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Aliases for ADGRF4 Gene

Aliases for ADGRF4 Gene

  • Adhesion G Protein-Coupled Receptor F4 2 3 5
  • G-Protein Coupled Receptor PGR18 3 4
  • GPR115 3 4
  • PGR18 3 4
  • Probable G-Protein Coupled Receptor 115 3
  • Seven Transmembrane Helix Receptor 3
  • G Protein-Coupled Receptor 115 2
  • G-Protein Coupled Receptor 115 4

External Ids for ADGRF4 Gene

Previous HGNC Symbols for ADGRF4 Gene

  • GPR115

Summaries for ADGRF4 Gene

Entrez Gene Summary for ADGRF4 Gene

  • Sequence analysis of this gene suggests that it is encodes a member of the superfamily of G protein-couple receptors. G protein-coupled receptors typically contain seven hydrophobic transmembrane domains, interact with guanine nucleotide binding regulatory proteins, and detect molecules outside the cell and act to transduce these signals into intracellular responses. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2016]

GeneCards Summary for ADGRF4 Gene

ADGRF4 (Adhesion G Protein-Coupled Receptor F4) is a Protein Coding gene. GO annotations related to this gene include G-protein coupled receptor activity and transmembrane signaling receptor activity. An important paralog of this gene is ADGRF2.

UniProtKB/Swiss-Prot for ADGRF4 Gene

  • Orphan receptor.

Gene Wiki entry for ADGRF4 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADGRF4 Gene

Genomics for ADGRF4 Gene

Regulatory Elements for ADGRF4 Gene

Enhancers for ADGRF4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F047519 1.1 Ensembl ENCODE 4.6 -164.5 -164456 4.3 ELF3 ARID4B ZSCAN9 CHAMP1 RARA ZNF121 CREM MIXL1 SMARCA4 RCOR2 CD2AP ENSG00000270761 ADGRF2 ADGRF4 ENSG00000199762 RPS12P14
GH06F047741 0.8 ENCODE 5.3 +56.2 56204 1.1 ZNF146 TBL1XR1 JUN BMI1 EBF1 ZBTB40 EED FOSL2 FOS CREM CD2AP ADGRF4 ENSG00000226594 RPL27AP7
GH06F046814 0.9 FANTOM5 ENCODE 4.1 -869.7 -869717 2.8 ZNF316 MAFF MAFG EMSY MAFK PLA2G7 LOC101926962 SLC25A27 MEP1A ADGRF4 GC06P046830
GH06F047697 1.2 Ensembl ENCODE 0.4 +14.0 14049 4.9 PKNOX1 SIN3A ZNF2 FOS ZNF263 JUNB TSHZ1 ZNF518A MBD2 STAT3 ADGRF2 ADGRF4 RN7SKP116
GH06F047669 1.3 FANTOM5 Ensembl ENCODE 0.3 -15.5 -15541 2.5 HDAC1 TBL1XR1 ZNF384 EBF1 ZIC2 ZNF2 ZNF316 ZNF366 ZNF362 HLF ADGRF2 OPN5 ADGRF4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ADGRF4 on UCSC Golden Path with GeneCards custom track

Genomic Location for ADGRF4 Gene

Chromosome:
6
Start:
47,685,864 bp from pter
End:
47,722,021 bp from pter
Size:
36,158 bases
Orientation:
Plus strand

Genomic View for ADGRF4 Gene

Genes around ADGRF4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADGRF4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADGRF4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADGRF4 Gene

Proteins for ADGRF4 Gene

  • Protein details for ADGRF4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IZF3-AGRF4_HUMAN
    Recommended name:
    Adhesion G protein-coupled receptor F4
    Protein Accession:
    Q8IZF3
    Secondary Accessions:
    • B3KTD0
    • Q2PNZ0
    • Q5T5B5
    • Q5T5B6
    • Q86SN9
    • Q8IXE6

    Protein attributes for ADGRF4 Gene

    Size:
    695 amino acids
    Molecular mass:
    77719 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • Most adhesion GPCRs undergo autoproteolysis at the GPS domain. ADGRF2 is not autoproteolyzed at the GPS motif because of the lack of a consensus catalytic triad sequence within GPS domain.
    SequenceCaution:
    • Sequence=AAN46671.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=BAC45257.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI15579.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for ADGRF4 Gene

Post-translational modifications for ADGRF4 Gene

  • Glycosylation at Asn 61, Asn 169, Asn 177, Asn 209, Asn 229, Asn 250, Asn 257, Asn 263, Asn 264, Asn 286, Asn 309, Asn 340, and Asn 379
  • Modification sites at PhosphoSitePlus

Other Protein References for ADGRF4 Gene

No data available for DME Specific Peptides for ADGRF4 Gene

Domains & Families for ADGRF4 Gene

Gene Families for ADGRF4 Gene

Suggested Antigen Peptide Sequences for ADGRF4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IZF3

UniProtKB/Swiss-Prot:

AGRF4_HUMAN :
  • Contains 1 GPS domain.
  • Belongs to the G-protein coupled receptor 2 family. Adhesion G-protein coupled receptor (ADGR) subfamily.
Domain:
  • Contains 1 GPS domain.
Family:
  • Belongs to the G-protein coupled receptor 2 family. Adhesion G-protein coupled receptor (ADGR) subfamily.
genes like me logo Genes that share domains with ADGRF4: view

Function for ADGRF4 Gene

Molecular function for ADGRF4 Gene

UniProtKB/Swiss-Prot Function:
Orphan receptor.

Gene Ontology (GO) - Molecular Function for ADGRF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IEA --
GO:0004930 G-protein coupled receptor activity IEA,TAS --
genes like me logo Genes that share ontologies with ADGRF4: view
genes like me logo Genes that share phenotypes with ADGRF4: view

Animal Models for ADGRF4 Gene

MGI Knock Outs for ADGRF4:

Animal Model Products

  • Taconic Biosciences Mouse Models for ADGRF4

miRNA for ADGRF4 Gene

miRTarBase miRNAs that target ADGRF4

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ADGRF4 Gene

Localization for ADGRF4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ADGRF4 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ADGRF4 gene
Compartment Confidence
plasma membrane 3

Gene Ontology (GO) - Cellular Components for ADGRF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA,TAS --
genes like me logo Genes that share ontologies with ADGRF4: view

Pathways & Interactions for ADGRF4 Gene

SuperPathways for ADGRF4 Gene

No Data Available

Interacting Proteins for ADGRF4 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000283303%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000283303 Q8IZF3-AGRF4_HUMAN for ADGRF4 Gene via STRING IID

Gene Ontology (GO) - Biological Process for ADGRF4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007166 cell surface receptor signaling pathway IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA,TAS --
genes like me logo Genes that share ontologies with ADGRF4: view

No data available for Pathways by source and SIGNOR curated interactions for ADGRF4 Gene

Transcripts for ADGRF4 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADGRF4 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1: - -
SP2: -
SP3:

Relevant External Links for ADGRF4 Gene

GeneLoc Exon Structure for
ADGRF4
ECgene alternative splicing isoforms for
ADGRF4

Expression for ADGRF4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADGRF4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ADGRF4 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ADGRF4 Gene



Protein tissue co-expression partners for ADGRF4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ADGRF4 Gene:

ADGRF4
genes like me logo Genes that share expression patterns with ADGRF4: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ADGRF4 Gene

Orthologs for ADGRF4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ADGRF4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GPR115 34 35
  • 99.33 (n)
dog
(Canis familiaris)
Mammalia GPR115 34 35
  • 87.93 (n)
cow
(Bos Taurus)
Mammalia GPR115 34 35
  • 85.58 (n)
rat
(Rattus norvegicus)
Mammalia Gpr115 34
  • 75.93 (n)
mouse
(Mus musculus)
Mammalia Gpr115 34 35
  • 75.69 (n)
Adgrf4 16
oppossum
(Monodelphis domestica)
Mammalia GPR115 35
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GPR115 35
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 35
  • 54 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CABZ01002470.1 35
  • 42 (a)
ManyToMany
BX545917.1 35
  • 28 (a)
ManyToMany
si:dkey-30j22.4 35
  • 27 (a)
ManyToMany
si:dkey-30j22.12 35
  • 25 (a)
ManyToMany
si:dkey-30j22.2 35
  • 22 (a)
ManyToMany
si:dkey-13i15.1 35
  • 12 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 24 (a)
ManyToMany
Species where no ortholog for ADGRF4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ADGRF4 Gene

ENSEMBL:
Gene Tree for ADGRF4 (if available)
TreeFam:
Gene Tree for ADGRF4 (if available)

Paralogs for ADGRF4 Gene

Paralogs for ADGRF4 Gene

genes like me logo Genes that share paralogs with ADGRF4: view

Variants for ADGRF4 Gene

Sequence variations from dbSNP and Humsavar for ADGRF4 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs572583506 A breast cancer sample 47,717,338(+) GAAAT(C/T)GAGGG reference, missense
rs386352312 Uncertain significance 47,714,668(+) GTGTT(G/T)CAGTG reference, missense
rs1013500 -- 47,696,913(-) CATGC(A/G)GTTCC upstream-variant-2KB, utr-variant-3-prime
rs1013501 -- 47,696,663(-) GGCCA(A/G)TCCCT upstream-variant-2KB, utr-variant-3-prime
rs1023080 -- 47,702,474(-) CATTT(A/G)TATAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ADGRF4 Gene

Variant ID Type Subtype PubMed ID
nsv1017113 CNV gain 25217958
nsv480369 CNV novel sequence insertion 20440878
nsv507328 OTHER sequence alteration 20534489

Variation tolerance for ADGRF4 Gene

Residual Variation Intolerance Score: 90.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.20; 61.95% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ADGRF4 Gene

Human Gene Mutation Database (HGMD)
ADGRF4
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADGRF4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ADGRF4 Gene

Disorders for ADGRF4 Gene

Relevant External Links for ADGRF4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADGRF4

No disorders were found for ADGRF4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADGRF4 Gene

Publications for ADGRF4 Gene

  1. International Union of Basic and Clinical Pharmacology. XCIV. Adhesion G protein-coupled receptors. (PMID: 25713288) Hamann J. … SchiAPth H.B. (Pharmacol. Rev. 2015) 2 3 4 64
  2. Novel human G protein-coupled receptors with long N-terminals containing GPS domains and Ser/Thr-rich regions. (PMID: 12435584) Fredriksson R. … Schioeth H.B. (FEBS Lett. 2002) 2 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The G protein-coupled receptor repertoires of human and mouse. (PMID: 12679517) Vassilatis D.K. … Gaitanaris G.A. (Proc. Natl. Acad. Sci. U.S.A. 2003) 3 4 64
  5. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64

Products for ADGRF4 Gene

Sources for ADGRF4 Gene

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