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ADD3-AS1 Gene(RNA Gene)

ADD3 Antisense RNA 1

GCID:
GC10M109941
GIFtS:
17
Genes Participants
UDN Logo

Aliases for ADD3-AS1 Gene

Subcategory (RNA class) for ADD3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADD3-AS1 Gene

  • ADD3 Antisense RNA 1 2 3 5

External Ids for ADD3-AS1 Gene

Previous GeneCards Identifiers for ADD3-AS1 Gene

  • GC10M111702

Summaries for ADD3-AS1 Gene

GeneCards Summary for ADD3-AS1 Gene

ADD3-AS1 (ADD3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADD3-AS1 Gene

Genomics for ADD3-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for ADD3-AS1 Gene

Enhancers for ADD3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G109980 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +26.4 26379 2.5 BCOR HDAC1 PKNOX1 TBL1XR1 TAL1 DDX20 ZMYM3 FOSL1 TCF12 ZNF316 ADD3 ADD3-AS1 MXI1 XPNPEP1
GH10G109933 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.2 +73.3 73349 2.7 TFAP4 ZNF146 TEAD4 MAX ZNF384 RBBP5 CTBP1 GATA3 POLR2A FOS ADD3 ADD3-AS1 RNU4-5P XPNPEP1
GH10G109971 1.5 Ensembl ENCODE dbSUPER 12.1 +33.0 32968 7.6 PKNOX1 FOXA2 MLX WRNIP1 ARID4B FEZF1 DMAP1 ZNF2 ZNF48 ZNF143 ADD3 ADD3-AS1 XPNPEP1
GH10G109883 1.4 Ensembl ENCODE dbSUPER 10.7 +123.9 123891 1.4 WRNIP1 SIN3A KLF17 RAD21 RFX5 GLIS2 ZSCAN5C ZNF143 FOS DEK XPNPEP1 ADD3-AS1 ADD3 RNU4-5P
GH10G109921 1.2 ENCODE dbSUPER 11.8 +85.7 85673 3.1 ATF1 CREB3L1 ARID4B SIN3A BRCA1 YY1 ZNF143 ZNF207 ZNF263 SP3 ADD3-AS1 ADD3 RNU4-5P XPNPEP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ADD3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ADD3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000033239 481 4201 HDGF MLX ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF263 SP3 SP5

Genomic Location for ADD3-AS1 Gene

Chromosome:
10
Start:
109,940,104 bp from pter
End:
110,008,381 bp from pter
Size:
68,278 bases
Orientation:
Minus strand

Genomic View for ADD3-AS1 Gene

Genes around ADD3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADD3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADD3-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ADD3-AS1 Gene

Proteins for ADD3-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ADD3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADD3-AS1 Gene

Domains & Families for ADD3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADD3-AS1 Gene

Function for ADD3-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADD3-AS1 Gene

Localization for ADD3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ADD3-AS1 Gene

Pathways & Interactions for ADD3-AS1 Gene

SuperPathways for ADD3-AS1 Gene

PathCards logo More details on SuperPathways for ADD3-AS1
No Data Available

Interacting Proteins for ADD3-AS1 Gene

Gene Ontology (GO) - Biological Process for ADD3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADD3-AS1 Gene

Drugs & Compounds for ADD3-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ADD3-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for ADD3-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADD3-AS1 Gene

No ASD Table

Relevant External Links for ADD3-AS1 Gene

GeneLoc Exon Structure for
ADD3-AS1
ECgene alternative splicing isoforms for
ADD3-AS1

Expression for ADD3-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADD3-AS1 Gene

mRNA expression in normal human tissues for ADD3-AS1 Gene
mRNA expression by BioGPS for ADD3-AS1 GenemRNA expression by GTEx for ADD3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADD3-AS1 Gene

This gene is overexpressed in Testis (x18.3).
genes like me logo Genes that share expression patterns with ADD3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADD3-AS1 Gene

Orthologs for ADD3-AS1 Gene

Evolution for ADD3-AS1 Gene

ENSEMBL:
Gene Tree for ADD3-AS1 (if available)
TreeFam:
Gene Tree for ADD3-AS1 (if available)

No data available for Orthologs for ADD3-AS1 Gene

Paralogs for ADD3-AS1 Gene

No data available for Paralogs for ADD3-AS1 Gene

Variants for ADD3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADD3-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000065676 -- 109,959,888(+) TTTTC(C/T)GTGGA intron-variant
rs1000089165 -- 109,996,711(+) CTGAA(G/T)GTAGA intron-variant
rs1000160991 -- 109,990,289(+) ATGTT(A/G)CTGAA intron-variant
rs1000234614 -- 109,979,803(+) GGCCT(C/T)AAAAT intron-variant
rs1000270948 -- 109,983,505(+) AGAGA(C/T)GGTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ADD3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3448340 CNV insertion 20981092
esv3546843 CNV deletion 23714750
nsv1052255 CNV gain 25217958
nsv1122556 CNV deletion 24896259
nsv7211 OTHER inversion 18451855
nsv7547 CNV deletion 18451855
nsv951845 CNV duplication 24416366

Relevant External Links for ADD3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADD3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADD3-AS1 Gene

Disorders for ADD3-AS1 Gene

Relevant External Links for ADD3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADD3-AS1

No disorders were found for ADD3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADD3-AS1 Gene

Publications for ADD3-AS1 Gene

  1. Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2. (PMID: 20460270) Garcia-BarcelA^ M.M. … Tam P.K. (Hum. Mol. Genet. 2010) 3 64
  2. Mapping and characterization of novel (CAG)n repeat cDNAs from adult human brain derived by the oligo capture method. (PMID: 9417904) Reddy P.H. … Tagle D.A. (Genomics 1997) 3 64

Products for ADD3-AS1 Gene

Sources for ADD3-AS1 Gene

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