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Aliases for ADAT1 Gene

Aliases for ADAT1 Gene

  • Adenosine Deaminase, TRNA Specific 1 2 3 5
  • TRNA-Specific Adenosine-37 Deaminase 3 4
  • HADAT1 3 4
  • TRNA-Specific Adenosine Deaminase 1 3
  • Adenosine Deaminase Acting On TRNA 3
  • EC 3.5.4.34 4
  • EC 3.5.4 61

External Ids for ADAT1 Gene

Previous GeneCards Identifiers for ADAT1 Gene

  • GC16M066563
  • GC16M076593
  • GC16M075371
  • GC16M075412
  • GC16M074190
  • GC16M075632
  • GC16M061385

Summaries for ADAT1 Gene

Entrez Gene Summary for ADAT1 Gene

  • This gene is a member of the ADAR (adenosine deaminase acting on RNA) family. Using site-specific adenosine modification, proteins encoded by these genes participate in the pre-mRNA editing of nuclear transcripts. The protein encoded by this gene, tRNA-specific adenosine deaminase 1, is responsible for the deamination of adenosine 37 to inosine in eukaryotic tRNA. Alternatively spliced transcript variants have been described. [provided by RefSeq, Jul 2010]

GeneCards Summary for ADAT1 Gene

ADAT1 (Adenosine Deaminase, TRNA Specific 1) is a Protein Coding gene. Among its related pathways are Gene Expression and tRNA processing. GO annotations related to this gene include RNA binding and tRNA-specific adenosine deaminase activity. An important paralog of this gene is ADARB1.

UniProtKB/Swiss-Prot for ADAT1 Gene

  • Specifically deaminates adenosine-37 to inosine in tRNA-Ala.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAT1 Gene

Genomics for ADAT1 Gene

Regulatory Elements for ADAT1 Gene

Enhancers for ADAT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G075646 1.4 ENCODE dbSUPER 52.1 -25.9 -25886 6.0 HDGF PKNOX1 FOXA2 MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ADAT1 TMEM231 CHST5 KARS GC16P075674
GH16G075560 1.3 Ensembl ENCODE 50.1 +63.3 63255 1.6 FOXA2 ATF1 PKNOX1 ARNT CREB3L1 ZNF766 GATA2 ELK1 FOS SP5 ADAT1 TMEM231 ENSG00000276408 GABARAPL2
GH16G075549 1.3 Ensembl ENCODE dbSUPER 46.1 +72.8 72774 1.4 ELF3 CTCF KLF1 SALL2 ZIC2 RAD21 RELA ZFHX2 EED ZNF143 ADAT1 TMEM231 TERF2IP ZFP1 ENSG00000260092
GH16G075516 1.4 ENCODE dbSUPER 42 +106.3 106311 2.0 HDGF PKNOX1 CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ADAT1 TMEM231 TERF2IP CHST6 GABARAPL2 ZFP1 GLG1 LOC100420067 CHST5
GH16G075531 1.1 dbSUPER 43.6 +90.6 90626 2.7 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 FEZF1 ZBTB7B YY1 ZNF143 ADAT1 CHST5 LOC100420067
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ADAT1 on UCSC Golden Path with GeneCards custom track

Promoters for ADAT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000088032 123 1201 PKNOX1 MLX CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for ADAT1 Gene

Chromosome:
16
Start:
75,596,981 bp from pter
End:
75,623,323 bp from pter
Size:
26,343 bases
Orientation:
Minus strand

Genomic View for ADAT1 Gene

Genes around ADAT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAT1 Gene

Proteins for ADAT1 Gene

  • Protein details for ADAT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BUB4-ADAT1_HUMAN
    Recommended name:
    tRNA-specific adenosine deaminase 1
    Protein Accession:
    Q9BUB4
    Secondary Accessions:
    • Q9NVB7
    • Q9UNG3

    Protein attributes for ADAT1 Gene

    Size:
    502 amino acids
    Molecular mass:
    55392 Da
    Cofactor:
    Name=1D-myo-inositol hexakisphosphate; Xref=ChEBI:CHEBI:58130;
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ADAT1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ADAT1 Gene

Selected DME Specific Peptides for ADAT1 Gene

Q9BUB4:
  • MGTGTKCIGQ
  • PLDVTANG
  • VYRTGAK
  • KPGRGDRT
  • LNDSHAE
  • SHTPCGDASIIP
  • PIYLSAVV

Post-translational modifications for ADAT1 Gene

  • Ubiquitination at Lys365
  • Modification sites at PhosphoSitePlus

Domains & Families for ADAT1 Gene

Gene Families for ADAT1 Gene

Protein Domains for ADAT1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ADAT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BUB4

UniProtKB/Swiss-Prot:

ADAT1_HUMAN :
  • Belongs to the ADAT1 family.
Family:
  • Belongs to the ADAT1 family.
genes like me logo Genes that share domains with ADAT1: view

Function for ADAT1 Gene

Molecular function for ADAT1 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
Adenine(37) in tRNA(Ala) + H(2)O = hypoxanthine(37) in tRNA(Ala) + NH(3).
UniProtKB/Swiss-Prot Function:
Specifically deaminates adenosine-37 to inosine in tRNA-Ala.

Enzyme Numbers (IUBMB) for ADAT1 Gene

Gene Ontology (GO) - Molecular Function for ADAT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IMP 10430867
GO:0004000 adenosine deaminase activity IEA --
GO:0008251 tRNA-specific adenosine deaminase activity IMP 10430867
GO:0016787 hydrolase activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ADAT1: view
genes like me logo Genes that share phenotypes with ADAT1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for ADAT1

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ADAT1 Gene

Localization for ADAT1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ADAT1 gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 2
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for ADAT1 Gene

Pathways & Interactions for ADAT1 Gene

genes like me logo Genes that share pathways with ADAT1: view

Pathways by source for ADAT1 Gene

Interacting Proteins for ADAT1 Gene

Gene Ontology (GO) - Biological Process for ADAT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
GO:0008033 tRNA processing IMP 10430867
genes like me logo Genes that share ontologies with ADAT1: view

No data available for SIGNOR curated interactions for ADAT1 Gene

Drugs & Compounds for ADAT1 Gene

(3) Drugs for ADAT1 Gene - From: ApexBio and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Cladribine Approved, Investigational Pharma Apoptosis inducer in CLL cells 73
Water Approved Pharma 0
Inosine Investigational Pharma 0

(1) Additional Compounds for ADAT1 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Ammonia
  • Ammonia anhydrous
  • Ammonia inhalant
  • Ammonia solution strong [usan]
  • Ammonia water
  • Ammoniak
7664-41-7

(1) ApexBio Compounds for ADAT1 Gene

Compound Action Cas Number
Cladribine Apoptosis inducer in CLL cells 4291-63-8
genes like me logo Genes that share compounds with ADAT1: view

Drug Products

Transcripts for ADAT1 Gene

Unigene Clusters for ADAT1 Gene

Adenosine deaminase, tRNA-specific 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADAT1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b
SP1: - - -
SP2: -
SP3: - - -
SP4:
SP5:

Relevant External Links for ADAT1 Gene

GeneLoc Exon Structure for
ADAT1
ECgene alternative splicing isoforms for
ADAT1

Expression for ADAT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADAT1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for ADAT1 Gene

This gene is overexpressed in Blymphocyte (41.7) and CD8 Tcells (27.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ADAT1 Gene



Protein tissue co-expression partners for ADAT1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ADAT1 Gene:

ADAT1

SOURCE GeneReport for Unigene cluster for ADAT1 Gene:

Hs.729312

mRNA Expression by UniProt/SwissProt for ADAT1 Gene:

Q9BUB4-ADAT1_HUMAN
Tissue specificity: Ubiquitously expressed.

Evidence on tissue expression from TISSUES for ADAT1 Gene

  • Nervous system(4.6)
genes like me logo Genes that share expression patterns with ADAT1: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADAT1 Gene

Orthologs for ADAT1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ADAT1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ADAT1 34 35
  • 98.94 (n)
cow
(Bos Taurus)
Mammalia ADAT1 34 35
  • 85.83 (n)
dog
(Canis familiaris)
Mammalia ADAT1 34 35
  • 85.65 (n)
mouse
(Mus musculus)
Mammalia Adat1 34 16 35
  • 81.89 (n)
rat
(Rattus norvegicus)
Mammalia Adat1 34
  • 81.65 (n)
oppossum
(Monodelphis domestica)
Mammalia ADAT1 35
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ADAT1 35
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves ADAT1 34 35
  • 63.99 (n)
lizard
(Anolis carolinensis)
Reptilia ADAT1 35
  • 48 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia adat1 34
  • 60.36 (n)
Str.18961 34
zebrafish
(Danio rerio)
Actinopterygii adat1 34 35
  • 55.77 (n)
fruit fly
(Drosophila melanogaster)
Insecta adat 34 35
  • 50.2 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009185 34
  • 45.41 (n)
worm
(Caenorhabditis elegans)
Secernentea adr-2 35
  • 18 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G01760 34
  • 44.15 (n)
rice
(Oryza sativa)
Liliopsida Os04g0683500 34
  • 52.01 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 33 (a)
OneToOne
Species where no ortholog for ADAT1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ADAT1 Gene

ENSEMBL:
Gene Tree for ADAT1 (if available)
TreeFam:
Gene Tree for ADAT1 (if available)

Paralogs for ADAT1 Gene

Paralogs for ADAT1 Gene

(1) SIMAP similar genes for ADAT1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with ADAT1: view

Variants for ADAT1 Gene

Sequence variations from dbSNP and Humsavar for ADAT1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs193920811 Uncertain significance 75,612,612(-) TGGCC(C/G/T)AATCT reference, missense
rs1000019493 -- 75,603,580(+) CCACT(C/T)GGACG intron-variant
rs1000052965 -- 75,598,249(+) TTTTT(C/G)TATTT utr-variant-3-prime
rs1000085113 -- 75,598,419(+) TACTT(C/T)GTTAA utr-variant-3-prime
rs1000112630 -- 75,613,488(+) GTAGA(C/G)ACGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ADAT1 Gene

Variant ID Type Subtype PubMed ID
esv3308244 CNV mobile element insertion 20981092
esv3442847 CNV insertion 20981092
esv3582324 CNV loss 25503493
esv3639101 CNV loss 21293372
nsv1065543 CNV loss 25217958

Variation tolerance for ADAT1 Gene

Residual Variation Intolerance Score: 64.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.70; 73.09% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ADAT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ADAT1 Gene

Disorders for ADAT1 Gene

Relevant External Links for ADAT1

Genetic Association Database (GAD)
ADAT1
Human Genome Epidemiology (HuGE) Navigator
ADAT1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADAT1

No disorders were found for ADAT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAT1 Gene

Publications for ADAT1 Gene

  1. Identification and characterization of a human tRNA-specific adenosine deaminase related to the ADAR family of pre-mRNA editing enzymes. (PMID: 10430867) Maas S. … Rich A. (Proc. Natl. Acad. Sci. U.S.A. 1999) 2 3 4 22 64
  2. Fine mapping and association studies of a high-density lipoprotein cholesterol linkage region on chromosome 16 in French-Canadian subjects. (PMID: 19844255) Dastani Z. … Genest J. (Eur. J. Hum. Genet. 2010) 3 46 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. (PMID: 25086665) Wolpin B.M. … Amundadottir L.T. (Nat. Genet. 2014) 3 64
  5. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H. … Mohammed S. (J. Proteome Res. 2013) 4 64

Products for ADAT1 Gene

Sources for ADAT1 Gene

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