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Aliases for ADAMTS19-AS1 Gene

Subcategory (RNA class) for ADAMTS19-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ADAMTS19-AS1 Gene

  • ADAMTS19 Antisense RNA 1 2 3 5
  • RP11-346A9.1 3

External Ids for ADAMTS19-AS1 Gene

Previous GeneCards Identifiers for ADAMTS19-AS1 Gene

  • GC05M128796
  • GC00U935695

Summaries for ADAMTS19-AS1 Gene

GeneCards Summary for ADAMTS19-AS1 Gene

ADAMTS19-AS1 (ADAMTS19 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADAMTS19-AS1 Gene

Genomics for ADAMTS19-AS1 Gene

Regulatory Elements for ADAMTS19-AS1 Gene

Enhancers for ADAMTS19-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F129495 0.4 ENCODE 11.2 -36.1 -36146 2.7 SMARCA4 ADAMTS19 ADAMTS19-AS1 PIR62990
GH05F129459 0.9 ENCODE 0.8 -0.1 -88 3.5 ZNF76 SIN3A ZNF2 RAD21 ZEB1 ZNF121 GLIS2 ZNF302 SCRT2 ZNF263 ADAMTS19 ADAMTS19-AS1 PIR62990
GH05F129476 0.4 ENCODE 0.3 -17.1 -17143 2.0 ZBTB40 ADAMTS19 ADAMTS19-AS1 PIR62990
GH05F129589 0.3 FANTOM5 0.1 -128.7 -128744 0.3 ADAMTS19 PIR62990 ADAMTS19-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ADAMTS19-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ADAMTS19-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001289687 -311 2800 ZNF76 SIN3A ZNF2 RAD21 ZEB1 ZNF121 GLIS2 ZNF302 SCRT2 ZNF263

Genomic Location for ADAMTS19-AS1 Gene

Chromosome:
5
Start:
129,459,559 bp from pter
End:
129,460,689 bp from pter
Size:
1,131 bases
Orientation:
Minus strand

Genomic View for ADAMTS19-AS1 Gene

Genes around ADAMTS19-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADAMTS19-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADAMTS19-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADAMTS19-AS1 Gene

Proteins for ADAMTS19-AS1 Gene

Post-translational modifications for ADAMTS19-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ADAMTS19-AS1 Gene

Domains & Families for ADAMTS19-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ADAMTS19-AS1 Gene

Function for ADAMTS19-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ADAMTS19-AS1 Gene

Localization for ADAMTS19-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ADAMTS19-AS1 Gene

Pathways & Interactions for ADAMTS19-AS1 Gene

SuperPathways for ADAMTS19-AS1 Gene

No Data Available

Interacting Proteins for ADAMTS19-AS1 Gene

Gene Ontology (GO) - Biological Process for ADAMTS19-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ADAMTS19-AS1 Gene

Transcripts for ADAMTS19-AS1 Gene

mRNA/cDNA for ADAMTS19-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ADAMTS19-AS1 Gene

No ASD Table

Relevant External Links for ADAMTS19-AS1 Gene

GeneLoc Exon Structure for
ADAMTS19-AS1
ECgene alternative splicing isoforms for
ADAMTS19-AS1

Expression for ADAMTS19-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ADAMTS19-AS1 Gene

genes like me logo Genes that share expression patterns with ADAMTS19-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ADAMTS19-AS1 Gene

Orthologs for ADAMTS19-AS1 Gene

Evolution for ADAMTS19-AS1 Gene

ENSEMBL:
Gene Tree for ADAMTS19-AS1 (if available)
TreeFam:
Gene Tree for ADAMTS19-AS1 (if available)

No data available for Orthologs for ADAMTS19-AS1 Gene

Paralogs for ADAMTS19-AS1 Gene

No data available for Paralogs for ADAMTS19-AS1 Gene

Variants for ADAMTS19-AS1 Gene

Sequence variations from dbSNP and Humsavar for ADAMTS19-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10036717 -- 129,462,217(+) CAAAG(A/T)TGAAA intron-variant, upstream-variant-2KB
rs10044865 -- 129,462,248(+) ACTCT(G/T)ACAGT intron-variant, upstream-variant-2KB
rs10045459 -- 129,462,374(+) AATCC(A/G)ATCTG intron-variant, upstream-variant-2KB
rs10045471 -- 129,462,561(+) TGTCA(C/T)GATTC intron-variant, upstream-variant-2KB
rs111542204 -- 129,460,373(+) AAGCC(C/G)CGGCC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ADAMTS19-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2752060 CNV gain 17911159
esv2759377 CNV loss 17122850
esv2763498 CNV gain 21179565
nsv599704 CNV gain 21841781
nsv830486 CNV gain 17160897

Relevant External Links for ADAMTS19-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADAMTS19-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ADAMTS19-AS1 Gene

Disorders for ADAMTS19-AS1 Gene

Relevant External Links for ADAMTS19-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADAMTS19-AS1

No disorders were found for ADAMTS19-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ADAMTS19-AS1 Gene

Publications for ADAMTS19-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for ADAMTS19-AS1 Gene

Sources for ADAMTS19-AS1 Gene

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