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Aliases for ACVR2B-AS1 Gene

Subcategory (RNA class) for ACVR2B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ACVR2B-AS1 Gene

  • ACVR2B Antisense RNA 1 2 3 5
  • ACVR2B Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ACVR2B-AS1 Gene

Summaries for ACVR2B-AS1 Gene

GeneCards Summary for ACVR2B-AS1 Gene

ACVR2B-AS1 (ACVR2B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACVR2B-AS1 Gene

Genomics for ACVR2B-AS1 Gene

Regulatory Elements for ACVR2B-AS1 Gene

Enhancers for ACVR2B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F038163 0.9 FANTOM5 ENCODE 10.2 +287.5 287456 7.7 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 SIN3A FEZF1 DMAP1 OXSR1 ACAA1 MYD88 C3orf35 ITGA9-AS1 GORASP1 SLC22A13 ACVR2B-AS1 NDUFAF4P3 VILL
GH03F038108 0.4 Ensembl 10.1 +345.9 345920 1.0 HDAC1 ATF1 PKNOX1 ZBTB40 ZNF766 GATA2 CREM USF2 ZEB2 CREB3 TCEA1P2 NDUFAF4P3 ACVR2B-AS1 PLCD1 PIR60395 GC03M038048
GH03F038147 1.2 FANTOM5 Ensembl ENCODE 10.1 +303.3 303290 8.2 ATF1 ZFP64 ZNF121 GATA2 FOS NFYC REST MEF2D MAFF SMARCA4 VILL MYD88 OXSR1 TCEA1P2 ACAA1 SLC22A13 NDUFAF4P3 ACVR2B-AS1 PLCD1
GH03F039382 0.4 ENCODE 10.1 -929.0 -928963 2.7 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 FOS RPSA GORASP1 SNORA62 ACVR2B-AS1 XIRP1 SLC25A38 GC03M039393
GH03F039403 0.2 ENCODE 10.1 -952.2 -952237 6.2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 RPSA SNORA62 ACVR2B-AS1 GC03P039409
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ACVR2B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ACVR2B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001361420 20 3201 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 ZNF143

Genomic Location for ACVR2B-AS1 Gene

Chromosome:
3
Start:
38,451,027 bp from pter
End:
38,454,820 bp from pter
Size:
3,794 bases
Orientation:
Minus strand

Genomic View for ACVR2B-AS1 Gene

Genes around ACVR2B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACVR2B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACVR2B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACVR2B-AS1 Gene

Proteins for ACVR2B-AS1 Gene

Post-translational modifications for ACVR2B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACVR2B-AS1 Gene

Domains & Families for ACVR2B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACVR2B-AS1 Gene

Function for ACVR2B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACVR2B-AS1 Gene

Localization for ACVR2B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ACVR2B-AS1 Gene

Pathways & Interactions for ACVR2B-AS1 Gene

SuperPathways for ACVR2B-AS1 Gene

No Data Available

Interacting Proteins for ACVR2B-AS1 Gene

Gene Ontology (GO) - Biological Process for ACVR2B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACVR2B-AS1 Gene

Transcripts for ACVR2B-AS1 Gene

mRNA/cDNA for ACVR2B-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACVR2B-AS1 Gene

ACVR2B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ACVR2B-AS1 Gene

No ASD Table

Relevant External Links for ACVR2B-AS1 Gene

GeneLoc Exon Structure for
ACVR2B-AS1
ECgene alternative splicing isoforms for
ACVR2B-AS1

Expression for ACVR2B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACVR2B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ACVR2B-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x6.8).

SOURCE GeneReport for Unigene cluster for ACVR2B-AS1 Gene:

Hs.570596
genes like me logo Genes that share expression patterns with ACVR2B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ACVR2B-AS1 Gene

Orthologs for ACVR2B-AS1 Gene

Evolution for ACVR2B-AS1 Gene

ENSEMBL:
Gene Tree for ACVR2B-AS1 (if available)
TreeFam:
Gene Tree for ACVR2B-AS1 (if available)

No data available for Orthologs for ACVR2B-AS1 Gene

Paralogs for ACVR2B-AS1 Gene

No data available for Paralogs for ACVR2B-AS1 Gene

Variants for ACVR2B-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACVR2B-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111745450 -- 38,455,406(+) ACACA(G/T)GCAGC intron-variant, upstream-variant-2KB
rs112514383 -- 38,451,365(+) CTTCT(A/G)TAATC intron-variant, nc-transcript-variant
rs114381380 -- 38,456,054(+) GCAGG(A/G)CGGCA intron-variant, upstream-variant-2KB
rs114983108 -- 38,455,627(+) GTAGT(A/G)GCGCG intron-variant, upstream-variant-2KB
rs115867892 -- 38,452,764(+) GTTTG(A/G)CTAGG intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ACVR2B-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1073218 CNV deletion 25765185
nsv1144986 CNV deletion 24896259
nsv954465 CNV deletion 24416366

Relevant External Links for ACVR2B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACVR2B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ACVR2B-AS1 Gene

Disorders for ACVR2B-AS1 Gene

Relevant External Links for ACVR2B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACVR2B-AS1

No disorders were found for ACVR2B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACVR2B-AS1 Gene

Publications for ACVR2B-AS1 Gene

No publications were found for ACVR2B-AS1 Gene.

Products for ACVR2B-AS1 Gene

Sources for ACVR2B-AS1 Gene

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