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Aliases for ACTL7B Gene

Aliases for ACTL7B Gene

  • Actin-Like 7B 2 3
  • Actin-Like-7-Beta 3 4
  • Actin-Like Protein 7B 3
  • Actin-Like 7-Beta 3
  • Tact1 3

External Ids for ACTL7B Gene

Previous GeneCards Identifiers for ACTL7B Gene

  • GC09M102415
  • GC09M103349
  • GC09M105074
  • GC09M106996
  • GC09M108696
  • GC09M110657
  • GC09M111616
  • GC09M081216

Summaries for ACTL7B Gene

Entrez Gene Summary for ACTL7B Gene

  • The protein encoded by this gene is a member of a family of actin-related proteins (ARPs) which share significant amino acid sequence identity to conventional actins. Both actins and ARPs have an actin fold, which is an ATP-binding cleft, as a common feature. The ARPs are involved in diverse cellular processes, including vesicular transport, spindle orientation, nuclear migration and chromatin remodeling. This gene (ACTL7B), and related gene, ACTL7A, are intronless, and are located approximately 4 kb apart in a head-to-head orientation within the familial dysautonomia candidate region on 9q31. Based on mutational analysis of the ACTL7B gene in patients with this disorder, it was concluded that it is unlikely to be involved in the pathogenesis of dysautonomia. Unlike ACTL7A, the ACTL7B gene is expressed predominantly in the testis, however, its exact function is not known. [provided by RefSeq, Jul 2008]

GeneCards Summary for ACTL7B Gene

ACTL7B (Actin-Like 7B) is a Protein Coding gene. Diseases associated with ACTL7B include hypertensive nephropathy. GO annotations related to this gene include structural constituent of cytoskeleton. An important paralog of this gene is ACTL10.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTL7B Gene

Genomics for ACTL7B Gene

Regulatory Elements for ACTL7B Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ACTL7B Gene

Start:
108,854,588 bp from pter
End:
108,856,967 bp from pter
Size:
2,380 bases
Orientation:
Minus strand

Genomic View for ACTL7B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ACTL7B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTL7B Gene

Proteins for ACTL7B Gene

  • Protein details for ACTL7B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y614-ACL7B_HUMAN
    Recommended name:
    Actin-like protein 7B
    Protein Accession:
    Q9Y614
    Secondary Accessions:
    • B2R9Q2
    • Q5JSV1

    Protein attributes for ACTL7B Gene

    Size:
    415 amino acids
    Molecular mass:
    45234 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ACTL7B Gene

Proteomics data for ACTL7B Gene at MOPED

Post-translational modifications for ACTL7B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ACTL7B Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for ACTL7B Gene

Domains for ACTL7B Gene

Protein Domains for ACTL7B Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ACTL7B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y614

UniProtKB/Swiss-Prot:

ACL7B_HUMAN :
  • Q9Y614
Family:
  • Belongs to the actin family.
genes like me logo Genes that share domains with ACTL7B: view

No data available for Gene Families for ACTL7B Gene

Function for ACTL7B Gene

Molecular function for ACTL7B Gene

GENATLAS Biochemistry: actin-like 7B,located in a "head to head" orientation with ACTL7A from the HSAN3 region,only detected in testis and to a lasser extent in prostate,mouse A2p7b ortholog,ARP actin-related proteins superfamily

Gene Ontology (GO) - Molecular Function for ACTL7B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005200 structural constituent of cytoskeleton TAS 10373328
genes like me logo Genes that share ontologies with ACTL7B: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ACTL7B

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ACTL7B Gene

Localization for ACTL7B Gene

Subcellular locations from UniProtKB/Swiss-Prot for ACTL7B Gene

Cytoplasm, cytoskeleton.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ACTL7B Gene COMPARTMENTS Subcellular localization image for ACTL7B gene
Compartment Confidence
cytoskeleton 4
cytosol 3
nucleus 2
plasma membrane 1

Gene Ontology (GO) - Cellular Components for ACTL7B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0015629 actin cytoskeleton TAS 10373328
genes like me logo Genes that share ontologies with ACTL7B: view

Pathways for ACTL7B Gene

SuperPathways for ACTL7B Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTL7B Gene

None

No data available for Pathways by source for ACTL7B Gene

Transcripts for ACTL7B Gene

mRNA/cDNA for ACTL7B Gene

(50) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTL7B Gene

Actin-like 7B:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ACTL7B

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACTL7B Gene

No ASD Table

Relevant External Links for ACTL7B Gene

GeneLoc Exon Structure for
ACTL7B
ECgene alternative splicing isoforms for
ACTL7B

Expression for ACTL7B Gene

mRNA expression in normal human tissues for ACTL7B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ACTL7B Gene

This gene is overexpressed in Testis (52.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for ACTL7B Gene

SOURCE GeneReport for Unigene cluster for ACTL7B Gene Hs.534390

mRNA Expression by UniProt/SwissProt for ACTL7B Gene

Q9Y614-ACL7B_HUMAN
Tissue specificity: Detected only in the testis and, to a lesser extent, in the prostate.
genes like me logo Genes that share expressions with ACTL7B: view

In Situ Assay Products

Orthologs for ACTL7B Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ACTL7B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ACTL7B 35
  • 99.04 (n)
  • 98.8 (a)
ACTL7B 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ACTL7B 35
  • 89.64 (n)
  • 89.4 (a)
ACTL7B 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ACTL7B 35
  • 82.6 (n)
  • 76.34 (a)
ACTL7B 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Actl7b 35
  • 85.02 (n)
  • 86.96 (a)
Actl7b 16
Actl7b 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ACTL7B 36
  • 80 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Actl7b 35
  • 85.83 (n)
  • 87.92 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.19566 35
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ARP2 36
  • 32 (a)
OneToMany
Species with no ortholog for ACTL7B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ACTL7B Gene

ENSEMBL:
Gene Tree for ACTL7B (if available)
TreeFam:
Gene Tree for ACTL7B (if available)

Paralogs for ACTL7B Gene

Paralogs for ACTL7B Gene

Selected SIMAP similar genes for ACTL7B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with ACTL7B: view

Variants for ACTL7B Gene

Sequence variations from dbSNP and Humsavar for ACTL7B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1054395 -- 108,854,644(-) CAGAT(C/G)GCCAC utr-variant-3-prime
rs3750466 -- 108,854,538(+) CCCCC(C/T)ACCCT downstream-variant-500B
rs3750467 -- 108,855,061(+) CCAAT(A/G)GTGAT synonymous-codon, reference
rs3750468 -- 108,855,883(+) CCAGG(A/G)TCACC reference, synonymous-codon
rs3750469 -- 108,856,029(+) CGGGA(C/T)TGTGA upstream-variant-2KB

Relevant External Links for ACTL7B Gene

HapMap Linkage Disequilibrium report
ACTL7B
Human Gene Mutation Database (HGMD)
ACTL7B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ACTL7B Gene

Disorders for ACTL7B Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for ACTL7B Gene including...

Search for ACTL7B Gene in MalaCards »

(1) University of Copenhagen DISEASES for ACTL7B Gene

Relevant External Links for ACTL7B

Human Genome Epidemiology (HuGE) Navigator
ACTL7B
genes like me logo Genes that share disorders with ACTL7B: view

No data available for UniProtKB/Swiss-Prot for ACTL7B Gene

Publications for ACTL7B Gene

  1. Cloning, mapping, and expression of two novel actin genes, actin- like-7A (ACTL7A) and actin-like-7B (ACTL7B), from the familial dysautonomia candidate region on 9q31. (PMID: 10373328) Chadwick B.P. … Slaugenhaupt S.A. (Genomics 1999) 2 3 4 23
  2. Methylation of CpG dinucleotides in the open reading frame of a testicular germ cell-specific intronless gene, Tact1/Actl7b, represses its expression in somatic cells. (PMID: 12907721) Hisano M. … Nozaki M. (Nucleic Acids Res. 2003) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for ACTL7B Gene

Sources for ACTL7B Gene

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