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Aliases for ACTA2-AS1 Gene

Subcategory (RNA class) for ACTA2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ACTA2-AS1 Gene

  • ACTA2 Antisense RNA 1 2 3 5
  • Uc001kfo.1 3
  • ZXF1 3

External Ids for ACTA2-AS1 Gene

Previous GeneCards Identifiers for ACTA2-AS1 Gene

  • GC10P090693

Summaries for ACTA2-AS1 Gene

GeneCards Summary for ACTA2-AS1 Gene

ACTA2-AS1 (ACTA2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACTA2-AS1 Gene

Genomics for ACTA2-AS1 Gene

Regulatory Elements for ACTA2-AS1 Gene

Enhancers for ACTA2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F089217 0.8 Ensembl ENCODE 11.9 +285.4 285359 1.3 CTCF PKNOX1 RAD21 RFX5 GATA3 SCRT2 EED SMC3 CREM SCRT1 ACTA2-AS1 FAS IFIT5 GC10P089210 IFIT2
GH10F088837 0.4 FANTOM5 11.8 -94.5 -94539 0.4 ZNF263 ANKRD22 ACTA2-AS1 STAMBPL1 LIPM LIPF IFIT3 IFIT2 LIPN
GH10F089214 0.7 ENCODE 11.8 +283.1 283077 1.1 ACTA2-AS1 ACTA2 FAS LIPA GC10P089210 IFIT2
GH10F089216 0.2 ENCODE 11.8 +283.8 283839 0.1 MAFK ACTA2-AS1 FAS GC10P089210 IFIT2
GH10F089213 0.4 ENCODE 11.8 +281.0 281039 0.1 CTCF ZNF654 TRIM22 RAD21 YY1 ZFHX2 ZNF366 TARDBP ZNF143 SMC3 ACTA2-AS1 ACTA2 FAS GC10P089210 IFIT2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ACTA2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ACTA2-AS1 Gene

Chromosome:
10
Start:
88,932,390 bp from pter
End:
88,940,820 bp from pter
Size:
8,431 bases
Orientation:
Plus strand

Genomic View for ACTA2-AS1 Gene

Genes around ACTA2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACTA2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACTA2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACTA2-AS1 Gene

Proteins for ACTA2-AS1 Gene

Post-translational modifications for ACTA2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACTA2-AS1 Gene

Domains & Families for ACTA2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACTA2-AS1 Gene

Function for ACTA2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACTA2-AS1 Gene

Localization for ACTA2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ACTA2-AS1 Gene

Pathways & Interactions for ACTA2-AS1 Gene

SuperPathways for ACTA2-AS1 Gene

No Data Available

Interacting Proteins for ACTA2-AS1 Gene

Gene Ontology (GO) - Biological Process for ACTA2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACTA2-AS1 Gene

Transcripts for ACTA2-AS1 Gene

mRNA/cDNA for ACTA2-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ACTA2-AS1 Gene

ACTA2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ACTA2-AS1 Gene

No ASD Table

Relevant External Links for ACTA2-AS1 Gene

GeneLoc Exon Structure for
ACTA2-AS1
ECgene alternative splicing isoforms for
ACTA2-AS1

Expression for ACTA2-AS1 Gene

mRNA expression in normal human tissues for ACTA2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ACTA2-AS1 Gene

This gene is overexpressed in Artery - Tibial (x7.0), Artery - Coronary (x5.6), Artery - Aorta (x5.5), and Esophagus - Gastroesophageal Junction (x4.2).

SOURCE GeneReport for Unigene cluster for ACTA2-AS1 Gene:

Hs.713690
genes like me logo Genes that share expression patterns with ACTA2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ACTA2-AS1 Gene

Orthologs for ACTA2-AS1 Gene

Evolution for ACTA2-AS1 Gene

ENSEMBL:
Gene Tree for ACTA2-AS1 (if available)
TreeFam:
Gene Tree for ACTA2-AS1 (if available)

No data available for Orthologs for ACTA2-AS1 Gene

Paralogs for ACTA2-AS1 Gene

No data available for Paralogs for ACTA2-AS1 Gene

Variants for ACTA2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACTA2-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs121434527 Pathogenic 88,939,542(-) TTTCC(A/G)CTGCC nc-transcript-variant, reference, missense
rs121434528 Pathogenic 88,939,543(-) GTTTC(C/T)GCTGC nc-transcript-variant, reference, missense
rs397516685 Pathogenic 88,939,680(-) TGTCC(A/G)GGACA nc-transcript-variant, reference, missense
rs794728029 Pathogenic 88,938,242(-) TCCAG(A/G)GATGG nc-transcript-variant, reference, missense
rs727502878 Likely pathogenic 88,939,595(-) GAGAA(C/G)AGTTA nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ACTA2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3624139 CNV gain 21293372
esv3624143 CNV loss 21293372
esv3624144 CNV gain 21293372
nsv831942 CNV gain 17160897
nsv831943 CNV gain 17160897
nsv948130 CNV duplication 23825009

Relevant External Links for ACTA2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACTA2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ACTA2-AS1 Gene

Disorders for ACTA2-AS1 Gene

Relevant External Links for ACTA2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACTA2-AS1

No disorders were found for ACTA2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACTA2-AS1 Gene

Publications for ACTA2-AS1 Gene

  1. Enhanced expression of long non-coding RNA ZXF1 promoted the invasion and metastasis in lung adenocarcinoma. (PMID: 24721325) Zhang L. … Zhao J.P. (Biomed. Pharmacother. 2014) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for ACTA2-AS1 Gene

Sources for ACTA2-AS1 Gene

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