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Aliases for ACTR3C Gene

Aliases for ACTR3C Gene

  • ARP3 Actin-Related Protein 3 Homolog C 2 3 5
  • Actin-Related Protein 11 3 4
  • Arp11 3 4
  • ARP3 Actin-Related Protein 3 Homolog C (Yeast) 2
  • Actin-Related Protein 3C 3
  • Actin-Related Arp11 3

External Ids for ACTR3C Gene

Previous GeneCards Identifiers for ACTR3C Gene

  • GC07M149577
  • GC07M143760
  • GC07M150243

Summaries for ACTR3C Gene

GeneCards Summary for ACTR3C Gene

ACTR3C (ARP3 Actin-Related Protein 3 Homolog C) is a Protein Coding gene. Diseases associated with ACTR3C include Lung Adenoma. GO annotations related to this gene include actin binding. An important paralog of this gene is ACTR3B.

UniProtKB/Swiss-Prot for ACTR3C Gene

  • May play a role in the suppression of metastatic potential in lung adenoma carcinoma cells.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTR3C Gene

Genomics for ACTR3C Gene

Regulatory Elements for ACTR3C Gene

Enhancers for ACTR3C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F150286 0.4 Ensembl 13.8 +37.3 37265 0.8 HDGF CTCF HDAC1 ZNF362 ZNF654 ARNT CEBPB TRIM22 ZNF384 ZNF501 ACTR3C RARRES2 GIMAP8 ZNF775 LOC105375564 GC07P150294 GC07M150192
GH07F150398 0.5 ENCODE 11.3 -80.4 -80441 11.2 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF767P ZNF777 ZNF862 ZNF775 LRRC61 REPIN1 LOC105375564 ABCB8 ACTR3C GIMAP8
GH07F150339 0.5 ENCODE 7.9 -17.3 -17281 2.9 ELF3 PKNOX1 ARID4B RAD21 RARA GLIS2 EGR1 FOS CREM EGR2 LRRC61 ACTR3C RARRES2 LOC105375560
GH07F150334 1 Ensembl ENCODE 6.3 -11.9 -11916 2.3 HLF FOXA3 CEBPB CEBPG RAD21 YY1 GLIS2 JUND SMARCA4 POLR2A ACTR3C LOC105375560 RARRES2
GH07F150375 0.9 Ensembl ENCODE 5 -57.3 -57343 11.7 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 FOS REPIN1 ENSG00000244151 ZNF767P ZNF862 ZNF777 ZBED6CL TMEM176A ACTR3C LOC105375564 GC07P150380
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ACTR3C on UCSC Golden Path with GeneCards custom track

Promoters for ACTR3C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000314668 225 1801 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for ACTR3C Gene

Chromosome:
7
Start:
149,887,178 bp from pter
End:
150,323,725 bp from pter
Size:
436,548 bases
Orientation:
Minus strand

Genomic View for ACTR3C Gene

Genes around ACTR3C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTR3C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTR3C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTR3C Gene

Proteins for ACTR3C Gene

  • Protein details for ACTR3C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C0K3-ARP3C_HUMAN
    Recommended name:
    Actin-related protein 3C
    Protein Accession:
    Q9C0K3
    Secondary Accessions:
    • Q5CZI4

    Protein attributes for ACTR3C Gene

    Size:
    210 amino acids
    Molecular mass:
    23712 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for ACTR3C Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ACTR3C Gene

Post-translational modifications for ACTR3C Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ACTR3C Gene

Domains & Families for ACTR3C Gene

Protein Domains for ACTR3C Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ACTR3C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9C0K3

UniProtKB/Swiss-Prot:

ARP3C_HUMAN :
  • Belongs to the actin family.
Family:
  • Belongs to the actin family.
genes like me logo Genes that share domains with ACTR3C: view

No data available for Gene Families for ACTR3C Gene

Function for ACTR3C Gene

Molecular function for ACTR3C Gene

UniProtKB/Swiss-Prot Function:
May play a role in the suppression of metastatic potential in lung adenoma carcinoma cells.

Gene Ontology (GO) - Molecular Function for ACTR3C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003779 actin binding IEA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with ACTR3C: view

Animal Model Products

miRNA for ACTR3C Gene

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ACTR3C Gene

Localization for ACTR3C Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ACTR3C Gene COMPARTMENTS Subcellular localization image for ACTR3C gene
Compartment Confidence
extracellular 5
cytoskeleton 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ACTR3C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005885 Arp2/3 protein complex IEA --
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with ACTR3C: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ACTR3C Gene

Pathways & Interactions for ACTR3C Gene

SuperPathways for ACTR3C Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTR3C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007015 actin filament organization IEA --
GO:0008150 biological_process ND --
GO:0034314 Arp2/3 complex-mediated actin nucleation IEA --
genes like me logo Genes that share ontologies with ACTR3C: view

No data available for Pathways by source and SIGNOR curated interactions for ACTR3C Gene

Transcripts for ACTR3C Gene

mRNA/cDNA for ACTR3C Gene

(14) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTR3C Gene

ARP3 actin-related protein 3 homolog C (yeast):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACTR3C Gene

No ASD Table

Relevant External Links for ACTR3C Gene

GeneLoc Exon Structure for
ACTR3C
ECgene alternative splicing isoforms for
ACTR3C

Expression for ACTR3C Gene

mRNA expression in normal human tissues for ACTR3C Gene

mRNA differential expression in normal tissues according to GTEx for ACTR3C Gene

This gene is overexpressed in Liver (x8.5).

Protein differential expression in normal tissues from HIPED for ACTR3C Gene

This gene is overexpressed in Skin (43.4) and Brain (25.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ACTR3C Gene



Protein tissue co-expression partners for ACTR3C Gene

NURSA nuclear receptor signaling pathways regulating expression of ACTR3C Gene:

ACTR3C

SOURCE GeneReport for Unigene cluster for ACTR3C Gene:

Hs.664579

mRNA Expression by UniProt/SwissProt for ACTR3C Gene:

Q9C0K3-ARP3C_HUMAN
Tissue specificity: Expressed in kidney, stomach, spleen, bone marrow, uterus, testis, placenta, skeletal muscle, mammary gland, lung, fetal liver, and fetal kidney, but not detected in small intestine, brain, and thymus. Expressed in low-metastatic lung adenocarcinoma cells but not in high-metastatic ones.
genes like me logo Genes that share expression patterns with ACTR3C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for ACTR3C Gene

Orthologs for ACTR3C Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ACTR3C Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 35
  • 45 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 45 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 44 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 35
  • 44 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 39 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii actr3b 35
  • 40 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Arp66B 35
  • 37 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea arx-1 35
  • 33 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ARP3 35
  • 28 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 46 (a)
OneToMany
Species where no ortholog for ACTR3C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ACTR3C Gene

ENSEMBL:
Gene Tree for ACTR3C (if available)
TreeFam:
Gene Tree for ACTR3C (if available)

Paralogs for ACTR3C Gene

Paralogs for ACTR3C Gene

genes like me logo Genes that share paralogs with ACTR3C: view

Variants for ACTR3C Gene

Sequence variations from dbSNP and Humsavar for ACTR3C Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10085485 -- 150,133,150(+) CAGGC(A/C)GCTCT intron-variant
rs10085681 -- 150,291,151(+) TTAGG(A/C)CGGGC intron-variant
rs10085692 -- 150,130,959(+) gcact(A/G)atttc intron-variant
rs10085754 -- 149,937,882(+) gatgg(A/G)aggtt intron-variant
rs10085773 -- 150,133,007(+) AAATT(A/C)ATTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ACTR3C Gene

Variant ID Type Subtype PubMed ID
dgv1336e214 CNV gain 21293372
dgv3695n106 OTHER inversion 24896259
dgv435n21 CNV loss 19592680
dgv6753n100 CNV loss 25217958
esv2759571 CNV gain 17122850
esv3615457 CNV gain 21293372
esv3615458 CNV loss 21293372
nsv1015582 CNV gain 25217958
nsv1034409 CNV gain 25217958
nsv1067934 OTHER inversion 25765185
nsv1074560 CNV deletion 25765185
nsv1074561 CNV deletion 25765185
nsv1078990 CNV insertion 25765185
nsv1119147 CNV deletion 24896259
nsv1151906 OTHER inversion 26484159
nsv472351 CNV novel sequence insertion 20440878
nsv508490 CNV deletion 20534489
nsv521407 CNV loss 19592680
nsv608990 CNV gain 21841781
nsv970966 CNV duplication 23825009
nsv981608 CNV duplication 23825009

Variation tolerance for ACTR3C Gene

Residual Variation Intolerance Score: 90.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.67; 78.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ACTR3C Gene

Human Gene Mutation Database (HGMD)
ACTR3C
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTR3C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ACTR3C Gene

Disorders for ACTR3C Gene

MalaCards: The human disease database

(1) MalaCards diseases for ACTR3C Gene - From: GeneCards

Disorder Aliases PubMed IDs
lung adenoma
  • adenoma of lung
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for ACTR3C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACTR3C
genes like me logo Genes that share disorders with ACTR3C: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ACTR3C Gene

Publications for ACTR3C Gene

  1. Isolation of a novel actin-related gene expressed in low-metastatic PC-14 human lung adenocarcinoma. (PMID: 11162478) Shindo-Okada N. … Shimizu K. (Biochem. Biophys. Res. Commun. 2001) 2 3 4 64
  2. Expression of the Arp11 gene suppresses the tumorigenicity of PC-14 human lung adenocarcinoma cells. (PMID: 14651955) Shindo-Okada N. … Iigo M. (Biochem. Biophys. Res. Commun. 2003) 2 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S. … Drake R.R. (Proteomics 2013) 3 64
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64

Products for ACTR3C Gene

Sources for ACTR3C Gene

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