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Aliases for ACTN1-AS1 Gene

Subcategory (RNA class) for ACTN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ACTN1-AS1 Gene

  • ACTN1 Antisense RNA 1 2 3 5
  • ACTN1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 14 Open Reading Frame 84 2
  • C14orf84 3

External Ids for ACTN1-AS1 Gene

Previous HGNC Symbols for ACTN1-AS1 Gene

  • C14orf84

Previous GeneCards Identifiers for ACTN1-AS1 Gene

  • GC14P069446

Summaries for ACTN1-AS1 Gene

GeneCards Summary for ACTN1-AS1 Gene

ACTN1-AS1 (ACTN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTN1-AS1 Gene

Genomics for ACTN1-AS1 Gene

Regulatory Elements for ACTN1-AS1 Gene

Enhancers for ACTN1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F068973 0.2 ENCODE 8.9 -1.2 -1175 9.8 PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 YY1 FOS ZNF263 SP3 ACTN1-AS1 ACTN1 GC14P068937
GH14F068961 1.1 FANTOM5 Ensembl ENCODE 8.9 -12.3 -12293 12.0 PKNOX1 ARID4B GLI4 ZNF48 YY1 GLIS2 FOS ZNF263 SP5 REST SLC39A9 ACTN1-AS1 HMGN1P3 DCAF5 ACTN1 GC14P068937
GH14F069287 1.3 Ensembl ENCODE 6.2 +308.2 308248 1.3 CTCF SMARCA4 TAL1 SMC3 TRIM24 ZIC2 RAD21 NR2F2 GALNT16 ACTN1-AS1 GC14M069298 ENSG00000258520
GH14F069007 0.9 Ensembl ENCODE 5.6 +28.9 28895 1.4 ZNF335 CTCF SCRT2 TRIM22 ZNF384 RAD21 ACTN1 ACTN1-AS1 RPS29P1
GH14F069012 1.4 FANTOM5 Ensembl ENCODE 5.6 +34.2 34219 3.0 ELF3 ARID4B SCRT2 EGR2 SP5 NFYC CEBPB REST GLIS1 ETV4 ACTN1-AS1 RPS29P1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ACTN1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ACTN1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000420048 -982 3401 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YY1 FOS ZNF263 SP3 SP5

Genomic Location for ACTN1-AS1 Gene

Chromosome:
14
Start:
68,979,682 bp from pter
End:
68,987,463 bp from pter
Size:
7,782 bases
Orientation:
Plus strand

Genomic View for ACTN1-AS1 Gene

Genes around ACTN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTN1-AS1 Gene

Proteins for ACTN1-AS1 Gene

Post-translational modifications for ACTN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTN1-AS1 Gene

Domains & Families for ACTN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACTN1-AS1 Gene

Function for ACTN1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTN1-AS1 Gene

Localization for ACTN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ACTN1-AS1 Gene

Pathways & Interactions for ACTN1-AS1 Gene

SuperPathways for ACTN1-AS1 Gene

No Data Available

Interacting Proteins for ACTN1-AS1 Gene

Gene Ontology (GO) - Biological Process for ACTN1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTN1-AS1 Gene

Transcripts for ACTN1-AS1 Gene

mRNA/cDNA for ACTN1-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTN1-AS1 Gene

ACTN1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ACTN1-AS1 Gene

No ASD Table

Relevant External Links for ACTN1-AS1 Gene

GeneLoc Exon Structure for
ACTN1-AS1
ECgene alternative splicing isoforms for
ACTN1-AS1

Expression for ACTN1-AS1 Gene

mRNA expression in normal human tissues for ACTN1-AS1 Gene

SOURCE GeneReport for Unigene cluster for ACTN1-AS1 Gene:

Hs.603341
genes like me logo Genes that share expression patterns with ACTN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ACTN1-AS1 Gene

Orthologs for ACTN1-AS1 Gene

Evolution for ACTN1-AS1 Gene

ENSEMBL:
Gene Tree for ACTN1-AS1 (if available)
TreeFam:
Gene Tree for ACTN1-AS1 (if available)

No data available for Orthologs for ACTN1-AS1 Gene

Paralogs for ACTN1-AS1 Gene

No data available for Paralogs for ACTN1-AS1 Gene

Variants for ACTN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACTN1-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs387907346 Pathogenic 68,978,963(-) AGAAG(A/C)AGCAG upstream-variant-2KB, reference, missense
rs1007407 -- 68,980,243(-) GCCTC(A/G)GTTTC intron-variant, upstream-variant-2KB
rs10139165 -- 68,986,909(+) CTTAA(C/G)ATTTG intron-variant
rs10220411 -- 68,985,371(+) CAATA(A/G)GTGTT intron-variant
rs1054199 -- 68,979,145(-) gccca(A/G)cccTA upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ACTN1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv832823 CNV loss 17160897

Relevant External Links for ACTN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTN1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ACTN1-AS1 Gene

Disorders for ACTN1-AS1 Gene

Relevant External Links for ACTN1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACTN1-AS1

No disorders were found for ACTN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTN1-AS1 Gene

Publications for ACTN1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for ACTN1-AS1 Gene

Sources for ACTN1-AS1 Gene

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