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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ADCK5 Gene

protein-coding   GIFtS: 50
GCID: GC08P145596

aarF domain containing kinase 5

 Explore 1 disease affiliated with
ADCK5 via our new
 Human Malady Compendium 
Biological research products
for ADCK5
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
AarF Domain Containing Kinase 51 2
FLJ354541
Uncharacterized AarF Domain-Containing Protein Kinase 52
EC 2.7.11.-3

External Ids:    HGNC: 217381   Entrez Gene: 2030542   Ensembl: ENSG000001731377   UniProtKB: Q3MIX33   

Export aliases for ADCK5 gene to outside databases

Previous GC identifers: GC08P145201 GC08P145602 GC08P145561 GC08P140711


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: ADCK5_HUMAN, Q3MIX3
Function: The function of this protein is not yet clear. It is not known if it has protein kinase activity and what
type of substrate it would phosphorylate (Ser, Thr or Tyr)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NC_018919.1  NT_037704.5  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ADCK5 gene promoter:
         AML1a   Pax-5   NRSF form 1   NRSF form 2   Max   c-Rel   PPAR-gamma1   STAT3   PPAR-gamma2   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidADCK5 promoter sequence
   Search SABiosciences Chromatin IP Primers for ADCK5

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ADCK5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24.3   Ensembl cytogenetic band:  8q24.3   HGNC cytogenetic band: 8q24.3

ADCK5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ADCK5 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P145596:  view genomic region     (about GC identifiers)

Start:
145,596,790 bp from pter      End:
145,618,457 bp from pter
Size:
21,668 bases      Orientation:
plus strand

1 alternative location:
Chr8+,PATCHES 145,514,185-145,533,385     

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ADCK5_HUMAN, Q3MIX3 (See protein sequence)
Recommended Name: Uncharacterized aarF domain-containing protein kinase 5  
Size: 580 amino acids; 65897 Da
Subcellular location: Membrane; Single-pass membrane protein (Potential)
Sequence caution: Sequence=AAH31570.1; Type=Erroneous initiation;
Secondary accessions: Q5U4P1 Q6P2S4 Q8N5V3

Explore the universe of human proteins at neXtProt for ADCK5: NX_Q3MIX3

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q3MIX3

  • ADCK5 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_777582.3  
    ENSEMBL proteins: 
     ENSP00000431875   ENSP00000310547   ENSP00000435155   ENSP00000436484  

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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ADCK5

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005739mitochondrion IEA--
    GO:0016021integral to membrane IEA--


    ADCK5 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ADCK5 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR004147 UbiB_dom
     IPR011009 Kinase-like_dom

    Graphical View of Domain Structure for InterPro Entry Q3MIX3

    ProtoNet protein and cluster: Q3MIX3

    1 Blocks protein family: IPB004147 ABC1 protein

    UniProtKB/Swiss-Prot: ADCK5_HUMAN, Q3MIX3
    Similarity: Belongs to the protein kinase superfamily. ADCK protein kinase family
    Similarity: Contains 1 protein kinase domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ADCK5_HUMAN, Q3MIX3
    Function: The function of this protein is not yet clear. It is not known if it has protein kinase activity and what
    type of substrate it would phosphorylate (Ser, Thr or Tyr)

    Enzyme Number (IUBMB): EC 2.7.11.-1

    miRNA
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    Inhib. RNA
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    OriGene shRNA RFP: ADCK5
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ADCK5

    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004674protein serine/threonine kinase activity IEA--


    ADCK5 for ontologies           About GeneDecksing


    4 GenomeRNAi human phenotypes for ADCK5:
     Decreased 12E8 tau but not tot  Decreased focal adhesion (FA)   Decreased substrate adherent c  Increased cell death HMECs cel 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ADCK5

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    3 Interacting proteins for ADCK5 (Q3MIX32 ENSP000003105474) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HSPA6ENSP000003102194STRING: ENSP00000310219
    RHODENSP000003085764STRING: ENSP00000308576
    --P310162MINT-8107659
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ADCK5
    Search CenterWatch for drugs/clinical trials and news about ADCK5 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ADCK5 gene: 
    NM_174922.3  

    Unigene Cluster for ADCK5:

    AarF domain containing kinase 5
    Hs.283374  [show with all ESTs]
    Unigene Representative Sequence: BC032402
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000534714 ENST00000526231 ENST00000533715 ENST00000529654(uc003zch.3 uc003zci.3)
    ENST00000308860 ENST00000525136 ENST00000532190 ENST00000526833

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    SwitchGear 3'UTR luciferase reporter plasmidADCK5 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ADCK5 (see all 7)
    OriGene shRNA RFP: ADCK5
    OriGene siRNA: ADCK5
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ADCK5
    Clone
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    Additional cDNA sequence: 

    AK092773.1 BC031570.1 BC032402.1 BC064345.1 BC085013.1 BC101659.1 BC143322.1 BC143326.1 

    10 DOTS entries:

    DT.100024901  DT.409623  DT.75178191  DT.95289249  DT.100813099  DT.95354659  DT.121469610  DT.121469613 
    DT.95369290  DT.97804287 

    24/75 AceView cDNA sequences (see all 75):

    BU528916 BC031570 BU622478 BC064345 AX747720 AK092773 BM930793 CR610562 
    BM549923 BU633298 CR605986 CA448067 NM_174922 CB106335 BM792180 BQ705949 
    BM919873 BC032402 BM046496 AW402168 CF140469 BG331613 BI767961 AI801085 

    GeneLoc Exon Structure

    5/14 Alternative Splicing Database (ASD) splice patterns (SP) for ADCK5 (see all 14)    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b · 10c ^ 11a · 11b ^ 12 ^ 13 ^ 14a · 14b ^ 15a · 15b ^ 16 ^
    SP1:                                -     -                       -     -                                                                       -               
    SP2:                                -                             -     -                                                                                       
    SP3:                                -     -                       -     -                                                                                       
    SP4:                                -     -                             -                                                                                       
    SP5:                                                                    -                                                                                       

    ExUns: 17 ^ 18 ^ 19 ^ 20
    SP1:                        
    SP2:                        
    SP3:                        
    SP4:                        
    SP5:                        


    ECgene alternative splicing isoforms for ADCK5

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ADCK5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CGGCTGACCG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See ADCK5 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ADCK5

    SOURCE GeneReport for Unigene cluster: Hs.283374
        SABiosciences Custom PCR Arrays for ADCK5
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ADCK5

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the last universal common ancestor (LUCA).

    Orthologs for ADCK5 gene from 6/27 species (see all 27)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia ADCK56
    --
    62(a)
    1 ↔ 1
    GL343636.1(104102-138111)
    zebrafish
    (Danio rerio)
    Actinopterygii adck51 aarF domain containing kinase 5 63.47(n)
    61.15(a)
      100001584  NM_001202526.1  NP_001189455.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG76161 CG7616 56.66(n)
    48.67(a)
      39260  NM_140189.2  NP_648446.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT5G248106
    AT1G659506
    (see all 13)
    aarF domain-containing kinase
    (see all 13)
    9(a)
    28(a)
    (see all 13)
    possible ortholog
    1 ↔ 1
    (see all 13)
    5(8516635-8522767)
    1(24546704-24551144)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 13)
    ELMO/CED-12 family protein, putative, expressed
    (see all 13)
    9(a)
    9(a)
    (see all 13)
    possible ortholog
    possible ortholog
    (see all 13)
    6(29515245-29522985)
    2(34366517-34372513)
    E. coli
    (Escherichia coli)
    Gamma proteobacteria ubiB6
    2-octaprenylphenol hydroxylase
    15(a)
    possible ortholog
    Chromosome(4018249-4019889)


    ENSEMBL Gene Tree for ADCK5 (if available)
    TreeFam Gene Tree for ADCK5 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ADCK5 gene
    ADCK12  
    1 SIMAP similar gene for ADCK5 using alignment to 3 protein entries:     ADCK5_HUMAN (see all proteins):
    ADCK1

    ADCK5 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/421 NCBI SNPs in ADCK5 are shown (see all 421    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1454168681,2
    --145595855(+) CTCCCA/GGGATG 1 -- us2k10--------
    rs1411794981,2
    --145595888(+) CCTTCA/GTTCAT 1 -- us2k10--------
    rs1870607421,2
    --145596055(+) CTCACA/GTCACG 1 -- us2k10--------
    rs1157641991,2
    F,--145596138(+) GTTGCC/TGAGGG 1 -- us2k12Minor allele frequency- T:0.04WA NA 238
    rs756744221,2
    C,--145596535(+) GGGCCA/CCTTGT 1 -- us2k15Minor allele frequency- C:0.50NA CSA EA 245
    rs1914849241,2
    --145596555(+) AGGGGC/TCACTG 1 -- us2k10--------
    rs1842782641,2
    --145596624(+) GGCCAC/TTGGTG 1 -- us2k10--------
    rs1887788931,2
    --145596626(+) CCACTG/TGTGGG 1 -- us2k10--------
    rs1449936531,2
    --145596712(+) GGCCAC/TTGGTG 1 -- us2k10--------
    rs1388650601,2
    --145596808(+) GCCAAA/GCTGAC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ADCK5 (145596790 - 145618457 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 8 variations for ADCK5
         6 CNVs: 23866 31458 70491 4613 3752 30306
         2 Indels: 28847 28848

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ADCK5
    DNA2.0 Custom Variant and Variant Library Synthesis for ADCK5

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ADCK5 for disorders           About GeneDecksing

    1 disease for ADCK5:    About MalaCards
    malaria

    Human Genome Epidemiology (HuGE) Navigator: ADCK5 (1 document)

    Export disorders for ADCK5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ADCK5 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ADCK5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)1, 2 Nusbaum C....Lander E.S. (2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Genetic variants in nuclear-encoded mitochondrial gen es influence AIDS progression. (PubMed id 20877624)1 Hendrickson S.L....O'Brien S.J. (2010)
    4. Patterns of somatic mutation in human cancer genomes. (PubMed id 17344846)2 Greenman C.... Stratton M.R. (2007)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 203054 HGNC: 21738 AceView: ADCK5 Ensembl:ENSG00000173137 euGenes: HUgn203054
    ECgene: ADCK5 H-InvDB: ADCK5

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ADCK5 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ADCK5 gene:
    Search GeneIP for patents involving ADCK5

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
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