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Aliases for ADAMTSL4-AS1 Gene

Subcategory (RNA class) for ADAMTSL4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADAMTSL4-AS1 Gene

  • ADAMTSL4 Antisense RNA 1 2 3 4 5
  • C1orf138 3 4
  • Chromosome 1 Open Reading Frame 138 2
  • ADAMTSL4 Antisense Gene Protein 1 4

External Ids for ADAMTSL4-AS1 Gene

Previous HGNC Symbols for ADAMTSL4-AS1 Gene

  • C1orf138

Previous GeneCards Identifiers for ADAMTSL4-AS1 Gene

  • GC01M150533

Summaries for ADAMTSL4-AS1 Gene

GeneCards Summary for ADAMTSL4-AS1 Gene

ADAMTSL4-AS1 (ADAMTSL4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAMTSL4-AS1 Gene

Genomics for ADAMTSL4-AS1 Gene

Regulatory Elements for ADAMTSL4-AS1 Gene

Enhancers for ADAMTSL4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F150512 0.2 ENCODE 12.2 +61.1 61063 1.7 HDGF CTCF BCOR KLF1 JUN TSC22D4 KLF17 RAD21 FOSL1 POLR2A MRPS21 ADAMTSL4 LOC100289061 ADAMTSL4-AS1 RPRD2 CA14 GOLPH3L TARS2 ENSG00000261168 GC01P150516
GH01F150514 0.4 ENCODE 12.2 +58.7 58738 2.7 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SETDB1 ADAMTSL4 GOLPH3L GABPB2 MRPS21 CYCSP51 LOC100289061 ADAMTSL4-AS1 HIST2H2AB PRPF3
GH01F150507 0.6 ENCODE 11.6 +66.1 66083 2.3 SIN3A ARID4B GLIS2 FOS ZNF263 SP5 JUNB PPARG NFIL3 SMARCA4 MRPS21 ADAMTSL4 VPS72 LOC100289061 ADAMTSL4-AS1 LYSMD1 GABPB2 CA14 VPS45 ECM1
GH01F150472 0.7 ENCODE 11.5 +100.9 100924 1.6 ELF3 ATF1 ARID4B ZNF48 ZSCAN9 RAD21 DNMT3B RARA YY1 CREM ADAMTSL4 ECM1 LOC100289061 ADAMTSL4-AS1 APH1A C1orf54 HORMAD1 PRUNE1 RNU6-884P MIR6878
GH01F150464 0.5 ENCODE 11.5 +110.0 110023 0.2 CTCF ARID4B SIN3A RAD21 ZFHX2 EGR1 ZNF143 SMC3 KLF13 EGR2 TARS2 MIR6878 ECM1 ADAMTSL4 LOC100289061 ADAMTSL4-AS1 CA14 CIART CTSK UBE2D3P3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ADAMTSL4-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ADAMTSL4-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001750058 52 201 CREB3 BCOR TFAP4 POLR2A SMAD5 ZEB2 SUPT5H

Genomic Location for ADAMTSL4-AS1 Gene

Chromosome:
1
Start:
150,560,202 bp from pter
End:
150,574,552 bp from pter
Size:
14,351 bases
Orientation:
Minus strand

Genomic View for ADAMTSL4-AS1 Gene

Genes around ADAMTSL4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAMTSL4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTSL4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTSL4-AS1 Gene

Proteins for ADAMTSL4-AS1 Gene

  • Protein details for ADAMTSL4-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T5F5-A4AS1_HUMAN
    Recommended name:
    Uncharacterized protein ADAMTSL4-AS1
    Protein Accession:
    Q5T5F5
    Secondary Accessions:
    • Q6ZS69

    Protein attributes for ADAMTSL4-AS1 Gene

    Size:
    129 amino acids
    Molecular mass:
    14090 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ADAMTSL4-AS1 Gene

Post-translational modifications for ADAMTSL4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTSL4-AS1 Gene

Domains & Families for ADAMTSL4-AS1 Gene

Protein Domains for ADAMTSL4-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ADAMTSL4-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADAMTSL4-AS1 Gene

Function for ADAMTSL4-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTSL4-AS1 Gene

Localization for ADAMTSL4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ADAMTSL4-AS1 Gene

Pathways & Interactions for ADAMTSL4-AS1 Gene

SuperPathways for ADAMTSL4-AS1 Gene

No Data Available

Interacting Proteins for ADAMTSL4-AS1 Gene

Gene Ontology (GO) - Biological Process for ADAMTSL4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADAMTSL4-AS1 Gene

Transcripts for ADAMTSL4-AS1 Gene

mRNA/cDNA for ADAMTSL4-AS1 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTSL4-AS1 Gene

No ASD Table

Relevant External Links for ADAMTSL4-AS1 Gene

GeneLoc Exon Structure for
ADAMTSL4-AS1
ECgene alternative splicing isoforms for
ADAMTSL4-AS1

Expression for ADAMTSL4-AS1 Gene

mRNA expression in normal human tissues for ADAMTSL4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTSL4-AS1 Gene

This gene is overexpressed in Whole Blood (x19.6).
genes like me logo Genes that share expression patterns with ADAMTSL4-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ADAMTSL4-AS1 Gene

Orthologs for ADAMTSL4-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ADAMTSL4-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ADAMTSL4-AS1 35
  • 97 (a)
OneToOne
Species where no ortholog for ADAMTSL4-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ADAMTSL4-AS1 Gene

ENSEMBL:
Gene Tree for ADAMTSL4-AS1 (if available)
TreeFam:
Gene Tree for ADAMTSL4-AS1 (if available)

Paralogs for ADAMTSL4-AS1 Gene

No data available for Paralogs for ADAMTSL4-AS1 Gene

Variants for ADAMTSL4-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADAMTSL4-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10206 -- 150,574,704(-) GAACA(C/T)CTTGG upstream-variant-2KB, utr-variant-3-prime
rs1051373 -- 150,575,832(-) CTCCC(A/T)CTACA upstream-variant-2KB, utr-variant-3-prime
rs111358816 -- 150,563,704(+) AACTC(-/AAG)AAGAG intron-variant
rs111660862 -- 150,560,949(+) CTTCC(A/T)TGTCG nc-transcript-variant, downstream-variant-500B
rs11204665 -- 150,563,873(+) AGAGC(A/G)GAGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ADAMTSL4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3587506 CNV loss 21293372
nsv1006838 CNV gain 25217958
nsv527379 CNV loss 19592680

Variation tolerance for ADAMTSL4-AS1 Gene

Gene Damage Index Score: 1.41; 27.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ADAMTSL4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTSL4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ADAMTSL4-AS1 Gene

Disorders for ADAMTSL4-AS1 Gene

Relevant External Links for ADAMTSL4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADAMTSL4-AS1

No disorders were found for ADAMTSL4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAMTSL4-AS1 Gene

Publications for ADAMTSL4-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ADAMTSL4-AS1 Gene

Sources for ADAMTSL4-AS1 Gene

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