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Aliases for ACTRT3 Gene

Aliases for ACTRT3 Gene

  • Actin Related Protein T3 2 3
  • Actin Related Protein M1 2 3
  • Actin-Related Protein M1 3 4
  • ARP-T3 3 4
  • ARPM1 3 4
  • Actin-Related Protein T3 5

External Ids for ACTRT3 Gene

Previous GeneCards Identifiers for ACTRT3 Gene

  • GC03M169485
  • GC03M169487
  • GC03M169492
  • GC03M169497

Summaries for ACTRT3 Gene

GeneCards Summary for ACTRT3 Gene

ACTRT3 (Actin Related Protein T3) is a Protein Coding gene. An important paralog of this gene is ACTRT1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTRT3 Gene

Genomics for ACTRT3 Gene

Regulatory Elements for ACTRT3 Gene

Enhancers for ACTRT3 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ACTRT3 on UCSC Golden Path with GeneCards custom track

Promoters for ACTRT3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around ACTRT3 on UCSC Golden Path with GeneCards custom track

Genomic Location for ACTRT3 Gene

Chromosome:
3
Start:
169,766,921 bp from pter
End:
169,769,895 bp from pter
Size:
2,975 bases
Orientation:
Minus strand

Genomic View for ACTRT3 Gene

Genes around ACTRT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTRT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTRT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTRT3 Gene

Proteins for ACTRT3 Gene

  • Protein details for ACTRT3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYD9-ACTT3_HUMAN
    Recommended name:
    Actin-related protein T3
    Protein Accession:
    Q9BYD9
    Secondary Accessions:
    • Q96IS0
    • Q96NJ0

    Protein attributes for ACTRT3 Gene

    Size:
    372 amino acids
    Molecular mass:
    41008 Da
    Quaternary structure:
    • Interacts with PFN3.

neXtProt entry for ACTRT3 Gene

Proteomics data for ACTRT3 Gene at MOPED

Post-translational modifications for ACTRT3 Gene

No Post-translational modifications

Other Protein References for ACTRT3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ACTRT3 Gene

Domains & Families for ACTRT3 Gene

Protein Domains for ACTRT3 Gene

Suggested Antigen Peptide Sequences for ACTRT3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BYD9

UniProtKB/Swiss-Prot:

ACTT3_HUMAN :
  • Belongs to the actin family.
Family:
  • Belongs to the actin family.
genes like me logo Genes that share domains with ACTRT3: view

No data available for Gene Families for ACTRT3 Gene

Function for ACTRT3 Gene

genes like me logo Genes that share phenotypes with ACTRT3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ACTRT3 Gene

Localization for ACTRT3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ACTRT3 Gene

Cytoplasm, cytoskeleton. Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ACTRT3 Gene COMPARTMENTS Subcellular localization image for ACTRT3 gene
Compartment Confidence
cytoskeleton 3
cytosol 3
nucleus 3
plasma membrane 2
endoplasmic reticulum 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ACTRT3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with ACTRT3: view

Pathways & Interactions for ACTRT3 Gene

SuperPathways for ACTRT3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTRT3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTRT3 Gene

Drugs & Compounds for ACTRT3 Gene

No Compound Related Data Available

Transcripts for ACTRT3 Gene

mRNA/cDNA for ACTRT3 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(27) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTRT3 Gene

Actin-related protein T3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ACTRT3 Gene

No ASD Table

Relevant External Links for ACTRT3 Gene

GeneLoc Exon Structure for
ACTRT3
ECgene alternative splicing isoforms for
ACTRT3

Expression for ACTRT3 Gene

mRNA expression in normal human tissues for ACTRT3 Gene

mRNA differential expression in normal tissues according to GTEx for ACTRT3 Gene

This gene is overexpressed in Testis (x21.9).

Protein differential expression in normal tissues from HIPED for ACTRT3 Gene

This gene is overexpressed in Testis (50.1) and Ovary (18.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ACTRT3 Gene



SOURCE GeneReport for Unigene cluster for ACTRT3 Gene Hs.135411

mRNA Expression by UniProt/SwissProt for ACTRT3 Gene

Q9BYD9-ACTT3_HUMAN
Tissue specificity: Ubiquitously expressed.
genes like me logo Genes that share expression patterns with ACTRT3: view

Protein tissue co-expression partners for ACTRT3 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for ACTRT3 Gene

Orthologs for ACTRT3 Gene

This gene was present in the common ancestor of animals.

Orthologs for ACTRT3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ARPM1 35
  • 87.23 (n)
  • 81.52 (a)
ARPM1 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ACTRT3 35
  • 87.01 (n)
  • 83.6 (a)
ACTRT3 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Actrt3 35
  • 82.02 (n)
  • 79.4 (a)
Actrt3 16
Actrt3 36
  • 79 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ACTRT3 35
  • 99.55 (n)
  • 99.19 (a)
ARPM1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Actrt3 35
  • 80.86 (n)
  • 78.17 (a)
oppossum
(Monodelphis domestica)
Mammalia ACTRT3 36
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 34 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia ACTRT3 36
  • 58 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Arp53D 36
  • 44 (a)
OneToMany
Species with no ortholog for ACTRT3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ACTRT3 Gene

ENSEMBL:
Gene Tree for ACTRT3 (if available)
TreeFam:
Gene Tree for ACTRT3 (if available)

Paralogs for ACTRT3 Gene

genes like me logo Genes that share paralogs with ACTRT3: view

Variants for ACTRT3 Gene

Sequence variations from dbSNP and Humsavar for ACTRT3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
VAR_055483 -
rs1134063 -- 169,767,098(-) GGAAA(A/G)AAGGT utr-variant-3-prime
rs1134064 -- 169,767,062(-) TAGCA(A/G)AGGTA utr-variant-3-prime
rs1134840 -- 169,767,386(+) TGTGA(A/C/G/T)AGAAA utr-variant-3-prime
rs16854356 -- 169,767,303(+) CATTA(C/T)AGAAA utr-variant-3-prime

Variation tolerance for ACTRT3 Gene

Residual Variation Intolerance Score: 67% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.70; 66.11% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for ACTRT3 Gene

Disorders for ACTRT3 Gene

Relevant External Links for ACTRT3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACTRT3

No disorders were found for ACTRT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTRT3 Gene

Publications for ACTRT3 Gene

  1. Identification of two cDNAs for human actin-related proteins (Arps) that have remarkable similarity to conventional actin. (PMID: 11750065) Harata M. … Hatta S. (Biochim. Biophys. Acta 2001) 2 3 4 67
  2. Nuclear localization of profilin III-ArpM1 complex in mouse spermiogenesis. (PMID: 18692047) Hara Y. … Baba T. (FEBS Lett. 2008) 2 3
  3. Genome-wide association study identifies multiple loci associated with bladder cancer risk. (PMID: 24163127) Figueroa J.D. … Rothman N. (Hum. Mol. Genet. 2014) 3
  4. Identification of a melanoma susceptibility locus and somatic mutation in TET2. (PMID: 24980573) Song F. … Han J. (Carcinogenesis 2014) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for ACTRT3 Gene

Sources for ACTRT3 Gene

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