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Aliases for ADAMTS9-AS2 Gene

Subcategory (RNA class) for ADAMTS9-AS2 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for ADAMTS9-AS2 Gene

  • ADAMTS9 Antisense RNA 2 2 3
  • ADAMTS9 Antisense RNA 2 (Non-Protein Coding) 2 3
  • CTD-2230D16.1 3

External Ids for ADAMTS9-AS2 Gene

Summaries for ADAMTS9-AS2 Gene

GeneCards Summary for ADAMTS9-AS2 Gene

ADAMTS9-AS2 (ADAMTS9 Antisense RNA 2) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAMTS9-AS2 Gene

Genomics for ADAMTS9-AS2 Gene

Genomic Location for ADAMTS9-AS2 Gene

Start:
64,684,870 bp from pter
End:
65,011,468 bp from pter
Size:
326,599 bases
Orientation:
Plus strand

Genomic View for ADAMTS9-AS2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ADAMTS9-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS9-AS2 Gene

No data available for Regulatory Elements for ADAMTS9-AS2 Gene

Proteins for ADAMTS9-AS2 Gene

Post-translational modifications for ADAMTS9-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS9-AS2 Gene

Domains for ADAMTS9-AS2 Gene

Gene Families for ADAMTS9-AS2 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ADAMTS9-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADAMTS9-AS2 Gene

Function for ADAMTS9-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ADAMTS9-AS2 Gene

Localization for ADAMTS9-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ADAMTS9-AS2 Gene

Pathways for ADAMTS9-AS2 Gene

SuperPathways for ADAMTS9-AS2 Gene

No Data Available

Interacting Proteins for ADAMTS9-AS2 Gene

Gene Ontology (GO) - Biological Process for ADAMTS9-AS2 Gene

None

No data available for Pathways by source for ADAMTS9-AS2 Gene

Transcripts for ADAMTS9-AS2 Gene

mRNA/cDNA for ADAMTS9-AS2 Gene

(6) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ADAMTS9-AS2 Gene

ADAMTS9 antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS9-AS2 Gene

No ASD Table

Relevant External Links for ADAMTS9-AS2 Gene

GeneLoc Exon Structure for
ADAMTS9-AS2
ECgene alternative splicing isoforms for
ADAMTS9-AS2

Expression for ADAMTS9-AS2 Gene

mRNA expression in normal human tissues for ADAMTS9-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ADAMTS9-AS2 Gene

This gene is overexpressed in Ovary (4.5).

SOURCE GeneReport for Unigene cluster for ADAMTS9-AS2 Gene Hs.660881

genes like me logo Genes that share expressions with ADAMTS9-AS2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for ADAMTS9-AS2 Gene

Orthologs for ADAMTS9-AS2 Gene

Evolution for ADAMTS9-AS2 Gene

ENSEMBL:
Gene Tree for ADAMTS9-AS2 (if available)
TreeFam:
Gene Tree for ADAMTS9-AS2 (if available)

No data available for Orthologs for ADAMTS9-AS2 Gene

Paralogs for ADAMTS9-AS2 Gene

No data available for Paralogs for ADAMTS9-AS2 Gene

Variants for ADAMTS9-AS2 Gene

Sequence variations from dbSNP and Humsavar for ADAMTS9-AS2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs167622 -- 64,778,077(+) aataa(A/C)ctgtt intron-variant
rs178540 -- 64,801,528(+) CTTTT(C/T)TCCTT intron-variant
rs191169 -- 64,823,112(+) aaggt(A/G)gccat intron-variant
rs191170 -- 64,825,847(-) CCTCT(A/T)TGAGT intron-variant
rs191171 -- 64,833,675(+) CTTAG(A/G)TAGCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS9-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv834718 CNV Gain 17160897
dgv5152n71 CNV Loss 21882294
nsv523418 CNV Loss 19592680
nsv509829 CNV Loss 20534489
esv2657718 CNV Deletion 23128226
nsv435772 CNV Deletion 17901297
nsv3853 CNV Insertion 18451855
dgv1463e1 CNV Complex 17122850
nsv876890 CNV Loss 21882294

Relevant External Links for ADAMTS9-AS2 Gene

HapMap Linkage Disequilibrium report
ADAMTS9-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ADAMTS9-AS2 Gene

Disorders for ADAMTS9-AS2 Gene

No disorders were found for ADAMTS9-AS2 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for ADAMTS9-AS2 Gene

Publications for ADAMTS9-AS2 Gene

  1. A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells. (PMID: 24833086) Yao J. … Zhu W. (Tumour Biol. 2014) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes. (PMID: 18372903) Zeggini E. … Altshuler D. (Nat. Genet. 2008) 3
  4. Genome-wide association analysis of age-at-onset in Alzheimer's disease. (PMID: 22005931) Kamboh M.I. … Lopez O.L. (Mol. Psychiatry 2012) 3
  5. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PMID: 22589738) Fox C.S. … Borecki I.B. (PLoS Genet. 2012) 3

Products for ADAMTS9-AS2 Gene

Sources for ADAMTS9-AS2 Gene

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