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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ADAD1 Gene

protein-coding   GIFtS: 45
GCID: GC04P123300

adenosine deaminase domain containing 1 (testis-specific)
 Explore 12 diseases affiliated with
ADAD1 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for ADAD1    

Aliases
for ADAD1 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Adenosine Deaminase Domain Containing 1 (Testis-Specific)1 2
Tenr1 2
Testis Nuclear RNA-Binding Protein2 3
Adenosine Deaminase Domain-Containing Protein 12
TENR3

External Ids:    HGNC: 307131   Entrez Gene: 1326122   Ensembl: ENSG000001641137   OMIM: 6141305   UniProtKB: Q96M933   

Export aliases for ADAD1 gene to outside databases

Previous GC identifers: GC04P123519 GC04P119026


Summaries
for ADAD1 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
UniProtKB/Swiss-Prot: ADAD1_HUMAN, Q96M93
Function: Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)




Genomic Views
for ADAD1 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_016354.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ADAD1 gene promoter:
         HFH-3   SRF   ATF-2   SRF (504 AA)   NF-AT   FOXI1   NF-AT2   NF-AT3   c-Myb   NF-AT1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): ADAD1 promoter sequence
   Search SABiosciences Chromatin IP Primers for ADAD1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ADAD1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q27   Ensembl cytogenetic band:  4q27   HGNC cytogenetic band: 4q27

ADAD1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ADAD1 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P123300:  view genomic region     (about GC identifiers)

Start:
 123,300,121 bp from pter      End:
 123,350,957 bp from pter
Size:
 50,837 bases      Orientation:
 plus strand

Proteins
for ADAD1 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: ADAD1_HUMAN, Q96M93 (See protein sequence)
Recommended Name: Adenosine deaminase domain-containing protein 1  
Size: 576 amino acids; 64411 Da
Subcellular location: Nucleus (By similarity)
Secondary accessions: A6NKN4 B7WPB0 D3DNX2 Q8IWG6 Q8NA06
Alternative splicing: 3 isoforms:  Q96M93-1   Q96M93-2   Q96M93-3   

Explore the universe of human proteins at neXtProt for ADAD1: NX_Q96M93

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96M93

    • ADAD1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (3 alternative transcripts): 
    NP_001152757.1  NP_001152767.1  NP_640336.1  

    ENSEMBL proteins: 
     ENSP00000390510   ENSP00000296513   ENSP00000397254   ENSP00000373376   ENSP00000373377  

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    Novus Biologicals ADAD1 Protein
    Novus Biologicals ADAD1 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ADAD1

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--


    ADAD1 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for ADAD1

    Protein Domains /
    Families
    for ADAD1 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    ADAD1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR002466 A_deamin
     IPR001159 Ds-RNA-bd
     IPR014720 dsRNA-bd-like_dom

    Graphical View of Domain Structure for InterPro Entry Q96M93

    ProtoNet protein and cluster: Q96M93

    1 Blocks protein family: IPB002466 Adenosine deaminase/editase

    UniProtKB/Swiss-Prot: ADAD1_HUMAN, Q96M93
    Similarity: Belongs to the ADAD family
    Similarity: Contains 1 A to I editase domain
    Similarity: Contains 1 DRBM (double-stranded RNA-binding) domain


    Function
    for ADAD1 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: ADAD1_HUMAN, Q96M93
    Function: Plays a role in spermatogenesis. Binds to RNA but not to DNA (By similarity)

    miRNA
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    Inhib. RNA
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    OriGene siRNA: ADAD1
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    Gene Editing
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    Clone
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    Cell Line
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    Search LifeMap BioReagents cell lines for ADAD1

    In Situ Assay
    Products:       
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ADAD1

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003723RNA binding ----
    GO:0003725double-stranded RNA binding IEA--
    GO:0004000adenosine deaminase activity IEA--


    ADAD1 for ontologies           About GeneDecksing


    Animal Models:
         1 MGI mutant phenotype (inferred from 1 allele) (MGI details for Adad1):
     reproductive system 

    ADAD1 for phenotypes           About GeneDecksing


    Pathways & Interactions
    for ADAD1 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ADAD1

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006396RNA processing IEA--
    GO:0007275multicellular organismal development IEA--
    GO:0007286spermatid development IEA--


    ADAD1 for ontologies           About GeneDecksing



    Drugs & Compounds
    for ADAD1 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ADAD1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ADAD1
    2 Novoseek chemical compound relationships for ADAD1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    pyrimidine 23.5 1 9756848 (1)
    tyrosine 0 2 9202153 (1), 16996007 (1)

    Search CenterWatch for drugs/clinical trials and news about ADAD1 

    Transcripts
    for ADAD1 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for ADAD1 gene (3 alternative transcripts): 
    NM_001159285.1  NM_001159295.1  NM_139243.3  

    Unigene Cluster for ADAD1:

    Adenosine deaminase domain containing 1 (testis-specific)
    Hs.518957  [show with all ESTs]
    Unigene Representative Sequence: NM_139243
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000446706 ENST00000296513(uc003ieo.3) ENST00000464160 ENST00000439307
    ENST00000388724(uc003iep.3) ENST00000388725(uc003ieq.3) ENST00000492454


    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ADAD1
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    Inhib. RNA
    Products:             		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ADAD1 (see all 7)
    OriGene shRNA RFP: ADAD1
    OriGene siRNA: ADAD1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ADAD1
    Clone
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    GenScript: all cDNA clones in your preferred vector (see all 3): ADAD1 (NM_139243)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ADAD1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ADAD1 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ADAD1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ADAD1

    Additional cDNA sequence: 

    AK057303.1 AK093297.1 BC040229.1 

    7 DOTS entries:

    DT.40299394  DT.110002  DT.95369417  DT.100019358  DT.97785287  DT.95149417  DT.121225499 

    24/71 AceView cDNA sequences (see all 71):

    NM_139243 AK057303 BE550296 BP370294 BP370647 CD636788 AI968403 CD636796 
    CD636792 BX111248 CD636783 CD636794 AA934788 AW629069 AW341495 AW237109 
    BC040229 AA432201 AX748040 AW183912 BG722173 AA774419 BG721119 BU568552 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for ADAD1    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14a · 14b
    SP1:                          -     -     -                                                                                                   
    SP2:                                      -                                                           -                                       
    SP3:                                            -                                                                                             
    SP4:                                                                                                                                          
    SP5:                          -     -     -                                                                                                   


    ECgene alternative splicing isoforms for ADAD1

    Expression
    for ADAD1 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ADAD1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGAAATAGGC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    ADAD1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    TestisTestis CordXY Germ CellsGerm Cells, Male Gametocytes
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ADAD1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ADAD1

    SOURCE GeneReport for Unigene cluster: Hs.518957
        SABiosciences Custom PCR Arrays for ADAD1
    Primer
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    In Situ
    Assay Products:     
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    Orthologs
    for ADAD1 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ADAD1 gene from 7/17 species (see all 17)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    chicken
    (Gallus gallus)    		 Aves ADAD11 adenosine deaminase domain containing 1 (testis-specific) 67.83(n)
    61.96(a)    		   422669  XM_420624.3  XP_420624.3 
    lizard
    (Anolis carolinensis)    		 Reptilia ADAD16
    		 --
    		 74(a)
    		 1 ↔ 1
    		 5(138702584-138715446)
    African clawed frog
    (Xenopus laevis)    		 Amphibia Xl.186402 Xenopus laevis transcribed sequence with weak similarity more 76.64(n)    BU901109.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii wufi42e082 Transcribed sequence with weak similarity to protein more 73.22(n)    AW153833.1 
    worm
    (Caenorhabditis elegans)    		 Secernentea D2005.16
    adr-16
    		 Protein D2005.1
    Adenosine Deaminase that acts on RNA family member...
    		 26(a)
    12(a)
    		 many ↔ many
    many ↔ many
    		 I(7784493-7785619)
    I(7773411-7777572)
    thale cress
    (Arabidopsis thaliana)    		 eudicotyledons AT1G017606
    		 Adenosine-deaminase (editase) domain-containing pr...
    		 20(a)
    		 1 → many
    		 1(276266-278448)
    rice
    (Oryza sativa)    		 Liliopsida --
    		 tRNA-specific adenosine deaminase 1, putative, exp...
    		 18(a)
    		 1 → many
    		 4(34707824-34713684)


    ENSEMBL Gene Tree for ADAD1 (if available)
    TreeFam Gene Tree for ADAD1 (if available) 

    Paralogs
    for ADAD1 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ADAD1 gene
    ADAR2  ADARB22  ADAT12  ADARB12  ADAD22  

    ADAD1 for paralogs           About GeneDecksing


    3 Pseudogenes.org Pseudogenes for ADAD1
    PGOHUM00000238694 PGOHUM00000235056 PGOHUM00000237999


    Genomic Variants
    for ADAD1 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ADAD1
    DNA2.0 Custom Variant and Variant Library Synthesis for ADAD1

    Disorders / Diseases
    for ADAD1 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    ADAD1 for disorders           About GeneDecksing

    OMIM gene information: 614130    OMIM disorders: --

    12 diseases for ADAD1:    About MalaCards
    dna topoisomerase i    myxoid liposarcoma    myotonic dystrophy    liposarcoma
    celiac disease    rheumatoid arthritis    down syndrome    multiple sclerosis
    arthritis    breast cancer    thyroiditis    neuronitis

    Human Genome Epidemiology (HuGE) Navigator: ADAD1 (7 documents)

    Export disorders for ADAD1 gene to outside databases

    Publications
    for ADAD1 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ADAD1 gene, integrated from 9 sources (see all 89):
    (articles sorted by number of sources associating them with ADAD1)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. Statistical modelling and phylogenetic analysis of a deaminase domain. (PubMed id 9541871)1, 3 Mian I.S....Chatterjee A. (1998)
    3. Distribution of Tenr, an RNA-binding protein, in a lattice-like network within the spermatid nucleus in the mouse. (PubMed id 7543294)1, 3 Schumacher J.M....Braun R.E. (1995)
    4. Genome-wide association analysis of autoantibody posit ivity in type 1 diabetes cases. (PubMed id 21829393)1 Plagnol V....Todd J.A. (2011)
    5. Meta-analysis identifies 29 additional ulcerative col itis risk loci, increasing the number of confirmed associations to 47. (PubMed id 21297633)1 Anderson C.A....Rioux J.D. (2011)
    6. Only one independent genetic association with rheumat oid arthritis within the KIAA1109-TENR-IL2-IL21 locus in Caucasian sample sets: confirmation of association of rs6822844 with rheumatoid arthritis at a genome -wide level of significance. (PubMed id 20553587)1 Hollis-Moffatt J.E....Merriman T.R. (2010)
    7. Genome-wide searching of rare genetic variants in WTC CC data. (PubMed id 20549515)1 Feng T. and Zhu X. (2010)
    8. Testing for the association of the KIAA1109/Tenr/IL2/IL21 gene region with rheumatoid arthritis in a European family-based study. (PubMed id 19302705)1 Teixeira V.H....Petit-Teixeira E. (2009)
    9. Multiple sclerosis association study with the TENR-IL 2-IL21 region in a Spanish population. (PubMed id 19523143)1 Fedetz M....Matesanz F. (2009)
    10. Newly identified genetic risk variants for celiac disease related to the immune response. (PubMed id 18311140)1 Hunt K.A.... van Heel D.A. (2008)

    External Searches for ADAD1 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing ADAD1 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 132612 HGNC: 30713 AceView: Tenr Ensembl:ENSG00000164113 euGenes: HUgn132612
    ECgene: ADAD1 H-InvDB: ADAD1

    Other Databases showing ADAD1 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing ADAD1 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ADAD1 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for ADAD1 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for ADAD1 gene:
    Search GeneIP for patents involving ADAD1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    In Situ Hybridization Assays from
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