ADAMTS5 Gene
protein-coding GIFtS : 59
GC21M027215
ADAM metallopeptidase with thrombospondin type 1 motif, 5 (Previous names: a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for ADAMTS5
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase , and/or 9 Nature :405,311-319 and CroW21)About This Section
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Aliases ADAM-TS5 3 ADAMTS-11 3 ADAMTS-5 3 ADAMTS11 1 , 2 , 3 , 5 ADMP-2 1 , 2 , 3 ADMP2 3 Aggrecanase-2 3 EC 3.4.24.- 3 FLJ36738 2 aggrecanase-2 2
Descriptions A disintegrin and metalloproteinase with thrombospondin motifs 11 3 ADAM metallopeptidase with thrombospondin type 1 motif, 5 2 ADAM-TS 11 3 ADAM-TS 5 3 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) 1 , 2 disintegrin-like and metalloprotease with thrombospondin type 1 motif, 5 9
Search outside databases for aliases for ADAMTS5 genePrevious GC identifers: GC21M024872 GC21M027200
Summaries for ADAMTS5 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ADAMTS5 : This gene encodes a member of the ADAMTS (a disintegrin and metalloproteinase with thrombospondinmotifs) protein family. Members of the family share several distinct protein modules, including apropeptide region, a metalloproteinase domain, a disintegrin-like domain, and a thrombospondintype 1 (TS) motif. Individual members of this family differ in the number of C-terminal TS motifs,and some have unique C-terminal domains. The enzyme encoded by this gene contains two C-terminalTS motifs and functions as aggrecanase to cleave aggrecan, a major proteoglycan of cartilage.[provided by RefSeq] UniProtKB/Swiss-Prot: ATS5_HUMAN, Q9UNA0 Function : Cleaves aggrecan, a cartilage proteoglycan, and may be involved in its turnover. May playan important role in the destruction of aggrecan in arthritic diseases. May play a role inproteolytic processing mostly during the peri-implantation period
Genomic Location for ADAMTS5
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences , Whole Chromsome Sequence According to
Nature (Cited Here with Permission) :405,311-319 and CroW21)About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 21q21.3 Ensembl cytogenetic band: 21q21.3 HGNC cytogenetic band: 21q21.3 Nature(405: 311-319) cytogenetic band: 21q21.3 ADAMTS5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
GC21M027215:
GeneLoc
Nature :405,311-319
Start:
27,212,112 bp from pter
13,871,628 bp from centromere
End:
27,260,703 bp from pter
13,916,697 bp from centromere
Size:
48,592 bases
45,070 bases
Orientation:
minus strand
minus strand
RefSeq DNA sequence: NC_000021.7 NT_011512.10 Proteins for ADAMTS5
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ATS5_HUMAN, Q9UNA0 (See
protein sequence )Recommended Name: A disintegrin and metalloproteinase with thrombospondin motifs 5 precursor Size : 930 amino acids; 101716 Da
Cofactor : Binds 1 zinc ion per subunit (By similarity)
Subcellular location : Secreted, extracellular space, extracellular matrix (By similarity)
PDB structure from and Proteopedia : 2RJQ (3D)
 3B8Z (3D)
 
Secondary accessions : Q52LV4 Q9UKP2
Post-translational modifications:
The precursor is cleaved by a furin endopeptidase (By similarity)1
REFSEQ proteins: NP_008969.2 ENSEMBL proteins: ENSP00000284987 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ADAMTS5: Assays for ADAMTS5:
Protein
Domains/ Families for ADAMTS5(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9UNA0 ProtoNet protein and cluster: Q9UNA0
5 Blocks protein families : IPB000884 Thrombospondin IPB001762 Disintegrin IPB002870 Metalloendopeptidase M12B IPB008085 Thrombospondin type 1 repeat signature IPB010294 ADAM-TS Spacer 1 UniProtKB/Swiss-Prot: ATS5_HUMAN, Q9UNA0 Domain : The spacer domain and the TSP type-1 domains are important for a tight interaction with theextracellular matrix Domain : The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion,thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon theactivation-peptide release activates the enzyme Similarity : Contains 1 disintegrin domainSimilarity : Contains 1 peptidase M12B domainSimilarity : Contains 2 TSP type-1 domains
Gene Function for ADAMTS5
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007038 Applied Biosystems Silencer ® siRNAs for ADAMTS5 Sigma-Aldrich siRNA and siRNA Panels for ADAMTS5 Sigma-Aldrich shRNA Panels and shRNA for ADAMTS5 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_007038                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_007038                                  untagged cDNA clone in CMV expression vector: NM_007038  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_007038 UniProtKB/Swiss-Prot: ATS5_HUMAN, Q9UNA0 Function : Cleaves aggrecan, a cartilage proteoglycan, and may be involved in its turnover. May playan important role in the destruction of aggrecan in arthritic diseases. May play a role inproteolytic processing mostly during the peri-implantation period Catalytic activity : Cleaves aggrecan at the 392-Glu- -Ala-393 siteEnzyme Number (IUBMB): EC 3.4.24.-
Genatlas biochemistry entry for ADAMTS5 :a disintegrin-like and metalloprotease domain (reprolysin type),aggrecanase 2,with thrombospondintype 1 motif 5,highly expressed in the peri-implantation period in mouse embryo and trophoblastand in adult tissues,extracellular matrix protein
4 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Adamts5) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ADAMTS5
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for ADAMTS5 5/15 Interacting proteins for ADAMTS5 (ENSP00000284987 3 ) via UniProtKB, MINT, and/or STRING (see all 15
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
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Drugs & Compounds for ADAMTS5 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for ADAMTS5
Browse Tocris compounds for ADAMTS5 2 Novoseek chemical compound relationships for ADAMTS5 gene
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Transcripts for ADAMTS5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007038 Sigma-Aldrich siRNA and siRNA Panels for ADAMTS5 Sigma-Aldrich shRNA Panels and shRNA for ADAMTS5 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_007038
REFSEQ mRNAs for ADAMTS5 gene: NM_007038.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_007038
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_007038                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_007038                                  untagged cDNA clone in CMV expression vector: NM_007038  
Additional cDNA sequence: AF086299.1 AF086358.1 AF141293.1 AF142099.1 AK094057.1 AK095905.1 BC093775.1 BC093777.1
4 DOTS entries : DT.205954 DT.102571 DT.121130367 DT.100675235
24/81 AceView cDNA sequences (see all 81
):H88919 AI269148 BQ184915 BX498507 BM127085 H89140 BE856159 AA425042 BM932138 CD515844 AW612318 AI273671 AL598390 BF060767 AF141293 AI375941 BV188458 AI889340 AI123555 AA039479 BE677919 AF142099 BM716635 AI338748
highest scoring ESTs for ADAMTS5 :AF142099 AI084504 AI123555 F37480 AA046217 AA233151 AA233227 AA334544 AA362889 AA425042
Unigene Cluster for ADAMTS5: ADAM metallopeptidase with thrombospondin type 1 motif, 5 Hs.58324 [show with all ESTs ] Unigene Representative Sequence: NM_007038 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000284987
Expression for ADAMTS5
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ADAMTS5 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ADAMTS5 1 / 2 / 3
12 probe-sets matching ADAMTS5 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTTTTAAGTASOURCE GeneReport for Unigene cluster: Hs.58324 UniProtKB/Swiss-Prot: ATS5_HUMAN, Q9UNA0 Tissue specificity : Expressed at low level in placenta primarily but also detected in heart andbrain, cervix, uterus, bladder, esophagus, rib cartilage, chondroblastoma, fibrous tissue and ajoint capsule from an arthritic patient
Orthologs for ADAMTS5
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ADAMTS5 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for ADAMTS5 ENSEMBL Gene Tree for ADAMTS5 Paralogs for ADAMTS5 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ADAMTS5 gene ADAMTS4 2 ADAMTS1 2 ADAMTS8 2
SNPs/Variants for ADAMTS5 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ADAMTS5 (up to first 250kb)
Disorders & Mutations for ADAMTS5
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605007 6 Novoseek disease relationships for ADAMTS5 gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
osteoarthritis
78.88
16
18328163 (2), 15800624 (2), 18240210 (2), 11801682 (1) (see all 8 )
arthritis
53.79
7
18992360 (1), 12020478 (1), 18247274 (1)
necrosis
31.91
3
16806998 (1), 11520168 (1), 15880812 (1)
glioblastoma
16.06
9
16133547 (4), 16003758 (3)
rheumatoid arthritis
10.65
1
11801682 (1)
tumors
1.66
4
16003758 (1), 16806998 (1), 11520168 (1), 15880812 (1)
About this table Human Genome Epidemiology Navigator: ADAMTS5 (1 document)
Medical News for ADAMTS5 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ADAMTS5 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/90 PubMed articles for ADAMTS5 gene (see all 90
): Cloning and characterization of ADAMTS11, an aggrecanase from the ADAMTS family. (PubMed id 10438522) 1, 2, 3, 4 Abbaszade I.... Burn T.C. (1999) ADAM-TS5, ADAM-TS6, and ADAM-TS7, novel members of a new family of zinc metalloproteases. (PubMed id 10464288) 1, 3, 4 Hurskainen T.L.... Apte S.S. (1999) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The DNA sequence of human chromosome 21. (PubMed id 10830953) 3, 4 Hattori M....Yaspo M.L. (2000) Characterization of human aggrecanase 2 (ADAM-TS5): substrate specificity studies and comparison with aggrecanase 1 (ADAM-TS4). (PubMed id 12392761) 1, 3 Tortorella M.D....Arner E. (2002) Proteolytic activities of human ADAMTS-5: comparative studies with ADAMTS-4. (PubMed id 17430884) 1, 3 Gendron C....Nagase H. (2007) Expression and activity of ADAMTS-5 in synovium. (PubMed id 11231277) 1, 3 Vankemmelbeke M.N....Buttle D.J. (2001) Functional differences of the catalytic and non-catalytic domains in human ADAMTS-4 and ADAMTS-5 in aggrecanolytic activity. (PubMed id 18156631) 1, 3 Fushimi K....Nagase H. (2008) Expression of ADAMTS-5 in deformed human temporomandibular joint discs. (PubMed id 18830934) 1, 3 Matsumoto T....Fujita S. (2008) Human glioblastomas overexpress ADAMTS-5 that degrades brevican. (PubMed id 16133547) 1, 3 Nakada M....Okada Y. (2005)
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Genome Databases showing ADAMTS5
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ADAMTS5
(According to HUGE )
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Specialized Databases showing ADAMTS5 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ADAMTS5 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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