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ADAMTS8 Gene

protein-coding   GIFtS: 54

GC11M129780
ADAM metallopeptidase with thrombospondin type 1 motif, 8
(Previous names: a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 8 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
ADAM-TS8 1, 2, 3
ADAMTS-8 3
EC 3.4.24.- 3
FLJ41712 1, 2
METH-2 3
METH-8 3
METH2 1, 2, 3, 5
Descriptions
ADAM metallopeptidase with thrombospondin type 1 motif, 8 2
ADAM-TS 8 3
a disintegrin-like and metalloprotease (reprolysin type)
with thrombospondin type 1 motif, 8 1, 2
External Ids
HGNC: 2241
Entrez Gene: 110952
UniProtKB: Q9UP793
Ensembl: ENSG000001349177
Search outside databases for aliases for ADAMTS8 gene

Previous GC identifers: GC11M132275 GC11M131787 GC11M130308 GC11M129812

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for ADAMTS8:
This gene encodes a member of the ADAMTS (a disintegrin and metalloproteinase with thrombospondin
motifs) protein family. Members of the family share several distinct protein modules, including a
propeptide region, a metalloproteinase domain, a disintegrin-like domain, and a thrombospondin
type 1 (TS) motif. Individual members of this family differ in the number of C-terminal TS motifs,
and some have unique C-terminal domains. The enzyme encoded by this gene contains two C-terminal
TS motifs, and disrupts angiogenesis in vivo. A number of disorders have been mapped in the
vicinity of this gene, most notably lung neoplasms. [provided by RefSeq]

UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79
Function: Has anti-angiogenic properties

Gene Wiki entry for ADAMTS8

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ADAMTS8 gene  

Entrez Gene cytogenetic band: 11q25   Ensembl cytogenetic band:  11q24.3   HGNC cytogenetic band: 11q25

ADAMTS8 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M129780:     (about GC identifiers)

Start:
129,780,028 bp from pter
End:
129,803,749 bp from pter
Size:
23,722 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000011.8  NT_033899.7  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79 (See protein sequence)
Recommended Name: A disintegrin and metalloproteinase with thrombospondin motifs 8 precursor  
Size: 890 amino acids; 96672 Da
Cofactor: Binds 1 zinc ion per subunit (By similarity)
Subcellular location: Secreted, extracellular space, extracellular matrix (By similarity)
Secondary accessions: Q9NZS0

Post-translational modifications:

  • The precursor is cleaved by a furin endopeptidase (By similarity)1


  • REFSEQ proteins: NP_008968.4  

    ENSEMBL proteins: 
    ENSP00000257359 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (ADAMTS8)
    Human Recombinant Proteins from Abnova (ADAMTS8)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region IEA--
    GO:0005578 proteinaceous extracellular matrix IEA--
    About this table

    Antibodies for ADAMTS8: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for ADAMTS8
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (ADAMTS8), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (ADAMTS8)
    Novus Biologicals Antibody for ADAMTS8

    Assays for ADAMTS8: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    5/8 InterPro domains/families (see all 8 ):
     IPR000884 Thrombospondin_1_rpt
     IPR018358 Disintegrin_CS
     IPR010294 ADAM_spacer1
     IPR001590 Peptidase_M12B
     IPR013277 Pept_M12B_ADAM-TS8


       GeneDecks  ADAMTS8 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9UP79

    ProtoNet protein and cluster: Q9UP79

    5 Blocks protein families:
    IPB000884 Thrombospondin
    IPB001762 Disintegrin
    IPB002870 Metalloendopeptidase M12B
    IPB008085 Thrombospondin type 1 repeat signature
    IPB010294 ADAM-TS Spacer 1


    UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79
    Domain: The spacer domain and the TSP type-1 domains are important for a tight interaction with the
    extracellular matrix
    Similarity: Contains 1 disintegrin domain
    Similarity: Contains 1 peptidase M12B domain
    Similarity: Contains 2 TSP type-1 domains

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (ADAMTS8)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (ADAMTS8)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007037

                  Applied Biosystems Silencer® siRNAs for ADAMTS8

                  Sigma-Aldrich siRNA and siRNA Panels for ADAMTS8  
                         Sigma-Aldrich shRNA Panels and shRNA for ADAMTS8  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_007037
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_007037
                                     untagged cDNA clone in CMV expression vector: NM_007037 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_007037

    UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79
    Function: Has anti-angiogenic properties
    Enzyme Number (IUBMB): EC 3.4.24.- 

    5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004222 metalloendopeptidase activity IEA--
    GO:0005178 integrin binding TAS10438512
    GO:0008201 heparin binding IEA--
    GO:0008233 peptidase activity IEA--
    GO:0008270 zinc ion binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


      --

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006508 proteolysis IEA--
    GO:0008285 negative regulation of cell proliferation TAS10438512
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Enzo Life Sciences drugs & compounds for ADAMTS8
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for ADAMTS8

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (ADAMTS8)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (ADAMTS8)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007037

                  Sigma-Aldrich siRNA and siRNA Panels for ADAMTS8  
                         Sigma-Aldrich shRNA Panels and shRNA for ADAMTS8  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_007037  

    REFSEQ mRNAs for ADAMTS8 gene: 

    NM_007037.4   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_007037  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_007037
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_007037
                                     untagged cDNA clone in CMV expression vector: NM_007037 

    Additional cDNA sequence: 

    AB209717.1 AF060153.1 AF175283.1 AK123706.1 BC089435.1 BC113874.1 BC114624.1 

    8 DOTS entries:

    DT.120727753  DT.102826821  DT.91753837  DT.101980577  DT.106087  DT.120727736  DT.106086  DT.100845050 

    24/68 AceView cDNA sequences (see all 68 ):

    CO248849 CA440574 BM988619 AI811557 AA693573 BF221873 CO393893 AI138443 
    CO398765 CF125500 AA350802 AK123706 CF126031 BM726460 BQ013052 CO246413 
    AI969885 CO401291 AA917316 BM972024 CO246592 CF125909 AI378857 AI587074 

    highest scoring ESTs for ADAMTS8:

    AF060153 AI400905 AA350802 AA635657 AF175283 AI378857 AI674956 AI969885 AW137467 BF033017 

    Unigene Cluster for ADAMTS8:

    ADAM metallopeptidase with thrombospondin type 1 motif, 8
    Hs.271605  [show with all ESTs]
    Unigene Representative Sequence: AF060153


    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS8

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b ^ 9 ^ 10
    SP1:                                      -     -                       -               
    SP2:                          -     -     -     -     -     -     -     -     -         
    SP3:                                                                    -               
    SP4:                                                                                    

    About this scheme

    ECgene alternative splicing isoforms for ADAMTS8

    1 Ensembl transcript including schematic representation:
    ENST00000257359  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    ADAMTS8 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for ADAMTS8

    1 / 2 / 3

    8 probe-sets matching ADAMTS8 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    88879_at2, 3 U95-E 1 1.00 1.00 0.85 1.14 AI378857 0.60 1.00 0.82 1

    85346_at2, 3 U95-E 1 0.81 1.00 0.34 0.87 AI400905 0.80 1.00 0.91 1

    235649_at2, 3 U133-B 1 1.00 1.00 -- -- AW207389 0.40 1.00 0.76 1

    220676_at2, 3 U133-A 1 1.00 1.00 -- -- NM_007037 0.60 1.00 0.82 1

    220677_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_007037 0.60 1.00 0.82 1

    235649_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    220676_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    220677_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  ADAMTS8 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TTCTCAGGCT

    SOURCE GeneReport for Unigene cluster: Hs.271605

    UniProtKB/Swiss-Prot: ATS8_HUMAN, Q9UP79
    Tissue specificity: Highly expressed in adult and fetal lung, lower expression in brain, placenta,
    heart, stomach and fetal brain and kidney

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for ADAMTS8 gene from 5/6 species (see all 6 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    chimpanzee
    (Pan troglodytes)
    ADAMTS81   -- ADAM metallopeptidase with thrombospondin type 1 motif, more 99.06(n)
    98.87(a)
    466852  XM_522252.2  XP_522252.2 
    cow
    (Bos taurus)
    ADAMTS81   -- ADAM metallopeptidase with thrombospondin type 1 motif, more 82.9(n)
    76.9(a)
    512544  XM_590083.3  XP_590083.3 
    rat
    (Rattus norvegicus)
    Adamts81   -- ADAM metallopeptidase with thrombospondin type 1 motif, more 82.24(n)
    78.92(a)
    300475  XM_235977.4  XP_235977.4 
    mouse
    (Mus musculus)
    Adamts81, 5 9 (9.00 cM)5
    a disintegrin-like and metallopeptidase (reprolysin more1, 5 83.61(n)1
    81.55(a)1
    308061  NM_013906.21  NP_038934.21 
     AA8555325  AF1752825  (see all 8)
    chicken
    (Gallus gallus)
    ADAMTS81   -- ADAM metallopeptidase with thrombospondin type 1 motif, more 76.5(n)
    76.74(a)
    769222  XM_001232456.1  XP_001232457.1 
    About this table        Species with no ortholog for ADAMTS8

    ENSEMBL Gene Tree for ADAMTS8
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for ADAMTS8 gene
    ADAMTS42  ADAMTS12  ADAMTS52  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/158 NCBI SNPs in ADAMTS8 are shown (see all 158 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 56)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 11 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs21315351,2
    A,C,F,H129786698(+) CATCTA/GCCACG 1 A/V mis1 ese316Minor allele frequency- G:0.23EA NA EU WA 2784
    rs37588221,2
    C,F,H129805195(-) TTGTCC/TTTCCT 1 -- ng31 trp35Minor allele frequency- T:0.19EA EU WA 1502
    rs22423121,2
    C,F,H129780556(+) GGGCCG/ATGCTG 1 -- ut31 ese35Minor allele frequency- A:0.16EA EU WA 1170
    rs118213011,2
    C,F,H129804878(+) GGGGAT/CGTTGA 1 -- ng312Minor allele frequency- C:0.15EU WA 238
    rs22913481,2
    C,F,H129794327(+) TCAGGT/CTGATG 1 S/N mis110Minor allele frequency- C:0.08EA EU WA NA 2362
    rs112220851,2
    C,F,H129780959(+) GACTGT/CCAGGA 1 A/T mis1 ese39Minor allele frequency- C:0.07EU EA WA NA 908
    rs9030241,2
    A,F129803657(-) GGGCAA/GGGGCG 1 -- ut511Minor allele frequency- G:0.49MN 184
    rs354686291,2
    F129802958(+) GCTGAG/CCCAGG 1 G/A mis11Minor allele frequency- C:0.08NA 74
    rs79270481,2
    A129803158(+) TTGAAC/GTCGGG 1 E/D mis10--------
    rs122898351,2
    H129802745(+) CCTCAG/AACACA 1 F/S mis1 ese34Minor allele frequency- A:0.00EU EA WA 418
    About this table

    HapMap Linkage Disequilibrium images for ADAMTS8 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 605175

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/11 PubMed articles for ADAMTS8 gene (see all 11 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 11095 HGNC: 224 AceView: ADAMTS8 Ensembl:ENSG00000134917 euGenes: HUgn11095
    ECgene: ADAMTS8 H-InvDB: ADAMTS8
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for ADAMTS8 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for ADAMTS8:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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