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Aliases for ACSM6 Gene

Aliases for ACSM6 Gene

  • Acyl-CoA Synthetase Medium-Chain Family Member 6 2 3 4
  • EC 6.2.1.2 4 63
  • C10orf129 3 4
  • Chromosome 10 Open Reading Frame 129 2
  • AMP-Binding Enzyme 3
  • BA310E22.3 3
  • EC 6.2.1 63

External Ids for ACSM6 Gene

Previous HGNC Symbols for ACSM6 Gene

  • C10orf129

Summaries for ACSM6 Gene

GeneCards Summary for ACSM6 Gene

ACSM6 (Acyl-CoA Synthetase Medium-Chain Family Member 6) is a Protein Coding gene. Among its related pathways are fatty acid beta-oxidation (peroxisome). GO annotations related to this gene include GTP binding and butyrate-CoA ligase activity. An important paralog of this gene is ACSM2B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACSM6 Gene

Genomics for ACSM6 Gene

Genomic Location for ACSM6 Gene

Chromosome:
10
Start:
95,194,200 bp from pter
End:
95,228,929 bp from pter
Size:
34,730 bases
Orientation:
Plus strand

Genomic View for ACSM6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ACSM6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACSM6 Gene

No data available for Regulatory Elements for ACSM6 Gene

Proteins for ACSM6 Gene

  • Protein details for ACSM6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P461-ACSM6_HUMAN
    Recommended name:
    Acyl-coenzyme A synthetase ACSM6, mitochondrial
    Protein Accession:
    Q6P461
    Secondary Accessions:
    • A4FU95
    • A4IF38
    • Q5VZX2
    • Q6ZTX1

    Protein attributes for ACSM6 Gene

    Size:
    480 amino acids
    Molecular mass:
    53585 Da
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
    Quaternary structure:
    • Monomer.
    SequenceCaution:
    • Sequence=AAI04211.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI04212.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI12989.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAH72344.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for ACSM6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ACSM6 Gene

Proteomics data for ACSM6 Gene at MOPED

Selected DME Specific Peptides for ACSM6 Gene

Post-translational modifications for ACSM6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ACSM6 Gene

Domains & Families for ACSM6 Gene

Protein Domains for ACSM6 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for ACSM6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6P461

UniProtKB/Swiss-Prot:

ACSM6_HUMAN :
  • Belongs to the ATP-dependent AMP-binding enzyme family.
Family:
  • Belongs to the ATP-dependent AMP-binding enzyme family.
genes like me logo Genes that share domains with ACSM6: view

No data available for Gene Families for ACSM6 Gene

Function for ACSM6 Gene

Molecular function for ACSM6 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + a carboxylate + CoA = AMP + diphosphate + an acyl-CoA

Enzyme Numbers (IUBMB) for ACSM6 Gene

Gene Ontology (GO) - Molecular Function for ACSM6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003824 catalytic activity --
GO:0005524 ATP binding IEA --
GO:0005525 GTP binding IEA --
GO:0046872 metal ion binding IEA --
GO:0047760 butyrate-CoA ligase activity IEA --
genes like me logo Genes that share ontologies with ACSM6: view

Phenotypes for ACSM6 Gene

GenomeRNAi human phenotypes for ACSM6:
genes like me logo Genes that share phenotypes with ACSM6: view

No data available for Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACSM6 Gene

Localization for ACSM6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ACSM6 Gene

Mitochondrion.

Gene Ontology (GO) - Cellular Components for ACSM6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with ACSM6: view

No data available for Subcellular locations from COMPARTMENTS for ACSM6 Gene

Pathways & Interactions for ACSM6 Gene

genes like me logo Genes that share pathways with ACSM6: view

Pathways by source for ACSM6 Gene

Interacting Proteins for ACSM6 Gene

Gene Ontology (GO) - Biological Process for ACSM6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006631 fatty acid metabolic process IEA --
GO:0008152 metabolic process --
GO:0031647 regulation of protein stability IMP 24270810
GO:1903955 positive regulation of protein targeting to mitochondrion IMP 24270810
genes like me logo Genes that share ontologies with ACSM6: view

No data available for SIGNOR curated interactions for ACSM6 Gene

Drugs & Compounds for ACSM6 Gene

(11) Drugs for ACSM6 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Adenosine monophosphate Approved Nutra 0
Adenosine triphosphate Approved Nutra 0
butyric acid Experimental Pharma Full agonist, Agonist 10
Diphosphate Experimental Pharma 0
Guanosine triphosphate Experimental Pharma 0

(34) Additional Compounds for ACSM6 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
(2E)-Decenoyl-CoA
  • (E)-S-2-decenoate
  • (E)-S-2-decenoate CoA
  • (E)-S-2-decenoate Coenzyme A
  • (E)-S-2-decenoic acid
  • 2-trans-Decenoyl-CoA
10018-95-8
(2E)-Dodecenoyl-CoA
  • (2E)-Dodec-2-enoyl-CoA
  • (2E)-Dodec-2-enoyl-Coenzyme A
  • 2-trans-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
1066-12-2
(2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-Coenzyme A
  • trans-2-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-Coenzyme A
4460-95-1
(2E)-Octenoyl-CoA
  • (E)-S-2-octenoate
  • (E)-S-2-octenoate CoA
  • (E)-S-2-octenoate Coenzyme A
  • (E)-S-2-octenoic acid
  • 2,3-trans-Octenoyl coenzyme A
10018-94-7
(2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-Coenzyme A
  • Trans-tetra-dec-2-enoyl-CoA
  • Trans-tetra-dec-2-enoyl-CoA.
  • Trans-tetra-dec-2-enoyl-Coenzyme A
38795-33-4
genes like me logo Genes that share compounds with ACSM6: view

Transcripts for ACSM6 Gene

mRNA/cDNA for ACSM6 Gene

(2) REFSEQ mRNAs :
(7) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ACSM6 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11
SP1:
SP2: - -
SP3: -

Relevant External Links for ACSM6 Gene

GeneLoc Exon Structure for
ACSM6
ECgene alternative splicing isoforms for
ACSM6

Expression for ACSM6 Gene

mRNA expression in normal human tissues for ACSM6 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for ACSM6 Gene



genes like me logo Genes that share expression patterns with ACSM6: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for ACSM6 Gene

Orthologs for ACSM6 Gene

This gene was present in the common ancestor of animals.

Orthologs for ACSM6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10H10orf129 35
  • 99.24 (n)
  • 98.12 (a)
C10orf129 36
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C10orf129 36
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 37 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG11391 36
  • 15 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea acs-16 36
  • 13 (a)
OneToMany
Species with no ortholog for ACSM6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for ACSM6 Gene

ENSEMBL:
Gene Tree for ACSM6 (if available)
TreeFam:
Gene Tree for ACSM6 (if available)

Paralogs for ACSM6 Gene

Paralogs for ACSM6 Gene

(7) SIMAP similar genes for ACSM6 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for ACSM6 Gene

genes like me logo Genes that share paralogs with ACSM6: view

Variants for ACSM6 Gene

Sequence variations from dbSNP and Humsavar for ACSM6 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs16872 -- 95,210,604(-) GGTTC(A/G/T)CTGAT intron-variant
rs483239 -- 95,229,346(+) cacct(C/T)gtgac downstream-variant-500B
rs489807 -- 95,225,441(-) CACTA(C/T)GATTA intron-variant, missense, reference
rs507728 -- 95,221,377(-) actct(A/T)gacct intron-variant
rs509736 -- 95,221,630(+) tagac(A/C)actta intron-variant

Variation tolerance for ACSM6 Gene

Gene Damage Index Score: 5.81; 73.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ACSM6 Gene

HapMap Linkage Disequilibrium report
ACSM6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for ACSM6 Gene

Disorders for ACSM6 Gene

Relevant External Links for ACSM6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACSM6
genes like me logo Genes that share disorders with ACSM6: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACSM6 Gene

Publications for ACSM6 Gene

  1. An integrated clinico-metabolomic model improves prediction of death in sepsis. (PMID: 23884467) Langley R.J. … Kingsmore S.F. (Sci Transl Med 2013) 2 67
  2. High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy. (PMID: 24270810) Hasson S.A. … Youle R.J. (Nature 2013) 67
  3. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 67
  4. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 67
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67

Products for ACSM6 Gene

Sources for ACSM6 Gene

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