ACTRT2 Gene
protein-coding GIFtS : 45
GCID: GC01 P002962
actin-related protein T2
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Aliasesfor ACTRT2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Actin-Related Protein T2 1 2 FLJ254241 ARPM21 2 3 5 HARPM22 Arp-T21 2 Actin-Related Protein HArpM22 Actin-Related Protein M22 3 ARP-T23 ARPT22 5
Export aliases for ACTRT2 gene to outside databases Previous GC identifer: GC01P002233
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Summariesfor ACTRT2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for ACTRT2 : The protein encoded by this intronless gene belongs to the actin family. Studies have shown that this protein may be involved in cytoskeletal organization similar to other cytoplasmic actin-related protein (ARP) subfamily members. Antibody raised against the human protein has been used to detect the protein by immunoblotting and immunofluorescence microscopy, demonstrating its specific synthesis in the testis, late in spermatid differentiation, and its localization in the calyx. (provided by RefSeq, Jul 2008)
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Genomic Viewsfor ACTRT2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_004350.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ACTRT2 gene promoter: Sox5 p300 Nkx2-2 Olf-1 IRF-1 AP-2gamma Roaz PPAR-alpha SRY Sox9 Other transcription factors Search SABiosciences Chromatin IP Primers for ACTRT2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ACTRT2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p36.32 Ensembl cytogenetic band: 1p36.32 HGNC cytogenetic band: 1p36.3 ACTRT2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P002962: view genomic region
(about GC identifiers )
Start:
2,938,046 bp from pter
End:
2,939,467 bp from pter
Size:
1,422 bases
Orientation:
plus strand
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Proteinsfor ACTRT2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ACTT2_HUMAN, Q8TDY3 (See
protein sequence )Recommended Name: Actin-related protein T2 Size : 377 amino acids; 41702 Da
Subcellular location : Cytoplasm, cytoskeleton (By similarity)
Secondary accessions : B1AN52 Q8NHS6 Q8TDG1Explore the universe of human proteins at neXtProt for ACTRT2: NX_Q8TDY3 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8TDY3 ACTRT2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_536356.3 ENSEMBL proteins: ENSP00000367658 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
ACTRT2 for ontologies About GeneDecksing ACTRT2 Antibody Products: Assay Products for ACTRT2:
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Protein
Domains / Familiesfor ACTRT2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ACTRT2 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8TDY3 ProtoNet protein and cluster: Q8TDY3
1 Blocks protein family : IPB004000 Actin/actin-like UniProtKB/Swiss-Prot: ACTT2_HUMAN, Q8TDY3 Similarity : Belongs to the actin family
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Functionfor ACTRT2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ACTRT2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ACTRT2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ACTRT2 (NM_080431 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ACTRT2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ACTRT2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ACTRT2
2 GenomeRNAi human phenotypes for ACTRT2 :
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Pathways & Interactionsfor ACTRT2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ACTRT2
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Drugs & Compoundsfor ACTRT2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for ACTRT2 Search CenterWatch for drugs/clinical trials and news about ACTRT2 / ACTT2
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Transcriptsfor ACTRT2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ACTRT2 gene: NM_080431.4 Unigene Cluster for ACTRT2:
Actin-related protein T2 Hs.236635 [show with all ESTs ] Unigene Representative Sequence: NM_080431 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000378404 (uc001ajz.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ACTRT2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ACTRT2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ACTRT2 (NM_080431 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ACTRT2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ACTRT2
Additional cDNA sequence: AB057364.1 AF440740.1 AK314500.1 BC029499.1
1 DOTS entry : DT.97838015
24/29 AceView cDNA sequences (see all 29 ):
AF440740 BP369024 NM_080431 AK058153 AB057364 AW016204 AL044118 BP371195 BI520482 BI827970 BI826376 BP370273 BI825639 AL044119 BP370015 AW003563 BM563549 BC029499 AI968198 BI825625 AI655275 BI463106 AA397903 BI460134 GeneLoc Exon Structure
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Expression for ACTRT2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ACTRT2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CAGCTGCTCC
About this image ACTRT2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See ACTRT2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ACTRT2 SOURCE GeneReport for Unigene cluster: Hs.236635 SABiosciences Custom PCR Arrays for ACTRT2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ACTRT2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat ACTRT2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ACTRT2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ACTRT2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ACTRT2
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Orthologsfor ACTRT2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for ACTRT2 gene from 7/26 species (see all 26 ) About this table
ENSEMBL Gene Tree for ACTRT2 (if available)TreeFam Gene Tree for ACTRT2 (if available)
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Paralogsfor ACTRT2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ACTRT2 gene ACTG2 2 ACTA2 2 ACTB 2 ACTR1A 2 ACTC1 2 ACTL9 2 ACTRT1 2 ACTG1 2 ACTL7A 2 ACTBL2 2 ACTL7B 2 ACTR1B 2 ACTA1 2 ACTRT3 2 18/28 SIMAP similar genes for ACTRT2 using alignment to 1 protein entry: ACTT2_HUMAN (see all similar genes ):ACTRT1 ACTRT3 ACTG1 ACTB ACTG2 PS1TP5BP1 ACTA2 ACTR1A ACTBL2 ACTC1 POTEF POTEI POTEJ ACTR1B POTEE POTEKP ACTL7B ACTL7A
ACTRT2 for paralogs About GeneDecksing
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Genomic Variantsfor ACTRT2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for ACTRT2 (2938046 - 2939467 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ACTRT2: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ACTRT2
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Disorders
/ Diseasesfor ACTRT2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ACTRT2 for disorders About GeneDecksing
OMIM gene information: 608535
OMIM disorders : --1 disease for ACTRT2 : About MalaCards malaria Export disorders for ACTRT2 gene to outside databases
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Publicationsfor ACTRT2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ACTRT2 gene integrated from 9 sources : (articles sorted by number of sources associating them with ACTRT2) Utopia : connect your pdf to the dynamic world of online information
Novel actin-related proteins Arp-T1 and Arp-T2 as components of the cytoskeletal calyx of the mammalian sperm head. (PubMed id 12243744) 1 , 2 , 3, 9 Heid H....Franke W. (2002) Identification of two cDNAs for human actin-related proteins (Arps) that have remarkable similarity to conventional actin. (PubMed id 11750065) 1 , 2 , 3 Harata M.... Hatta S. (2001) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 1 Barbe L....Andersson-Svahn H. (2008) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 2 Gregory S.G.... Bentley D.R. (2006) Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556) 1 Suzuki Y.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for ACTRT2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ACTRT2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing ACTRT2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing ACTRT2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for ACTRT2 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for ACTRT2 gene: Search GeneIP for patents involving ACTRT2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ACTRT2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for ACTRT2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ACTRT2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ACTRT2 OriGene Protein Over-expression Lysate for ACTRT2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ACTRT2 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ACTRT2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ACTRT2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for ACTRT2 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ACTRT2 OriGene Custom Protein Services for ACTRT2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ACTRT2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ACTRT2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ACTRT2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ACTRT2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ACTRT2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ACTRT2
Search Tocris compounds for ACTRT2
ACTRT2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ACTRT2
Search ThermoFisher Antibodies for ACTRT2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ACTRT2
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