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Aliases for ACTRT2 Gene

Aliases for ACTRT2 Gene

  • Actin Related Protein T2 2 3 5
  • Actin-Related Protein M2 3 4
  • Arp-T2 3 4
  • ARPM2 3 4
  • Actin-Related Protein HArpM2 3
  • Actin-Related Protein T2 3
  • HARPM2 3
  • ARPT2 3

External Ids for ACTRT2 Gene

Previous GeneCards Identifiers for ACTRT2 Gene

  • GC01P002962
  • GC01P002233

Summaries for ACTRT2 Gene

Entrez Gene Summary for ACTRT2 Gene

  • The protein encoded by this intronless gene belongs to the actin family. Studies have shown that this protein may be involved in cytoskeletal organization similar to other cytoplasmic actin-related protein (ARP) subfamily members. Antibody raised against the human protein has been used to detect the protein by immunoblotting and immunofluorescence microscopy, demonstrating its specific synthesis in the testis, late in spermatid differentiation, and its localization in the calyx. [provided by RefSeq, Jul 2008]

GeneCards Summary for ACTRT2 Gene

ACTRT2 (Actin Related Protein T2) is a Protein Coding gene. An important paralog of this gene is ACTRT1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTRT2 Gene

Genomics for ACTRT2 Gene

Regulatory Elements for ACTRT2 Gene

Enhancers for ACTRT2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F002640 1.1 FANTOM5 Ensembl ENCODE 14.7 -378.9 -378948 3.2 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ELK1 ZNF207 SP3 MMEL1 ACTRT2 FAM213B MORN1 PANK4 GC01M002636 GC01P002648
GH01F003065 1.2 FANTOM5 ENCODE 12.2 +49.0 49021 9.4 PKNOX1 YBX1 ZNF48 GLIS2 ZNF143 ZNF416 ZNF548 ZNF263 REST CBX8 TP73-AS1 C1orf174 MORN1 ACTRT2 LOC100129534 SKI ENSG00000272153 PRDM16 LOC100420339 PIR58969
GH01F002968 0.6 ENCODE 12.2 -52.9 -52922 0.2 ELF3 ETV4 ACTRT2 GC01P002988 GC01P002897 PIR61730
GH01F003421 1.2 Ensembl ENCODE 12.1 +401.9 401875 3.0 MLX ZFP64 ARID4B DMAP1 ZNF2 ZNF48 SLC30A9 ZNF143 ZNF263 SP5 ACTRT2 GC01M003410 ARHGEF16
GH01F003274 2.1 VISTA 11.8 +253.0 252959 0.8 GLIS1 ACTRT2 LINC00982 PRDM16 GC01P003272 PIR53217 PIR57396
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ACTRT2 on UCSC Golden Path with GeneCards custom track

Genomic Location for ACTRT2 Gene

Chromosome:
1
Start:
3,021,482 bp from pter
End:
3,022,903 bp from pter
Size:
1,422 bases
Orientation:
Plus strand

Genomic View for ACTRT2 Gene

Genes around ACTRT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTRT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTRT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTRT2 Gene

Proteins for ACTRT2 Gene

  • Protein details for ACTRT2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TDY3-ACTT2_HUMAN
    Recommended name:
    Actin-related protein T2
    Protein Accession:
    Q8TDY3
    Secondary Accessions:
    • B1AN52
    • Q8NHS6
    • Q8TDG1

    Protein attributes for ACTRT2 Gene

    Size:
    377 amino acids
    Molecular mass:
    41702 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ACTRT2 Gene

Post-translational modifications for ACTRT2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ACTRT2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ACTRT2 Gene

Domains & Families for ACTRT2 Gene

Protein Domains for ACTRT2 Gene

Suggested Antigen Peptide Sequences for ACTRT2 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TDY3

UniProtKB/Swiss-Prot:

ACTT2_HUMAN :
  • Belongs to the actin family.
Family:
  • Belongs to the actin family.
genes like me logo Genes that share domains with ACTRT2: view

No data available for Gene Families for ACTRT2 Gene

Function for ACTRT2 Gene

genes like me logo Genes that share phenotypes with ACTRT2: view

Animal Model Products

miRNA for ACTRT2 Gene

miRTarBase miRNAs that target ACTRT2

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ACTRT2 Gene

Localization for ACTRT2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ACTRT2 Gene

Cytoplasm, cytoskeleton.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ACTRT2 Gene COMPARTMENTS Subcellular localization image for ACTRT2 gene
Compartment Confidence
cytoskeleton 3
cytosol 3
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for ACTRT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
genes like me logo Genes that share ontologies with ACTRT2: view

Pathways & Interactions for ACTRT2 Gene

SuperPathways for ACTRT2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTRT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTRT2 Gene

Transcripts for ACTRT2 Gene

mRNA/cDNA for ACTRT2 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(29) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTRT2 Gene

Actin-related protein T2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACTRT2 Gene

No ASD Table

Relevant External Links for ACTRT2 Gene

GeneLoc Exon Structure for
ACTRT2
ECgene alternative splicing isoforms for
ACTRT2

Expression for ACTRT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ACTRT2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ACTRT2 Gene

This gene is overexpressed in Testis (x52.6).

Protein differential expression in normal tissues from HIPED for ACTRT2 Gene

This gene is overexpressed in Ovary (39.4) and Testis (29.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ACTRT2 Gene



Protein tissue co-expression partners for ACTRT2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ACTRT2 Gene:

ACTRT2

SOURCE GeneReport for Unigene cluster for ACTRT2 Gene:

Hs.236635
genes like me logo Genes that share expression patterns with ACTRT2: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for ACTRT2 Gene

Orthologs for ACTRT2 Gene

This gene was present in the common ancestor of animals.

Orthologs for ACTRT2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ACTRT2 34 35
  • 99.29 (n)
dog
(Canis familiaris)
Mammalia ACTRT2 34 35
  • 84.97 (n)
cow
(Bos Taurus)
Mammalia ACTRT2 34 35
  • 83.91 (n)
mouse
(Mus musculus)
Mammalia Actrt2 34 16 35
  • 79.49 (n)
rat
(Rattus norvegicus)
Mammalia Actrt2 34
  • 78.87 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 76 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 65 (a)
OneToMany
chicken
(Gallus gallus)
Aves ACTRT2 34
  • 62.78 (n)
-- 35
  • 53 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 52 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia actb 34
  • 54.84 (n)
fruit fly
(Drosophila melanogaster)
Insecta Arp53D 35
  • 44 (a)
OneToMany
Species where no ortholog for ACTRT2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ACTRT2 Gene

ENSEMBL:
Gene Tree for ACTRT2 (if available)
TreeFam:
Gene Tree for ACTRT2 (if available)

Paralogs for ACTRT2 Gene

genes like me logo Genes that share paralogs with ACTRT2: view

Variants for ACTRT2 Gene

Sequence variations from dbSNP and Humsavar for ACTRT2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10492936 -- 3,020,306(+) TATGC(A/G)TCTGT upstream-variant-2KB
rs10752732 -- 3,019,916(+) CAGCG(C/T)CTGGG upstream-variant-2KB
rs10909862 -- 3,020,251(+) GTACC(A/G)CGCGT upstream-variant-2KB
rs113172212 -- 3,021,537(+) GGCTG(A/G)GGATG utr-variant-5-prime
rs113796232 -- 3,021,682(+) GGCTG(A/C/T)GGGCA utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ACTRT2 Gene

Variant ID Type Subtype PubMed ID
dgv11n100 CNV gain 25217958
esv3583359 CNV gain 25503493
esv3585036 CNV gain 21293372
esv3585037 CNV gain 21293372
nsv1013792 CNV gain 25217958
nsv428399 CNV gain 18775914
nsv470686 CNV loss 18288195
nsv545098 CNV loss 21841781
nsv829759 CNV loss 17160897
nsv951958 CNV deletion 24416366

Variation tolerance for ACTRT2 Gene

Residual Variation Intolerance Score: 48.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.62; 89.09% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ACTRT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTRT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ACTRT2 Gene

Disorders for ACTRT2 Gene

Relevant External Links for ACTRT2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACTRT2

No disorders were found for ACTRT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTRT2 Gene

Publications for ACTRT2 Gene

  1. Novel actin-related proteins Arp-T1 and Arp-T2 as components of the cytoskeletal calyx of the mammalian sperm head. (PMID: 12243744) Heid H.W. … Franke W.W. (Exp. Cell Res. 2002) 2 3 4 22 64
  2. Identification of two cDNAs for human actin-related proteins (Arps) that have remarkable similarity to conventional actin. (PMID: 11750065) Harata M. … Hatta S. (Biochim. Biophys. Acta 2001) 2 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3 64
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64

Products for ACTRT2 Gene

Sources for ACTRT2 Gene

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