocellular carcinoma (Italy). (PubMed id 16132793)1, 3, 6 Covolo L....Donato F. (2005)
- Role of epoxide hydrolase, NAD(P)H:quinone oxidoreductase, cytochrome P450 2E1 or alcohol dehydrogenase genotypes in susceptibility to colorectal cancer. (PubMed id 16039674)1, 3, 6 van der Logt E.M....Peters W.H. (2006)
- Alcohol and aldehyde dehydrogenase polymorphisms in men with type I and Type II alcoholism. (PubMed id 15863807)1, 3, 6 Chai Y.G....Choi I.G. (2005)
- ADH1B*1, ADH1C*2, DRD2 (-141C Ins), and 5-HTTLPR are associated with alcoholism in Mexican American men living in Los Angeles. (PubMed id 15318112)1, 3, 6 Konishi T....Wan Y.J. (2004)
|
Search for ADH1C
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ADH1C
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ADH1C
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ADH1C(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| NIEHS-SNPs | http://egp.gs.washington.edu/data/adh1c/ |
|
| | | About This Section
| --
| Services for ADH1C(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ADH1C:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for ADH1C |
|
 |
 | | | |
GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
|