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Aliases & Descriptions for ACP5
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.1.3.2 3 MGC117378 2 TR-AP 3 TRAP 2 TrATPase 2 , 3
Descriptions Tartrate-resistant acid ATPase 2 , 3 acid phosphatase 5, tartrate resistant 2 , 3 tartrate resistant acid phosphatase 5 2
Search outside databases for aliases for ACP5 genePrevious GC identifers: GC19M011816 GC19M011909 GC19M011530
Summaries for ACP5 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ACP5 : This gene encodes an iron containing glycoprotein which catalyzes the conversion of orthophosphoricmonoester to alcohol and orthophosphate. It is the most basic of the acid phosphatases and is theonly form not inhibited by L(+)-tartrate. [provided by RefSeq] Gene Wiki entry for ACP5 (Tartrate-resistant_acid_phosphatase)
Genomic Location for ACP5
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ACP5 gene Entrez Gene cytogenetic band: 19p13.3-p13.2 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13.3-p13.2 ACP5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M011546:
(about GC identifiers )
Start:
11,546,477 bp from pter
End:
11,550,766 bp from pter
Size:
4,290 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000019.8 NT_011295.10 Proteins for ACP5
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PPA5_HUMAN, P13686 (See
protein sequence )Recommended Name: Tartrate-resistant acid phosphatase type 5 precursor Size : 325 amino acids; 36599 Da
Cofactor : Binds 2 iron ions per subunit
Subunit : Exists either as monomer or, after proteolytic processing, as a dimer of two chains linkedby disulfide bond(s)
Subcellular location : Lysosome
PDB structure from and Proteopedia : 1WAR (3D)
 2BQ8 (3D)
 
Secondary accessions : A8K3V2 Q2TAB1 Q6IAS6 Q9UCJ5 Q9UCJ6 Q9UCJ7
REFSEQ proteins (4 alternative transcripts):
NP_001104504.1 NP_001104505.1 NP_001104506.1 NP_001602.1 ENSEMBL proteins: ENSP00000218758 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ACP5 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ACP5: Assays for ACP5:
Protein
Domains/ Families for ACP5(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P13686 ProtoNet protein and cluster: P13686
UniProtKB/Swiss-Prot: PPA5_HUMAN, P13686 Similarity : Belongs to the metallophosphoesterase superfamily. Purple acid phosphatase family
Gene Function for ACP5
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001111034 Applied Biosystems Silencer ® siRNAs for ACP5 Sigma-Aldrich siRNA and siRNA Panels for ACP5 Sigma-Aldrich shRNA Panels and shRNA for ACP5 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111034                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111034                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001111034  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001611 UniProtKB/Swiss-Prot: PPA5_HUMAN, P13686 Catalytic activity : A phosphate monoester + H(2)O = an alcohol + phosphateEnzyme Number (IUBMB): EC 3.1.3.2
Genatlas biochemistry entry for ACP5 :phosphatase acid,tartrate resistant
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Acp5) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for ACP5
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for ACP5 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for ACP5 5/26 Interacting proteins for ACP5 (ENSP00000218758 3 P13686 2 ) via UniProtKB, MINT, and/or STRING (see all 26
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0034097 response to cytokine stimulus
IEA --
About this table
Drugs & Compounds for ACP5 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ACP5 10/25 Novoseek chemical compound relationships for ACP5 gene (see all 25
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
deoxypyridinoline
71.28
23
8911707 (3), 8352070 (3), 18256306 (2), 9580479 (1) (see all 11 )
pyridinoline
66.66
19
8352070 (3), 7785468 (2), 9580479 (1), 12525759 (1) (see all 8 )
hydroxyproline
58.04
23
7561234 (2), 8304043 (2), 7785468 (2), 7799895 (2) (see all 14 )
1,25 dihydroxy vitamin d3
49.37
1
2323362 (1)
procollagen
49.01
5
10354264 (1), 15252851 (1), 8879839 (1)
hydroxyapatite
35.81
4
11336305 (2), 9878526 (1)
toluidine
32.36
3
15293474 (1), 18773818 (1)
molybdate
28.43
2
8889844 (1), 8127141 (1)
calcium
24.34
32
7516333 (5), 7561234 (2), 9333133 (2), 14606707 (2) (see all 15 )
nitroblue tetrazolium
17.56
2
1693566 (2)
About this table
Transcripts for ACP5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_001111034 Sigma-Aldrich siRNA and siRNA Panels for ACP5 Sigma-Aldrich shRNA Panels and shRNA for ACP5 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001111034 NM_001111035 NM_001111036 NM_001611
REFSEQ mRNAs for ACP5 gene (4 alternative transcripts): NM_001111034.1 NM_001111035.1 NM_001111036.1 NM_001611.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001111034 NM_001111035 NM_001111036 NM_001611
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111034                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 4 ): NM_001111034                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001111034  
Additional cDNA sequence: AK225912.1 AK290717.1 AK307164.1 BC025414.2 BC111014.1 CR457078.1 CR602962.1 CR615022.1 CR616016.1 CR617566.1 CR618497.1 CR624625.1 J04430.1 X14618.1
20 DOTS entries : DT.100709596 DT.100813137 DT.453685 DT.95152222 DT.100813140 DT.100029488 DT.121462889 DT.100813139 DT.95196730 DT.100834376 DT.121462939 DT.121462950 DT.91731286 DT.121462876 DT.121463016 DT.121463190 DT.121629898 DT.40248088 DT.91731291 DT.95088531
24/214 AceView cDNA sequences (see all 214
):CB529122 BU732014 BM686163 BU632205 CD370690 CD367224 CD370009 BQ683467 CA436118 CA308313 BI820158 BX378750 CA430104 BG761938 BX399056 NM_001611 BC025414 BQ445828 BU189620 CR602962 BM662527 AV646064 CA435155 BM992573
highest scoring ESTs for ACP5 :J04430 BC025414 BE277003 BF974850 BG547651 BG760210 BG761938 BG762357 BG766939 BG769534
Unigene Cluster for ACP5: Acid phosphatase 5, tartrate resistant Hs.1211 [show with all ESTs ] Unigene Representative Sequence: BM804974 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for ACP5 (see all 8
) ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d ^ 6a · 6b · 6c · 6d ^ 7 SP1 :         -   -   -   -     -                         SP2 :         -     -   -     -                         SP3 :             -   -     -                         SP4 :         -   -   -   -     -                         SP5 :         -       -     -                        
About this scheme ECgene alternative splicing isoforms for ACP5 1 Ensembl transcript including schematic representation : ENST00000218758
Expression for ACP5
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ACP5 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ACP5 1 / 2 / 3
3 probe-sets matching ACP5 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TGTCCCAGCCSOURCE GeneReport for Unigene cluster: Hs.1211 Expression variation in blood from EXPOLDB for ACP5
Orthologs for ACP5
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ACP5 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for ACP5 ENSEMBL Gene Tree for ACP5 Paralogs for ACP5 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for ACP5 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ACP5 (up to first 250kb)
Disorders & Mutations for ACP5
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 171640 UniProtKB/Swiss-Prot: PPA5_HUMAN, P13686
This relatively minor intracellular isozyme of acid phosphatase can become the dominantisozyme in certain pathological states (Gaucher and Hodgkin diseases, the hairy cell, the B-cell,and the T-cell leukemias)
10/41 Novoseek disease relationships for ACP5 gene (see all 41
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
osteoclastoma
85.66
6
7768539 (1), 10784406 (1), 8463220 (1), 11838317 (1) (see all 5 )
leukemia hairy cell
79.56
14
9888357 (1), 15222122 (1), 9145320 (1), 9291460 (1) (see all 14 )
bone destruction
65.37
1
9145320 (1)
bone diseases
62.75
5
16869970 (2), 2402608 (1), 17088078 (1)
bone loss
62.68
1
17963952 (1)
osteolysis
58.97
2
9730060 (1), 15513686 (1)
gaucher disease
54.34
6
9291460 (1), 10784406 (1), 11373314 (1), 8618440 (1) (see all 6 )
bone diseases metabolic
51.64
2
1750188 (1), 1767245 (1)
rheumatoid arthritis
46.09
4
19333923 (1), 11020469 (1), 12594102 (1)
hyperparathyroidism secondary
45.34
3
12589973 (2), 1750188 (1)
About this table Human Genome Epidemiology Navigator: ACP5 (1 document)
Medical News for ACP5 (Possibly Related Articles in
Doctor's Guide )
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Publications for ACP5 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/296 PubMed articles for ACP5 gene (see all 296
): Type 5 acid phosphatase. Sequence, expression and chromosomal localization of a differentiation-associated protein of the human macrophage. (PubMed id 2338077) 2, 3, 4 Lord D.K....Cox T.M. (1990) Assignment of the mouse tartrate-resistant acid phosphatase gene (Acp5) to chromosome 9. (PubMed id 8449511) 1, 2, 3 Grimes R....Windle J.J. (1993) Purification and N-terminal amino acid sequence of the tartrate- resistant acid phosphatase from human osteoclastoma: evidence for a single structure. (PubMed id 2334436) 1, 3, 4 Stepan J.J.... Baylink D.J. (1990) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Isolation and characterization of the genes encoding mouse and human type-5 acid phosphatase. (PubMed id 8359686) 3, 4 Cassady A.I.... Hume D.A. (1993) Tartrate-resistant acid phosphatase from human osteoclastomas is translated as a single polypeptide. (PubMed id 1872798) 3, 4 Hayman A.R.... Warburton M.J. (1991) Purification and N-terminal sequence of two tartrate-resistant acid phosphatases type-5 from the hairy cell leukemia spleen. (PubMed id 2610679) 3, 4 Stepan J.J.... Baylink D.J. (1989) Molecular cloning of the type 5, iron-containing, tartrate-resistant acid phosphatase from human placenta. (PubMed id 2909539) 3, 4 Ketcham C.M.... Nick H.S. (1989) Purification and characterization of a tartrate-resistant acid phosphatase from human osteoclastomas. (PubMed id 2775236) 3, 4 Hayman A.R.... Chambers T.J. (1989) Increased tartrate-resistant acid phosphatase (TRAP) expression in malignant breast, ovarian and melanoma tissue: an investigational study. (PubMed id 16869970) 1, 3 Honig A....Kammerer U. (2006)
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Genome Databases showing ACP5
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ACP5
(According to HUGE )
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Specialized Databases showing ACP5 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ACP5 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009