ADAMTS4 Gene
protein-coding GIFtS : 62
GC01M159426
ADAM metallopeptidase with thrombospondin type 1 motif, 4 (Previous names: a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 4 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for ADAMTS4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ADAM-TS4 3 ADAMTS-2 1 , 2 ADAMTS-4 2 , 3 ADMP-1 1 , 2 , 3 Aggrecanase-1 3 EC 3.4.24.82 3 KIAA0688 1 , 2 , 3 OTTHUMP00000032249 2 aggrecanase-1 2
Descriptions ADAM metallopeptidase with thrombospondin type 1 motif, 4 2 ADAM-TS 4 3 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 4 1 , 2
Search outside databases for aliases for ADAMTS4 genePrevious GC identifers: GC01M158870 GC01M156891 GC01M157937 GC01M158376 GC01M157972
Summaries for ADAMTS4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ADAMTS4 : This gene encodes a member of the ADAMTS (a disintegrin and metalloproteinase with thrombospondinmotifs) protein family. Members of the family share several distinct protein modules, including apropeptide region, a metalloproteinase domain, a disintegrin-like domain, and a thrombospondintype 1 (TS) motif. Individual members of this family differ in the number of C-terminal TS motifs,and some have unique C-terminal domains. The enzyme encoded by this gene lacks a C-terminal TSmotif. It is responsible for the degradation of aggrecan, a major proteoglycan of cartilage, andbrevican, a brain-specific extracellular matrix protein. The cleavage of aggrecan and brevicansuggests key roles of this enzyme in arthritic disease and in the central nervous system,potentially, in the progression of glioma. [provided by RefSeq] UniProtKB/Swiss-Prot: ATS4_HUMAN, O75173 Function : Cleaves aggrecan, a cartilage proteoglycan, and may be involved in its turnover. May playan important role in the destruction of aggrecan in arthritic diseases. Could also be a criticalfactor in the exacerbation of neurodegeneration in Alzheimer disease. Cleaves aggrecan at the'392-Glu- -Ala-393' site
Gene Wiki entry for ADAMTS4
Genomic Location for ADAMTS4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ADAMTS4 gene Entrez Gene cytogenetic band: 1q21-q23 Ensembl cytogenetic band: 1q23.3 HGNC cytogenetic band: 1q31-q32 ADAMTS4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M159426:
(about GC identifiers )
Start:
159,426,162 bp from pter
End:
159,435,469 bp from pter
Size:
9,308 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for ADAMTS4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ATS4_HUMAN, O75173 (See
protein sequence )Recommended Name: A disintegrin and metalloproteinase with thrombospondin motifs 4 precursor Size : 837 amino acids; 90225 Da
Cofactor : Binds 1 zinc ion per subunit (By similarity)
Subcellular location : Secreted, extracellular space, extracellular matrix (By similarity)
Caution : Has sometimes been referred to as ADAMTS2
PDB structure from and Proteopedia : 2RJP (3D)
 3B2Z (3D)
 
Secondary accessions : Q5VTW2 Q6P4Q8 Q6UWA8 Q9UN83
Post-translational modifications:
The precursor is cleaved by a furin endopeptidase1
REFSEQ proteins: NP_005090.3 ENSEMBL proteins: ENSP00000356975 ENSP00000356974 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ADAMTS4: Assays for ADAMTS4:
Protein
Domains/ Families for ADAMTS4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O75173 ProtoNet protein and cluster: O75173
4 Blocks protein families : IPB000884 Thrombospondin IPB001762 Disintegrin IPB008085 Thrombospondin type 1 repeat signature IPB010294 ADAM-TS Spacer 1 UniProtKB/Swiss-Prot: ATS4_HUMAN, O75173 Domain : The spacer domain and the TSP type-1 domains are important for a tight interaction with theextracellular matrix Domain : The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion,thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon theactivation-peptide release activates the enzyme Similarity : Contains 1 disintegrin domainSimilarity : Contains 1 peptidase M12B domainSimilarity : Contains 1 TSP type-1 domain
Gene Function for ADAMTS4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005099 Applied Biosystems Silencer ® siRNAs for ADAMTS4 Sigma-Aldrich siRNA and siRNA Panels for ADAMTS4 Sigma-Aldrich shRNA Panels and shRNA for ADAMTS4 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005099                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005099                                  untagged cDNA clone in CMV expression vector: NM_005099  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005099 UniProtKB/Swiss-Prot: ATS4_HUMAN, O75173 Function : Cleaves aggrecan, a cartilage proteoglycan, and may be involved in its turnover. May playan important role in the destruction of aggrecan in arthritic diseases. Could also be a criticalfactor in the exacerbation of neurodegeneration in Alzheimer disease. Cleaves aggrecan at the'392-Glu- -Ala-393' site Catalytic activity : Glutamyl endopeptidase; bonds cleaved include 370-Thr-Glu-Gly-Glu--Ala-Arg-Gly-Ser-377 in the interglobular domain of mammalian aggrecan Induction : By interleukin-1Enzyme Number (IUBMB): EC 3.4.24.82
Genatlas biochemistry entry for ADAMTS4 :a disintegrin-like and metalloprotease domain (reprolysin type),aggrecanase 1,with thrombospondintype 1 motif 4,potentially degrading aggrecan in arthritis disease,extracellular matrix protein
6 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Adamts4) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ADAMTS4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ADAMTS4 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for ADAMTS4 5/24 Interacting proteins for ADAMTS4 (ENSP00000356975 3 ) via UniProtKB, MINT, and/or STRING (see all 24
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for ADAMTS4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for ADAMTS4
Browse Tocris compounds for ADAMTS4 4 Novoseek chemical compound relationships for ADAMTS4 gene
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Transcripts for ADAMTS4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005099 Sigma-Aldrich siRNA and siRNA Panels for ADAMTS4 Sigma-Aldrich shRNA Panels and shRNA for ADAMTS4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005099
REFSEQ mRNAs for ADAMTS4 gene: NM_005099.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005099
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005099                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005099                                  untagged cDNA clone in CMV expression vector: NM_005099  
Additional cDNA sequence: AB014588.1 AF148213.1 AK291573.1 AY358886.1 BC063293.1 DQ364570.1
5 DOTS entries : DT.40295660 DT.403409 DT.97766329 DT.100707470 DT.92419173
24/33 AceView cDNA sequences (see all 33
):AI682879 AB014588 AY358886 AA603151 NM_005099 AL712592 AI678879 BF771897 BC030812 BP349742 AL603427 BC063293 BQ694677 CD619814 BP342809 BX503840 BG704864 AF148213 BM069747 BI602707 D45652 BM069515 CD619811 CD619809
highest scoring ESTs for ADAMTS4 :AB014588 AF148213 AL603427 AL712592 AY358886 BC063293 BG540485 BI602707 BM069747 BX503840
Unigene Cluster for ADAMTS4: ADAM metallopeptidase with thrombospondin type 1 motif, 4 Hs.211604 [show with all ESTs ] Unigene Representative Sequence: NM_005099 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS4 ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b SP1 :             -     -         SP2 :                         SP3 :                         SP4 :                         SP5 :                        
About this scheme ECgene alternative splicing isoforms for ADAMTS4 2 Ensembl transcripts including schematic representations : ENST00000367996
ENST00000367995
Expression for ADAMTS4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ADAMTS4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ADAMTS4 1 / 2 / 3
2 probe-sets matching ADAMTS4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCTCTGAGCASOURCE GeneReport for Unigene cluster: Hs.211604 UniProtKB/Swiss-Prot: ATS4_HUMAN, O75173 Tissue specificity : Expressed in brain, lung and heart. Expressed at very low level in placenta andskeletal muscles
Orthologs for ADAMTS4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ADAMTS4 gene from 5 species
About this table Species with no ortholog for ADAMTS4 ENSEMBL Gene Tree for ADAMTS4 Paralogs for ADAMTS4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ADAMTS4 gene ADAMTS1 2 ADAMTS8 2 ADAMTS5 2
SNPs/Variants for ADAMTS4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ADAMTS4 (up to first 250kb)
Disorders & Mutations for ADAMTS4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603876 10/11 Novoseek disease relationships for ADAMTS4 gene (see all 11
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
osteoarthritis
76.62
20
18328163 (3), 11801682 (1), 16099106 (1), 17470431 (1) (see all 11 )
arthritis
54.35
8
11311239 (1), 17487981 (1), 18247274 (1), 10827174 (1) (see all 6 )
chondrosarcoma
43.47
3
11796708 (1), 14701864 (1)
necrosis
33.90
4
17968946 (1), 16806998 (1), 11520168 (1), 15880812 (1)
rheumatoid arthritis
32.27
6
11801682 (1), 16099106 (1), 15161923 (1), 14534304 (1)
glioblastoma
30.24
4
16003758 (3)
glioma
16.32
2
11217446 (1)
pathological processes
10.24
1
15334469 (1)
cancer
3.96
2
19260128 (1), 17355265 (1)
tumors
3.21
4
17968946 (1), 16806998 (1), 11520168 (1), 15880812 (1)
About this table Human Genome Epidemiology Navigator: ADAMTS4 (2 documents)
Medical News for ADAMTS4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ADAMTS4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/140 PubMed articles for ADAMTS4 gene (see all 140
): The thrombospondin motif of aggrecanase-1 (ADAMTS-4) is critical for aggrecan substrate recognition and cleavage. (PubMed id 10827174) 1, 3, 4 Tortorella M.D.... Arner E.C. (2000) Purification and cloning of aggrecanase-1: a member of the ADAMTS family of proteins. (PubMed id 10356395) 1, 3, 4 Tortorella M.D.... Arner E.C. (1999) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 3, 4 Clark H.F....Gray A. (2003) ADAMTS: a novel family of proteases with an ADAM protease domain and thrombospondin 1 repeats. (PubMed id 10094461) 2, 3 Tang B.L. and Hong W. (1999) Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9734811) 3, 4 Ishikawa K....Ohara O. (1998) ADAMTS4 (aggrecanase-1) interaction with the C-terminal domain of fibronectin inhibits proteolysis of aggrecan. (PubMed id 15161923) 1, 3 Hashimoto G....Okada Y. (2004) Functional differences of the catalytic and non-catalytic domains in human ADAMTS-4 and ADAMTS-5 in aggrecanolytic activity. (PubMed id 18156631) 1, 3 Fushimi K....Nagase H. (2008) Expression of ADAMTS-4 (aggrecanase-1) and possible involvement in regression of lumbar disc herniation. (PubMed id 16741450) 1, 3 Hatano E....Matsumoto T. (2006)
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Genome Databases showing ADAMTS4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ADAMTS4
(According to HUGE )
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Specialized Databases showing ADAMTS4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ADAMTS4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ADAMTS4:
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Aliases for ADAMTS4
Databases for ADAMTS4
Disorders for ADAMTS4
Domains/Families for ADAMTS4
Drugs/Compounds for ADAMTS4
Expression for ADAMTS4
Function for ADAMTS4
Location for ADAMTS4
Medical News for ADAMTS4
Orthologs for ADAMTS4
Paralogs for ADAMTS4
Pathways/Interactions for ADAMTS4
Proteins for ADAMTS4
Publications for ADAMTS4
SNPs for ADAMTS4
Search Box for ADAMTS4
Services for ADAMTS4
Summaries for ADAMTS4
Technologies for ADAMTS4
Transcripts for ADAMTS4
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009