Free for academic non-profit institutions. Other users need a Commercial license

Aliases for ADGRD1-AS1 Gene

Subcategory (RNA class) for ADGRD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADGRD1-AS1 Gene

  • ADGRD1 Antisense RNA 1 2 3 5
  • Lung Adenocarcinoma-Associated Transcript 8 2 3
  • LACAT8 3

External Ids for ADGRD1-AS1 Gene

Summaries for ADGRD1-AS1 Gene

GeneCards Summary for ADGRD1-AS1 Gene

ADGRD1-AS1 (ADGRD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ADGRD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADGRD1-AS1 Gene

Genomics for ADGRD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for ADGRD1-AS1 Gene

Promoters and enhancers for ADGRD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I130994 Enhancer 0.5 ENCODE 556.9 -1.3 -1294 0.9 SKI SOX13 ARID4B SMAD4 RAD21 ADGRD1-AS1 PIR57533 ADGRD1 ENSG00000256204 GC12P130991 ENSG00000279128
GH12I130992 Enhancer 0.4 ENCODE 558.1 +1.3 1345 0.2 RFX1 EBF1 ZIC2 ADGRD1-AS1 PIR57533 GC12P130991 ADGRD1
GH12I130978 Enhancer 1.1 Ensembl ENCODE 6.8 +11.8 11838 6.4 HDGF PKNOX1 FOXA2 ARID4B FEZF1 ATF7 RUNX3 PPARG MEF2D NFIL3 ENSG00000279581 ADGRD1 ADGRD1-AS1 ENSG00000256204 GC12P130978 ENSG00000280002
GH12I131027 Enhancer 0.8 FANTOM5 ENCODE 6.5 -34.8 -34764 1.6 ZNF687 FOXA2 FOSL2 HNF4A FOS CUX1 FOXA1 ENSG00000279993 ADGRD1 ADGRD1-AS1 ENSG00000256810 GC12P130991
GH12I130986 Enhancer 0.6 ENCODE 7.9 +5.9 5852 3.6 DRAP1 SOX5 SOX13 TFAP4 SAP130 FOXA3 NFIL3 HNF1A POLR2A SCRT2 ENSG00000280002 ADGRD1 ADGRD1-AS1 ENSG00000279581
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ADGRD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ADGRD1-AS1 Gene

Genomic Locations for ADGRD1-AS1 Gene
chr12:130,990,138-130,993,976
(GRCh38/hg38)
Size:
3,839 bases
Orientation:
Minus strand
chr12:131,474,683-131,478,521
(GRCh37/hg19)

Genomic View for ADGRD1-AS1 Gene

Genes around ADGRD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADGRD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADGRD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADGRD1-AS1 Gene

Proteins for ADGRD1-AS1 Gene

Post-translational modifications for ADGRD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADGRD1-AS1 Gene

Domains & Families for ADGRD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADGRD1-AS1 Gene

Function for ADGRD1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADGRD1-AS1 Gene

Localization for ADGRD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ADGRD1-AS1 Gene

Pathways & Interactions for ADGRD1-AS1 Gene

SuperPathways for ADGRD1-AS1 Gene

No Data Available

Interacting Proteins for ADGRD1-AS1 Gene

Gene Ontology (GO) - Biological Process for ADGRD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADGRD1-AS1 Gene

Drugs & Compounds for ADGRD1-AS1 Gene

No Compound Related Data Available

Transcripts for ADGRD1-AS1 Gene

mRNA/cDNA for ADGRD1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ADGRD1-AS1 Gene

No ASD Table

Relevant External Links for ADGRD1-AS1 Gene

GeneLoc Exon Structure for
ADGRD1-AS1
ECgene alternative splicing isoforms for
ADGRD1-AS1

Expression for ADGRD1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADGRD1-AS1 Gene

Orthologs for ADGRD1-AS1 Gene

Evolution for ADGRD1-AS1 Gene

ENSEMBL:
Gene Tree for ADGRD1-AS1 (if available)
TreeFam:
Gene Tree for ADGRD1-AS1 (if available)

No data available for Orthologs for ADGRD1-AS1 Gene

Paralogs for ADGRD1-AS1 Gene

No data available for Paralogs for ADGRD1-AS1 Gene

Variants for ADGRD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADGRD1-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000039402 -- 130,990,328(-) A/C downstream_transcript_variant
rs1000178746 -- 130,995,833(-) A/G upstream_transcript_variant
rs1000280665 -- 130,995,491(-) A/T upstream_transcript_variant
rs1001085673 -- 130,991,418(-) T/C intron_variant
rs1001116340 -- 130,993,041(-) T/A intron_variant

Additional Variant Information for ADGRD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADGRD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ADGRD1-AS1 Gene

Disorders for ADGRD1-AS1 Gene

No disorders were found for ADGRD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADGRD1-AS1 Gene

Publications for ADGRD1-AS1 Gene

  1. The landscape of long noncoding RNAs in the human transcriptome. (PMID: 25599403) Iyer MK … Chinnaiyan AM (Nature genetics 2015) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for ADGRD1-AS1 Gene

Sources for ADGRD1-AS1 Gene

Content
Loading form....