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Aliases for ACTL7A Gene

Aliases for ACTL7A Gene

  • Actin Like 7A 2 3 5
  • Actin-Like-7-Alpha 3 4
  • Testicular Secretory Protein Li 3 3
  • Actin-Like 7-Alpha 3
  • Actin-Like 7A 3

External Ids for ACTL7A Gene

Previous GeneCards Identifiers for ACTL7A Gene

  • GC09P102422
  • GC09P103356
  • GC09P105082
  • GC09P107004
  • GC09P108704
  • GC09P110664
  • GC09P111624
  • GC09P081224

Summaries for ACTL7A Gene

Entrez Gene Summary for ACTL7A Gene

  • The protein encoded by this gene is a member of a family of actin-related proteins (ARPs) which share significant amino acid sequence identity to conventional actins. Both actins and ARPs have an actin fold, which is an ATP-binding cleft, as a common feature. The ARPs are involved in diverse cellular processes, including vesicular transport, spindle orientation, nuclear migration and chromatin remodeling. This gene (ACTL7A), and related gene, ACTL7B, are intronless, and are located approximately 4 kb apart in a head-to-head orientation within the familial dysautonomia candidate region on 9q31. Based on mutational analysis of the ACTL7A gene in patients with this disorder, it was concluded that it is unlikely to be involved in the pathogenesis of dysautonomia. The ACTL7A gene is expressed in a wide variety of adult tissues, however, its exact function is not known. [provided by RefSeq, Jul 2008]

GeneCards Summary for ACTL7A Gene

ACTL7A (Actin Like 7A) is a Protein Coding gene. Diseases associated with ACTL7A include Dysautonomia and Hypertensive Nephropathy. GO annotations related to this gene include structural constituent of cytoskeleton. An important paralog of this gene is ACTRT1.

Gene Wiki entry for ACTL7A Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTL7A Gene

Genomics for ACTL7A Gene

Regulatory Elements for ACTL7A Gene

Enhancers for ACTL7A Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around ACTL7A on UCSC Golden Path with GeneCards custom track

Genomic Location for ACTL7A Gene

Chromosome:
9
Start:
108,862,228 bp from pter
End:
108,863,759 bp from pter
Size:
1,532 bases
Orientation:
Plus strand

Genomic View for ACTL7A Gene

Genes around ACTL7A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTL7A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTL7A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTL7A Gene

Proteins for ACTL7A Gene

  • Protein details for ACTL7A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y615-ACL7A_HUMAN
    Recommended name:
    Actin-like protein 7A
    Protein Accession:
    Q9Y615
    Secondary Accessions:
    • B2RC83
    • Q5JSV0

    Protein attributes for ACTL7A Gene

    Size:
    435 amino acids
    Molecular mass:
    48644 Da
    Quaternary structure:
    • Interacts (via N-terminus) with TES (via LIM domain 2). Heterodimer with TES; the heterodimer interacts with ENAH to form a heterotrimer.

    Three dimensional structures from OCA and Proteopedia for ACTL7A Gene

neXtProt entry for ACTL7A Gene

Proteomics data for ACTL7A Gene at MOPED

Post-translational modifications for ACTL7A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ACTL7A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ACTL7A Gene

Domains & Families for ACTL7A Gene

Protein Domains for ACTL7A Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ACTL7A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y615

UniProtKB/Swiss-Prot:

ACL7A_HUMAN :
  • Belongs to the actin family.
Family:
  • Belongs to the actin family.
genes like me logo Genes that share domains with ACTL7A: view

No data available for Gene Families for ACTL7A Gene

Function for ACTL7A Gene

Molecular function for ACTL7A Gene

GENATLAS Biochemistry:
actin-like 7A,isolated from the HSAN3 region,widely expressed,mouse Arp7a ortholog,ARP (actin related proteins) superfamily
genes like me logo Genes that share phenotypes with ACTL7A: view

Animal Model Products

miRNA for ACTL7A Gene

miRTarBase miRNAs that target ACTL7A

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ACTL7A Gene

Localization for ACTL7A Gene

Subcellular locations from UniProtKB/Swiss-Prot for ACTL7A Gene

Cytoplasm, cytoskeleton. Golgi apparatus. Cytoplasm. Nucleus. Note=Detected at the Golgi apparatus during acrosome biogenesis. Detected at the subacrosomal layer in round spermatids. Detected in sperm head and tail. {ECO:0000250 UniProtKB:Q9QY84}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ACTL7A Gene COMPARTMENTS Subcellular localization image for ACTL7A gene
Compartment Confidence
nucleus 5
cytoskeleton 4
cytosol 3
golgi apparatus 3
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for ACTL7A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001673 male germ cell nucleus IEA --
GO:0005737 cytoplasm IEA,ISS --
GO:0005856 cytoskeleton IEA --
GO:0031514 motile cilium IEA --
genes like me logo Genes that share ontologies with ACTL7A: view

Pathways & Interactions for ACTL7A Gene

SuperPathways for ACTL7A Gene

No Data Available

Gene Ontology (GO) - Biological Process for ACTL7A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTL7A Gene

Drugs & Compounds for ACTL7A Gene

No Compound Related Data Available

Transcripts for ACTL7A Gene

mRNA/cDNA for ACTL7A Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(33) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTL7A Gene

Actin-like 7A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ACTL7A Gene

No ASD Table

Relevant External Links for ACTL7A Gene

GeneLoc Exon Structure for
ACTL7A
ECgene alternative splicing isoforms for
ACTL7A

Expression for ACTL7A Gene

mRNA expression in normal human tissues for ACTL7A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ACTL7A Gene

This gene is overexpressed in Testis (x52.5).

Protein differential expression in normal tissues from HIPED for ACTL7A Gene

This gene is overexpressed in Testis (53.0) and Ovary (16.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ACTL7A Gene



SOURCE GeneReport for Unigene cluster for ACTL7A Gene Hs.123530

mRNA Expression by UniProt/SwissProt for ACTL7A Gene

Q9Y615-ACL7A_HUMAN
Tissue specificity: Strongly expressed in testis. Also expressed in other tissues.
genes like me logo Genes that share expression patterns with ACTL7A: view

Protein tissue co-expression partners for ACTL7A Gene

- Elite partner

Primer Products

Orthologs for ACTL7A Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ACTL7A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ACTL7A 35
  • 86.53 (n)
  • 87.3 (a)
ACTL7A 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ACTL7A 35
  • 87.28 (n)
  • 87.59 (a)
ACTL7A 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Actl7a 35
  • 83.98 (n)
  • 85.98 (a)
Actl7a 16
Actl7a 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ACTL7A 35
  • 99.08 (n)
  • 99.08 (a)
ACTL7A 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Actl7a 35
  • 84.67 (n)
  • 86.44 (a)
oppossum
(Monodelphis domestica)
Mammalia ACTL7A 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ACTL7A 36
  • 67 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii zgc:101810 36
  • 32 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ARP2 36
  • 30 (a)
OneToMany
Species with no ortholog for ACTL7A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ACTL7A Gene

ENSEMBL:
Gene Tree for ACTL7A (if available)
TreeFam:
Gene Tree for ACTL7A (if available)

Paralogs for ACTL7A Gene

(23) SIMAP similar genes for ACTL7A Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ACTL7A: view

Variants for ACTL7A Gene

Sequence variations from dbSNP and Humsavar for ACTL7A Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs7872077 - 108,863,340(+) AAACC(A/G)TGTCC reference, missense
VAR_031425 -
rs35995497 - 108,862,803(+) AGATC(A/C/G/T)CCCCG reference, missense
rs56031956 - 108,863,349(+) CCTGC(C/G)TTAAC reference, missense
rs1054744 -- 108,863,636(+) ACAGC(A/G)ACGAG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ACTL7A Gene

Variant ID Type Subtype PubMed ID
nsv6659 CNV Insertion 18451855

Variation tolerance for ACTL7A Gene

Residual Variation Intolerance Score: 55% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.88; 67.46% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for ACTL7A Gene

Disorders for ACTL7A Gene

MalaCards: The human disease database

(2) MalaCards diseases for ACTL7A Gene - From: GeneCards

Disorder Aliases PubMed IDs
dysautonomia
hypertensive nephropathy
  • nephropathy hypertensive
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for ACTL7A

Human Genome Epidemiology (HuGE) Navigator
ACTL7A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACTL7A
genes like me logo Genes that share disorders with ACTL7A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ACTL7A Gene

Publications for ACTL7A Gene

  1. Cloning, mapping, and expression of two novel actin genes, actin- like-7A (ACTL7A) and actin-like-7B (ACTL7B), from the familial dysautonomia candidate region on 9q31. (PMID: 10373328) Chadwick B.P. … Slaugenhaupt S.A. (Genomics 1999) 2 3 4 23 67
  2. Anti-ACTL7a antibodies: a cause of infertility. (PMID: 22386842) Fu J. … Wang L. (Fertil. Steril. 2012) 3
  3. Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study. (PMID: 21263130) Fletcher O. … Peto J. (J. Natl. Cancer Inst. 2011) 3
  4. Molecular recognition of the Tes LIM2-3 domains by the actin-related protein Arp7A. (PMID: 21278383) Boeda B. … Way M. (J. Biol. Chem. 2011) 3
  5. Proteomic characterization of the human sperm nucleus. (PMID: 21630459) de Mateo S. … Oliva R. (Proteomics 2011) 3

Products for ACTL7A Gene

Sources for ACTL7A Gene

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