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Aliases for ADAMTS9-AS2 Gene

Subcategory (RNA class) for ADAMTS9-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADAMTS9-AS2 Gene

  • ADAMTS9 Antisense RNA 2 2 3 5
  • ADAMTS9 Antisense RNA 2 (Non-Protein Coding) 2 3
  • CTD-2230D16.1 3

External Ids for ADAMTS9-AS2 Gene

Summaries for ADAMTS9-AS2 Gene

GeneCards Summary for ADAMTS9-AS2 Gene

ADAMTS9-AS2 (ADAMTS9 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAMTS9-AS2 Gene

Genomics for ADAMTS9-AS2 Gene

Regulatory Elements for ADAMTS9-AS2 Gene

Enhancers for ADAMTS9-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F064021 0.4 ENCODE 16.4 -661.9 -661887 2.3 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ADAMTS9-AS2 ADAMTS9 ENSG00000272181 PSMD6
GH03F065005 0.2 ENCODE 8.2 +321.2 321237 1.9 JUND NR2F2 ADAMTS9-AS2 GC03P064999 GC03M065064
GH03F064987 0.2 ENCODE 8.1 +303.5 303492 1.0 JUND JUN MYC ADAMTS9-AS2 LOC105377124 ADAMTS9
GH03F065027 1.1 FANTOM5 ENCODE 6.2 +342.9 342905 0.6 TBP PKNOX1 SMAD5 POLR2A GTF2B ADAMTS9-AS2 GC03P064999 GC03M065064
GH03F064995 0.8 Ensembl ENCODE 4.6 +311.2 311202 2.1 FEZF1 RARA ZNF7 SCRT2 PRDM10 ZNF600 TCF7L2 ZBTB20 MIXL1 SOX5 ADAMTS9-AS2 GC03P064999 LOC105377124
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ADAMTS9-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for ADAMTS9-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001366154 1931 4799 PKNOX1 SIN3A KLF17 FEZF1 GLI4 RAD21 ZNF121 GLIS2 ZNF366 FOS

Genomic Location for ADAMTS9-AS2 Gene

Chromosome:
3
Start:
64,684,870 bp from pter
End:
65,011,468 bp from pter
Size:
326,599 bases
Orientation:
Plus strand

Genomic View for ADAMTS9-AS2 Gene

Genes around ADAMTS9-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAMTS9-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS9-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS9-AS2 Gene

Proteins for ADAMTS9-AS2 Gene

Post-translational modifications for ADAMTS9-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS9-AS2 Gene

Domains & Families for ADAMTS9-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADAMTS9-AS2 Gene

Function for ADAMTS9-AS2 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS9-AS2 Gene

Localization for ADAMTS9-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ADAMTS9-AS2 Gene

Pathways & Interactions for ADAMTS9-AS2 Gene

SuperPathways for ADAMTS9-AS2 Gene

No Data Available

Interacting Proteins for ADAMTS9-AS2 Gene

Gene Ontology (GO) - Biological Process for ADAMTS9-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADAMTS9-AS2 Gene

Transcripts for ADAMTS9-AS2 Gene

mRNA/cDNA for ADAMTS9-AS2 Gene

(6) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ADAMTS9-AS2 Gene

ADAMTS9 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS9-AS2 Gene

No ASD Table

Relevant External Links for ADAMTS9-AS2 Gene

GeneLoc Exon Structure for
ADAMTS9-AS2
ECgene alternative splicing isoforms for
ADAMTS9-AS2

Expression for ADAMTS9-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADAMTS9-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTS9-AS2 Gene

This gene is overexpressed in Ovary (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of ADAMTS9-AS2 Gene:

ADAMTS9-AS2

SOURCE GeneReport for Unigene cluster for ADAMTS9-AS2 Gene:

Hs.660881
genes like me logo Genes that share expression patterns with ADAMTS9-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ADAMTS9-AS2 Gene

Orthologs for ADAMTS9-AS2 Gene

Evolution for ADAMTS9-AS2 Gene

ENSEMBL:
Gene Tree for ADAMTS9-AS2 (if available)
TreeFam:
Gene Tree for ADAMTS9-AS2 (if available)

No data available for Orthologs for ADAMTS9-AS2 Gene

Paralogs for ADAMTS9-AS2 Gene

No data available for Paralogs for ADAMTS9-AS2 Gene

Variants for ADAMTS9-AS2 Gene

Sequence variations from dbSNP and Humsavar for ADAMTS9-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs6795735 untested 64,719,689(+) CTTCA(C/T)GTCAG intron-variant
rs1014044 -- 64,996,868(-) AGCAT(C/T)GAATG intron-variant
rs1014045 -- 64,996,733(-) AGCCA(C/G)TAGGT intron-variant
rs10212270 -- 64,847,194(+) tgcaa(C/T)gaatg intron-variant
rs1030183 -- 64,758,757(+) TTTCC(C/G)CTCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS9-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2657718 CNV deletion 23128226
esv2759154 CNV loss 17122850
esv3561990 CNV deletion 23714750
esv3568818 CNV loss 25503493
esv3596410 CNV loss 21293372
nsv1148007 CNV insertion 26484159
nsv3853 CNV insertion 18451855
nsv435772 CNV deletion 17901297
nsv509829 OTHER sequence alteration 20534489
nsv523418 CNV loss 19592680
nsv834718 CNV gain 17160897

Relevant External Links for ADAMTS9-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTS9-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADAMTS9-AS2 Gene

Disorders for ADAMTS9-AS2 Gene

Relevant External Links for ADAMTS9-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADAMTS9-AS2

No disorders were found for ADAMTS9-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAMTS9-AS2 Gene

Publications for ADAMTS9-AS2 Gene

  1. A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells. (PMID: 24833086) Yao J. … Zhu W. (Tumour Biol. 2014) 2 3 64
  2. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein J.I. … Sullivan P.F. (Nat Commun 2014) 3 64
  3. White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder. (PMID: 23218918) Sprooten E. … McIntosh A.M. (Psychiatry Res 2013) 3 64
  4. Seven new loci associated with age-related macular degeneration. (PMID: 23455636) Fritsche L.G. … Abecasis G.R. (Nat. Genet. 2013) 3 64
  5. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall J.C. … Heid I.M. (PLoS Genet. 2013) 3 64

Products for ADAMTS9-AS2 Gene

Sources for ADAMTS9-AS2 Gene

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