 |
 | Services
| |
 |
Aliases & Descriptions for ACTA1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ACTA 2, 3 | | ASMA 2, 5 | | Alpha-actin-1 3 | | CFTD 2 | | CFTD1 2, 5 | | CFTDM 2 | | MPFD 2 | | NEM1 2, 5 | | NEM2 2 | | NEM3 2, 5 | | OTTHUMP00000036123 2 |
| | | Descriptions |
|---|
| actin, alpha 1, skeletal muscle 2 | | alpha skeletal muscle actin 2 |
|
| | Search outside databases for aliases for ACTA1 genePrevious GC identifers: GC01M228014 GC01M225261 GC01M225966 GC01M226528 GC01M225873 |
Summaries for ACTA1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ACTA1: The product encoded by this gene belongs to the actin family of proteins, which are highly conserved proteins that play a role in cell motility, structure and integrity. Alpha, beta and gamma actin isoforms have been identified, with alpha actins being a major constituent of the contractile apparatus, while beta and gamma actins are involved in the regulation of cell motility. This actin is an alpha actin that is found in skeletal muscle. Mutations in this gene cause nemaline myopathy type 3, congenital myopathy with excess of thin myofilaments, congenital myopathy with cores, and congenital myopathy with fiber-type disproportion, diseases that lead to muscle fiber defects. [provided by RefSeq] UniProtKB/Swiss-Prot: ACTS_HUMAN, P68133Function: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cellsGene Wiki entry for ACTA1 (Actin%2C_alpha_1) |
Genomic Location for ACTA1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ACTA1 gene 
Entrez Gene cytogenetic band: 1q42.13 Ensembl cytogenetic band: 1q42.13 HGNC cytogenetic band: 1q42.13ACTA1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M227633:
(about GC identifiers)
Start:
|
227,633,615 bp from pter |
End:
|
227,636,468 bp from pter |
Size:
|
2,854 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004559.13
| Proteins for ACTA1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ACTS_HUMAN, P68133 (See
protein sequence)Recommended Name: Actin, alpha skeletal muscle Size: 377 amino acids; 42051 Da
Subunit: Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to 4 others. Interacts with TTID
Subcellular location: Cytoplasm, cytoskeleton
Miscellaneous: In vertebrates 3 main groups of actin isoforms, alpha, beta and gamma have been identified. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton and as mediators of internal cell motility
Secondary accessions: P02568 P99020Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001091.1
ENSEMBL proteins: ENSP00000355645 ENSP00000355643 ENSP00000355644 ENSP00000344142 ENSP00000312351
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ACTA1: Assays for ACTA1: | Protein
Domains/ Families for ACTA1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P68133
ProtoNet protein and cluster: P68133 UniProtKB/Swiss-Prot: ACTS_HUMAN, P68133Similarity: Belongs to the actin family | Gene Function for ACTA1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001100
Applied Biosystems Silencer® siRNAs for ACTA1
Sigma-Aldrich siRNA for ACTA1  Sigma-Aldrich shRNA Panels and shRNA for ACTA1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001100                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001100                                  untagged cDNA clone in CMV expression vector: NM_001100 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001100
UniProtKB/Swiss-Prot: ACTS_HUMAN, P68133Function: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cellsGenatlas biochemistry entry for ACTA1:actin,alpha 1,skeletal and smooth muscle major constituent of thin filaments6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Acta1):
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
): About this table | Pathways & Interactions for ACTA1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/16 Sigma-Aldrich "Your Favorite Gene" Pathways for ACTA1 (Your Favorite Gene powered by Ingenuity) (see all 16
) 
Gene Network CentralTM Interacting Genes and Proteins Network for ACTA1 
5/151 Interacting proteins for ACTA1 (ENSP000003556453 P681332) via UniProtKB, MINT, and/or STRING (see all 151
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ACTA1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Compounds for ACTA1 available from Tocris Bioscience About this table
8 Novoseek chemical compound relationships for ACTA1 gene
About this table
|
Transcripts for ACTA1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001100
Sigma-Aldrich siRNA for ACTA1  Sigma-Aldrich shRNA Panels and shRNA for ACTA1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001100 REFSEQ mRNAs for ACTA1 gene: NM_001100.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001100               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001100                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001100                                  untagged cDNA clone in CMV expression vector: NM_001100  Additional cDNA sequence: AK096902.1 AK300697.1 AY280960.1 BC012597.1 BX648545.1 CR536516.1 CR541796.1 J00068.1 24/51 DOTS entries (see all 51
): DT.102841501 DT.454774 DT.95093239 DT.95313403 DT.91890162 DT.95181315 DT.121372759 DT.91850128 DT.95313393 DT.102841506 DT.121372761 DT.91758479 DT.95340176 DT.100795516 DT.100868813 DT.100870207 DT.102841497 DT.121372744 DT.121372751 DT.85102679 DT.92033969 DT.98084087 DT.100640118 DT.100750299 24/807 AceView cDNA sequences (see all 807
):F17669 AA180783 F17682 AJ711290 F17003 F37407 F15530 F16637 F16625 F16564 AA346188 AA194787 AA310566 W68315 BX500383 F18677 F27026 F25489 CR541796 AA211587 AA346182 F35268 AA194516 F16141
highest scoring ESTs for ACTA1:AA100079 AA100513 AA176533 AA180828 AA180841 AA192432 AA192544 AA192835 AA193029 AA193159 Unigene Cluster for ACTA1: Actin, alpha 1, skeletal muscle Hs.1288 [show with all ESTs]Unigene Representative Sequence: BC012597
GeneLoc Exon Structure
5 Ensembl transcripts including schematic representations: ENST00000366684
ENST00000366682
ENST00000366683
ENST00000342787
ENST00000308794
|
Expression for ACTA1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ACTA1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ACTA1
1 / 2 / 3 4 probe-sets matching ACTA1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AAGATCAAGA
SOURCE GeneReport for Unigene cluster: Hs.1288
Expression variation in blood from EXPOLDB for ACTA1 |
Orthologs for ACTA1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ACTA1 gene from 5/14 species (see all 14
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
ACTA11 |
-- |
actin, alpha 1, skeletal muscle |
86.1(n) 93.32(a) |
403580 XM_845524.1 XP_850617.1 |
cow (Bos taurus) |
ACTA11 |
-- |
actin, alpha 1, skeletal muscle |
93.81(n) 99.73(a) |
281592 NM_174225.1 NP_776650.1 |
rat (Rattus norvegicus) |
Acta11 |
-- |
actin, alpha 1, skeletal muscle |
90.63(n) 100(a) |
29437 NM_019212.2 NP_062085.1 |
mouse (Mus musculus) |
Acta11, 5 |
8 (67.00 cM)5
|
actin, alpha 1, skeletal muscle1, 5 |
90.89(n)1 100(a)1 |
114591 NM_009606.21 NP_033736.11 AA9599435 AK0279195 (see all 12) |
chicken (Gallus gallus) |
ACTA11 |
-- |
actin, alpha 1, skeletal muscle |
88.51(n) 100(a) |
421534 NM_001031063.1 NP_001026234.1 |
About this table Species with no ortholog for ACTA1
ENSEMBL Gene Tree for ACTA1 | Paralogs for ACTA1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for ACTA1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ACTA1 (up to first 250kb)
|
Disorders & Mutations for ACTA1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 102610 UniProtKB/Swiss-Prot: ACTS_HUMAN, P68133
Defects in ACTA1 are the cause of nemaline myopathy type 3 (NEM3) [MIM:161800]. Nemaline myopathy (NEM) is a form of congenital myopathy characterized by abnormal thread- or rod-like structures in muscle fibers on histologic examination. The clinical phenotype is highly variable, with differing age at onset and severity Defects in ACTA1 are a cause of congenital myopathy with excess of thin myofilaments (CM) [MIM:102610] Defects in ACTA1 are a cause of congenital myopathy with fiber-type disproportion (CFTD) [MIM:255310]; also known as congenital fiber-type disproportion myopathy (CFTDM). CFTD is a genetically heterogeneous disorder in which there is relative hypotrophy of type 1 muscle fibers compared to type 2 fibers on skeletal muscle biopsy. However, these findings are not specific and can be found in many different myopathic and neuropathic conditions10/12 Novoseek disease relationships for ACTA1 gene (see all 12
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| myopathies nemaline |
95.46 |
60 |
16945536 (3), 11166164 (3), 16288873 (2), 15336686 (2) (see all 28) |
| congenital fiber type disproportion |
89.93 |
3 |
15468086 (1), 17387733 (1) |
| myopathy, congenital |
89.63 |
15 |
18976909 (2), 15520409 (1), 12921789 (1), 17885449 (1) (see all 7) |
| scar1 |
75.54 |
2 |
11029465 (2) |
| myopathy |
72.39 |
29 |
10508519 (2), 15221331 (2), 15072110 (2), 15226407 (2) (see all 13) |
| listeriosis |
51.81 |
1 |
9284184 (1) |
| neuromuscular diseases |
23.14 |
1 |
15236405 (1) |
| respiratory failure |
21.01 |
1 |
15468086 (1) |
| hypertrophy |
1.26 |
1 |
10764782 (1) |
| tumors |
1.14 |
2 |
16837618 (1) |
About this table
GeneTests: ACTA1 Nemaline Myopathy Human Gene Mutation Database: ACTA1 Genetic Association Database: ACTA1 Human Genome Epidemiology Navigator: ACTA1 (2 documents)
|
Medical News for ACTA1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ACTA1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/305 PubMed articles for ACTA1 gene (see all 305
):- Mild phenotype of nemaline myopathy with sleep hypoventilation due to a mutation in the skeletal muscle alpha-actin (ACTA1) gene. (PubMed id 11166164)1, 3, 4 Jungbluth H.... Muntoni F. (2001)
- Nemaline myopathy caused by mutations in the muscle alpha-skeletal- actin gene. (PubMed id 11333380)1, 3, 4 Ilkovski B.... North K.N. (2001)
- Actin mutations are one cause of congenital fibre type disproportion. (PubMed id 15468086)1, 3, 4 Laing N.G.... Nonaka I. (2004)
- Mutations in the skeletal muscle alpha-actin gene in patients with actin myopathy and nemaline myopathy. (PubMed id 10508519)1, 3, 4 Nowak K.J.... North K.N. (1999)
- Assignment of the human skeletal muscle [FC12]a-actin gene (ACTA1) to chromosome 1q42.13-->q42.2 by radiation hybrid mapping. (PubMed id 10072583)1, 2, 3 Mogensen J....Borglum A.D. (1998)
- Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. (PubMed id 16916647)3, 4 Kim S.C.... Zhao Y. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- ACT and UCH-L1 polymorphisms in Parkinson's disease and age of onset. (PubMed id 12210873)3, 6 Wang J....Yu L. (2002)
- Potential genetic markers of sporadic Alzheimer's dementia. (PubMed id 11702052)3, 6 Retz W....Rosler M. (2001)
- Myotilin is mutated in limb girdle muscular dystrophy 1A. (PubMed id 10958653)3, 4 Hauser M.A.... Speer M.C. (2000)
|
Search for ACTA1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ACTA1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ACTA1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ACTA1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=ACTA1 |
|
| | | About This Section
| --
| Services for ACTA1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ACTA1:

 | |
 | | | | |
|
 |  |  |
| | | | Tocris compounds for ACTA1 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
|