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Aliases & Descriptions for ADH1B
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ADH2 2, 3, 5 | | DKFZp686C06125 2 | | EC 1.1.1.1 3 |
| | | Descriptions |
|---|
| ADH, beta subunit 2 | | Alcohol dehydrogenase subunit beta 3 | | alcohol dehydrogenase 1B (class I), beta polypeptide 2 | | alcohol dehydrogenase 2 (class I), beta polypeptide 2 | | aldehyde reductase 2 | | class I alcohol dehydrogenase, beta subunit 2 |
|
| | Search outside databases for aliases for ADH1B genePrevious GC identifers: GC04M100473 GC04M100451 GC04M100577 |
Summaries for ADH1B(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ADH1B: The protein encoded by this gene is a member of the alcohol dehydrogenase family. Members of this enzyme family metabolize a wide variety of substrates, including ethanol, retinol, other aliphatic alcohols, hydroxysteroids, and lipid peroxidation products. This encoded protein, consisting of several homo- and heterodimers of alpha, beta, and gamma subunits, exhibits high activity for ethanol oxidation and plays a major role in ethanol catabolism. Three genes encoding alpha, beta and gamma subunits are tandemly organized in a genomic segment as a gene cluster. [provided by RefSeq] Gene Wiki entry for ADH1B |
Genomic Location for ADH1B
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ADH1B gene 
Entrez Gene cytogenetic band: 4q21-q23 Ensembl cytogenetic band: 4q23 HGNC cytogenetic band: 4q23ADH1B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M100456:
(about GC identifiers)
Start:
|
100,445,157 bp from pter |
End:
|
100,461,581 bp from pter |
Size:
|
16,425 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000004.10 NT_016354.18
| Proteins for ADH1B
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ADH1B_HUMAN, P00325 (See
protein sequence)Recommended Name: Alcohol dehydrogenase 1B Size: 375 amino acids; 39855 Da
Cofactor: Binds 2 zinc ions per subunit
Subunit: Dimer of identical or non-identical chains of three types; alpha, beta and gamma
Subcellular location: Cytoplasm
Miscellaneous: There are 7 different ADH's isozymes in human: three belongs to class-I: alpha, beta, and gamma, one to class-II: pi, one to class-III: chi, one to class-IV: ADH7 and one to class-V: ADH6
PDB structures from and Proteopedia :1DEH (3D)
 1HDX (3D)
 1HDY (3D)
 1HDZ (3D)
 1HSZ (3D)
 1HTB (3D)
 1U3U (3D)
 1U3V (3D)
 3HUD (3D)
 
Secondary accessions: Q13711 Q4ZGI9 Q96KI7Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000659.2
ENSEMBL proteins: ENSP00000378351 ENSP00000306606
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ADH1B 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005737 | cytoplasm |
IEA | -- | About this table
Antibodies for ADH1B: Assays for ADH1B: | Protein
Domains/ Families for ADH1B(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P00325
ProtoNet protein and cluster: P00325 2 Blocks protein families: IPB002328 Zinc-containing alcohol dehydrogenase IPB013154 Alcohol dehydrogenase GroES-like
UniProtKB/Swiss-Prot: ADH1B_HUMAN, P00325Similarity: Belongs to the zinc-containing alcohol dehydrogenase family | Gene Function for ADH1B
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000668
Applied Biosystems Silencer® siRNAs for ADH1B
Sigma-Aldrich siRNA and siRNA Panels for ADH1B  Sigma-Aldrich shRNA Panels and shRNA for ADH1B  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000668                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000668                                  untagged cDNA clone in CMV expression vector: NM_000668 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000668
UniProtKB/Swiss-Prot: ADH1B_HUMAN, P00325Catalytic activity: An alcohol + NAD(+) = an aldehyde or ketone + NADHEnzyme Number (IUBMB): EC 1.1.1.1 5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ADH1B
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for ADH1B (Your Favorite Gene powered by Ingenuity) (see all 6
) 
Gene Network CentralTM Interacting Genes and Proteins Network for ADH1B 
5/45 Interacting proteins for ADH1B (ENSP000003066063) via UniProtKB, MINT, and/or STRING (see all 45
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ADH1B(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ADH1B 6 Novoseek chemical compound relationships for ADH1B gene
About this table
2 PharmGKB drug compound relationships for ADH1B geneAbout this table
|
Transcripts for ADH1B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000668
Sigma-Aldrich siRNA and siRNA Panels for ADH1B  Sigma-Aldrich shRNA Panels and shRNA for ADH1B  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000668 REFSEQ mRNAs for ADH1B gene: NM_000668.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000668               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000668                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000668                                  untagged cDNA clone in CMV expression vector: NM_000668  Additional cDNA sequence: AF153821.1 AK299409.1 AK301018.1 AK303945.1 AK304396.1 AK311712.1 AK316501.1 BC033009.2 D00137.1 M21692.1 M24317.1 X03350.1 24/28 DOTS entries (see all 28
): DT.91692319 DT.100798841 DT.100798848 DT.99980497 DT.121224179 DT.100798847 DT.91670613 DT.92469079 DT.121224294 DT.121224163 DT.92469055 DT.95283613 DT.121224238 DT.454964 DT.100798850 DT.92469117 DT.95158780 DT.121224235 DT.100001280 DT.121224120 DT.121224260 DT.415876 DT.91698740 DT.95361176 24/475 AceView cDNA sequences (see all 475
):CB148959 CB138477 BM975207 CB120359 CB147446 BC074786 AA634614 BI517854 AU121675 AV681854 CB138240 AA903791 CB148337 BQ786902 C00945 AV709059 D00137 CB138242 AU122403 BC074738 BM856511 CB266463 AU076586 CB154296
highest scoring ESTs for ADH1B:CD515958 BX472537 BX481224 BX501680 BX647469 AV646555 X03350 AA708155 AU121611 AU121675 Unigene Cluster for ADH1B: Alcohol dehydrogenase 1B (class I), beta polypeptide Hs.4 [show with all ESTs]Unigene Representative Sequence: AF153821
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000394887
ENST00000305046
|
Expression for ADH1B
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ADH1B expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ADH1B
1 / 2 / 3 9 probe-sets matching ADH1B gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CAAAGATTAT
SOURCE GeneReport for Unigene cluster: Hs.4
Expression variation in blood from EXPOLDB for ADH1B |
Orthologs for ADH1B
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ADH1B gene from 5/8 species (see all 8
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
chimpanzee (Pan troglodytes) |
ADH1B1 |
-- |
alcohol dehydrogenase 1B (class I), beta polypeptide |
99.29(n) 99.47(a) |
461396 NM_001034158.1 NP_001029330.1 |
chicken (Gallus gallus) |
ADH1B1 |
-- |
alcohol dehydrogenase 1B (class I), beta polypeptide |
67.39(n) 67.48(a) |
771920 XM_001234262.1 XP_001234263.1 |
baker's yeast (Saccharomyces cerevisiae) |
ADH1(YOL086C)4 |
15(160594-159548) |
Alcohol dehydrogenase, fermentative isozyme active more |
-- |
854068 NP_014555.1 |
African clawed frog (Xenopus laevis) |
MGC685072 |
-- |
hypothetical protein MGC68507 |
73.24(n) |
BC061682.1 |
rainbow trout (Oncorhynchus mykiss) |
BX862123.12 |
-- |
-- |
74.77(n) |
BX862123.1 |
About this table Species with no ortholog for ADH1B
ENSEMBL Gene Tree for ADH1B | Paralogs for ADH1B(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ADH1B gene
- ADH1C2 ADH42 ADH52 ADH72
|
SNPs/Variants for ADH1B(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: ADH1B_HUMAN, P00325Polymorphism: Three alleles are known: ADH1B*1 (ADH2*1) corresponding to variant beta-1, ADH1B*2 (ADH2*2) corresponding to variant beta-2, ADH1B*3 (ADH2*3) corresponding to variant beta-3. The sequence shown is that of allele ADH1B*1. The ADH1B*2 allele frequency in orientals is approximately 75%, whereas it is less than 5% in most Caucasian populations
HapMap Linkage Disequilibrium images for ADH1B (up to first 250kb)
|
Disorders & Mutations for ADH1B
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 103720 disorders: 103780 10/26 Novoseek disease relationships for ADH1B gene (see all 26
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| alcoholism |
81.80 |
62 |
7625477 (4), 18299763 (3), 15519646 (3), 8773821 (3) (see all 35) |
| pancreatitis alcoholic |
70.56 |
6 |
8985275 (1), 15220553 (1), 11117576 (1), 8986224 (1) (see all 5) |
| alcoholic cirrhosis |
63.41 |
7 |
15220553 (1), 8845660 (1), 11748356 (1), 11966948 (1) (see all 5) |
| liver diseases alcoholic |
61.42 |
6 |
15519646 (3), 8591846 (1), 9194910 (1) |
| chronic pancreatitis |
53.98 |
6 |
17454860 (1), 18773092 (1), 11966948 (1), 1937384 (1) (see all 5) |
| macrocytosis |
44.86 |
1 |
16759795 (1) |
| pancreatitis |
40.75 |
2 |
8985275 (1), 10235286 (1) |
| genetic susceptibility |
39.42 |
1 |
16270392 (1) |
| fetal alcohol syndrome |
38.87 |
2 |
17618743 (1), 12461493 (1) |
| cirrhosis |
37.76 |
6 |
8985275 (1), 12915519 (1), 17454860 (1), 15519646 (1) (see all 5) |
About this table
2 PharmGKB disease relationships for ADH1B geneAbout this table
Human Gene Mutation Database: ADH1B Genetic Association Database: ADH1B Human Genome Epidemiology Navigator: ADH1B (143 documents)
|
Medical News for ADH1B(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ADH1B (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/294 PubMed articles for ADH1B gene (see all 294
):- Protective association of genetic variation in alcohol dehydrogenase with alcohol dependence in Native American Mission Indians. (PubMed id 12505800)1, 3, 7 Wall T.L....Ehlers C.L. (2003)
- Genetic polymorphisms of ADH2, ADH3, CYP4502E1 Dra-I and Pst-I, and ALDH2 in Spanish men: lack of association with alcoholism and alcoholic liver disease. (PubMed id 15519646)1, 3, 6 Vidal F....Richart C. (2004)
- [Polymorphism of alcohol metabolizing-related enzyme genes and its correlation with drinking-behaviors in 201 cases of Chinese Han healthy population.] (PubMed id 15842823)1, 3, 6 Cao X.R. and Wu D.S. (2005)
- Alcohol dehydrogenase 1B (ADH1B) genotype, alcohol consumption and breast cancer risk by age 50 years in a German case-control study. (PubMed id 15886702)1, 3, 6 Lilla C....Chang-Claude J. (2005)
- [Studies of genetic polymorphisms of ADH2 and ALDH2 among the Han population in Luoyang China] (PubMed id 16135443)1, 3, 6 Zhang Z.M....Shen F.M. (2002)
- Alcohol dehydrogenase-2 and aldehyde dehydrogenase-2 genotypes and male alcohol use disorders in Khon Kaen, north-east Thailand. (PubMed id 12519453)1, 3, 6 Osaka R....Fukuda K. (2003)
- Alcohol and ADH2 in Israel: Ashkenazis, Sephardics, and recent Russian immigrants. (PubMed id 12153842)1, 3, 6 Hasin D....Li T.K. (2002)
- Possible interaction of alcohol dehydrogenase and aldehyde dehydrogenase genes with the dopamine D2 receptor gene in anxiety-depressive alcohol dependence. (PubMed id 15084894)1, 3, 6 Huang S.Y....Lu R.B. (2004)
- Alcohol dehydrogenase 2 variant is associated with cerebral infarction and lacunae. (PubMed id 15534263)1, 3, 6 Suzuki Y....Ohta S. (2004)
- A case-control study of association between life-style, alcohol dehydrogenase 2 and aldehyde dehydrogenase 2 genotype and idiopathic osteonecrosis of the femoral head. (PubMed id 14768474)1, 3, 6 Sakata R. (2003)
|
Search for ADH1B
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ADH1B
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ADH1B
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ADH1B(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ADH1B(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ADH1B:

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Incremental update: 13 Oct 2009
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