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Aliases for ADAMTSL4-AS1 Gene

Subcategory (RNA class) for ADAMTSL4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADAMTSL4-AS1 Gene

  • ADAMTSL4 Antisense RNA 1 2 3 4
  • C1orf138 3 4
  • Chromosome 1 Open Reading Frame 138 2
  • ADAMTSL4 Antisense Gene Protein 1 4

External Ids for ADAMTSL4-AS1 Gene

Previous Symbols for ADAMTSL4-AS1 Gene

  • C1orf138

Summaries for ADAMTSL4-AS1 Gene

GeneCards Summary for ADAMTSL4-AS1 Gene

ADAMTSL4-AS1 (ADAMTSL4 Antisense RNA 1) is a RNA Gene, and belongs to non-coding RNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAMTSL4-AS1 Gene

Genomics for ADAMTSL4-AS1 Gene

Genomic Location for ADAMTSL4-AS1 Gene

Start:
150,560,202 bp from pter
End:
150,574,552 bp from pter
Size:
14,351 bases
Orientation:
Minus strand

Genomic View for ADAMTSL4-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ADAMTSL4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTSL4-AS1 Gene

No data available for Regulatory Elements for ADAMTSL4-AS1 Gene

Proteins for ADAMTSL4-AS1 Gene

  • Protein details for ADAMTSL4-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T5F5-A4AS1_HUMAN
    Recommended name:
    Uncharacterized protein ADAMTSL4-AS1
    Protein Accession:
    Q5T5F5
    Secondary Accessions:
    • Q6ZS69

    Protein attributes for ADAMTSL4-AS1 Gene

    Size:
    129 amino acids
    Molecular mass:
    14090 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ADAMTSL4-AS1 Gene

Proteomics data for ADAMTSL4-AS1 Gene at MOPED

Post-translational modifications for ADAMTSL4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTSL4-AS1 Gene

Domains for ADAMTSL4-AS1 Gene

Gene Families for ADAMTSL4-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for ADAMTSL4-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with ADAMTSL4-AS1: view

No data available for UniProtKB/Swiss-Prot for ADAMTSL4-AS1 Gene

Function for ADAMTSL4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ADAMTSL4-AS1 Gene

Localization for ADAMTSL4-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for ADAMTSL4-AS1 Gene

Pathways for ADAMTSL4-AS1 Gene

SuperPathways for ADAMTSL4-AS1 Gene

No Data Available

Interacting Proteins for ADAMTSL4-AS1 Gene

Gene Ontology (GO) - Biological Process for ADAMTSL4-AS1 Gene

None

No data available for Pathways by source for ADAMTSL4-AS1 Gene

Transcripts for ADAMTSL4-AS1 Gene

mRNA/cDNA for ADAMTSL4-AS1 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTSL4-AS1 Gene

No ASD Table

Relevant External Links for ADAMTSL4-AS1 Gene

GeneLoc Exon Structure for
ADAMTSL4-AS1
ECgene alternative splicing isoforms for
ADAMTSL4-AS1

Expression for ADAMTSL4-AS1 Gene

mRNA expression in normal human tissues for ADAMTSL4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTSL4-AS1 Gene

This gene is overexpressed in Whole Blood (19.6).
genes like me logo Genes that share expressions with ADAMTSL4-AS1: view

Orthologs for ADAMTSL4-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ADAMTSL4-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ADAMTSL4-AS1 37
  • 97 (a)
OneToOne
Species with no ortholog for ADAMTSL4-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ADAMTSL4-AS1 Gene

ENSEMBL:
Gene Tree for ADAMTSL4-AS1 (if available)
TreeFam:
Gene Tree for ADAMTSL4-AS1 (if available)

Paralogs for ADAMTSL4-AS1 Gene

No data available for Paralogs for ADAMTSL4-AS1 Gene

Variants for ADAMTSL4-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADAMTSL4-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs932054 -- 150,567,391(-) GAGGA(C/G)TGCTG intron-variant
rs2669071 -- 150,573,664(-) TTGAT(C/T)TTGAG nc-transcript-variant
rs3839013 -- 150,572,918(+) TTTGT(-/A)AAAAA intron-variant
rs4971041 -- 150,564,881(+) TTCTG(C/T)TCTGC intron-variant
rs6655975 -- 150,569,652(+) CGAGC(A/G)GAGAA intron-variant

Relevant External Links for ADAMTSL4-AS1 Gene

HapMap Linkage Disequilibrium report
ADAMTSL4-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for ADAMTSL4-AS1 Gene

Disorders for ADAMTSL4-AS1 Gene

No disorders were found for ADAMTSL4-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for ADAMTSL4-AS1 Gene

Publications for ADAMTSL4-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for ADAMTSL4-AS1 Gene

Sources for ADAMTSL4-AS1 Gene

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