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Aliases for ACTRT3 Gene

Aliases for ACTRT3 Gene

  • Actin-Related Protein T3 2 3
  • ARPM1 3 4 6
  • Actin Related Protein M1 2 3
  • Actin-Related Protein M1 3 4
  • ARP-T3 3 4

External Ids for ACTRT3 Gene

Previous GeneCards Identifiers for ACTRT3 Gene

  • GC03M169485
  • GC03M169487
  • GC03M169492
  • GC03M169497

Summaries for ACTRT3 Gene

GeneCards Summary for ACTRT3 Gene

ACTRT3 (Actin-Related Protein T3) is a Protein Coding gene. An important paralog of this gene is ACTB.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTRT3 Gene

Genomics for ACTRT3 Gene

Genomic Location for ACTRT3 Gene

Start:
169,766,921 bp from pter
End:
169,769,895 bp from pter
Size:
2,975 bases
Orientation:
Minus strand

Genomic View for ACTRT3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ACTRT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTRT3 Gene

No data available for Regulatory Elements for ACTRT3 Gene

Proteins for ACTRT3 Gene

  • Protein details for ACTRT3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYD9-ACTT3_HUMAN
    Recommended name:
    Actin-related protein T3
    Protein Accession:
    Q9BYD9
    Secondary Accessions:
    • Q96IS0
    • Q96NJ0

    Protein attributes for ACTRT3 Gene

    Size:
    372 amino acids
    Molecular mass:
    41008 Da
    Quaternary structure:
    • Interacts with PFN3.

neXtProt entry for ACTRT3 Gene

Proteomics data for ACTRT3 Gene at MOPED

Post-translational modifications for ACTRT3 Gene

No Post-translational modifications

Other Protein References for ACTRT3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ACTRT3 Gene

Domains for ACTRT3 Gene

Protein Domains for ACTRT3 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BYD9

UniProtKB/Swiss-Prot:

ACTT3_HUMAN :
  • Q9BYD9
Family:
  • Belongs to the actin family.
genes like me logo Genes that share domains with ACTRT3: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for ACTRT3 Gene

Function for ACTRT3 Gene

Gene Ontology (GO) - Molecular Function for ACTRT3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with ACTRT3: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ACTRT3

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ACTRT3 Gene

Localization for ACTRT3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ACTRT3 Gene

Cytoplasm, cytoskeleton. Cytoplasm. Nucleus.

Gene Ontology (GO) - Cellular Components for ACTRT3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001673 male germ cell nucleus IEA --
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
genes like me logo Genes that share ontologies with ACTRT3: view

No data available for Subcellular locations from COMPARTMENTS for ACTRT3 Gene

Pathways for ACTRT3 Gene

SuperPathways for ACTRT3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTRT3 Gene

None

No data available for Pathways by source for ACTRT3 Gene

Transcripts for ACTRT3 Gene

mRNA/cDNA for ACTRT3 Gene

(27) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTRT3 Gene

Actin-related protein T3:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ACTRT3

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACTRT3 Gene

No ASD Table

Relevant External Links for ACTRT3 Gene

GeneLoc Exon Structure for
ACTRT3
ECgene alternative splicing isoforms for
ACTRT3

Expression for ACTRT3 Gene

mRNA expression in normal human tissues for ACTRT3 Gene

mRNA differential expression in normal tissues according to GTEx for ACTRT3 Gene

This gene is overexpressed in Testis (21.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ACTRT3 Gene

SOURCE GeneReport for Unigene cluster for ACTRT3 Gene Hs.135411

mRNA Expression by UniProt/SwissProt for ACTRT3 Gene

Q9BYD9-ACTT3_HUMAN
Tissue specificity: Ubiquitously expressed.
genes like me logo Genes that share expressions with ACTRT3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for ACTRT3 Gene

Orthologs for ACTRT3 Gene

This gene was present in the common ancestor of animals.

Orthologs for ACTRT3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ACTRT3 35
  • 99.55 (n)
  • 99.19 (a)
ARPM1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ARPM1 35
  • 87.23 (n)
  • 81.52 (a)
ARPM1 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ACTRT3 35
  • 87.01 (n)
  • 83.6 (a)
ACTRT3 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Actrt3 35
  • 82.02 (n)
  • 79.4 (a)
Actrt3 16
Actrt3 36
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ACTRT3 36
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 34 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Actrt3 35
  • 80.86 (n)
  • 78.17 (a)
lizard
(Anolis carolinensis)
Reptilia ACTRT3 36
  • 58 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Arp53D 36
  • 44 (a)
OneToMany
Species with no ortholog for ACTRT3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ACTRT3 Gene

ENSEMBL:
Gene Tree for ACTRT3 (if available)
TreeFam:
Gene Tree for ACTRT3 (if available)

Paralogs for ACTRT3 Gene

Paralogs for ACTRT3 Gene

Selected SIMAP similar genes for ACTRT3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ACTRT3: view

Variants for ACTRT3 Gene

Sequence variations from dbSNP and Humsavar for ACTRT3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs1134063 -- 169,767,098(-) GGAAA(A/G)AAGGT utr-variant-3-prime
rs1134064 -- 169,767,062(-) TAGCA(A/G)AGGTA utr-variant-3-prime
rs1134840 -- 169,767,386(-) TGTGA(A/C)AGAAA utr-variant-3-prime
rs2068178 - 169,767,851(-) GTCTA(A/G)AGAAA missense, reference
rs4618260 -- 169,767,662(+) CCCGG(A/C)AAGGA reference, missense

Relevant External Links for ACTRT3 Gene

HapMap Linkage Disequilibrium report
ACTRT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ACTRT3 Gene

Disorders for ACTRT3 Gene

No disorders were found for ACTRT3 Gene.

No data available for UniProtKB/Swiss-Prot for ACTRT3 Gene

Publications for ACTRT3 Gene

  1. Identification of two cDNAs for human actin-related proteins (Arps) that have remarkable similarity to conventional actin. (PMID: 11750065) Harata M. … Hatta S. (Biochim. Biophys. Acta 2001) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Nuclear localization of profilin III-ArpM1 complex in mouse spermiogenesis. (PMID: 18692047) Hara Y. … Baba T. (FEBS Lett. 2008) 2 3
  5. Genome-wide association study identifies multiple loci associated with bladder cancer risk. (PMID: 24163127) Figueroa J.D. … Rothman N. (Hum. Mol. Genet. 2014) 3

Products for ACTRT3 Gene

Sources for ACTRT3 Gene

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