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Aliases & Descriptions for ACP2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions acid phosphatase 2, lysosomal1 2 LAP2 3 lysosomal acid phosphatase2 EC 3.1.3.23
Search outside databases for aliases for ACP2 genePrevious GC identifers: GC11M049200 GC11M048138 GC11M047292 GC11M047225
Summaries for ACP2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for ACP2 : This gene encodes the beta subunit of lysosomal acid phosphatase (LAP). LAP is chemically and genetically distinct from red cell acid phosphatase. The encoded protein belongs to a family of distinct isoenzymes which hydrolyze orthophosphoric monoesters to alcohol and phosphate. Mutations in this gene or in the related alpha subunit gene cause acid phosphatase deficiency. Multiple alternatively spliced transcript variants encoding different isoforms have been identified for this gene. (provided by RefSeq) Gene Wiki entry for ACP2
Genomic Views for ACP2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ACP2 gene upstream (promoter) region :NF-kappaB1 HNF-4alpha2 COUP-TF1 GATA-1 GR-alpha GR-beta Cart-1 STAT3 Lmo2 ZID Epigenetics: SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for ACP2: MePH15079-1A Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11p11.2-p11.11|11p12-p11 Ensembl cytogenetic band: 11p11.2 HGNC cytogenetic band: 11p11.2 ACP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M047218: view genomic region
(about GC identifiers )
Start:
47,260,853 bp from pter
End:
47,270,457 bp from pter
Size:
9,605 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.9 NT_009237.18 Proteins for ACP2 gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: PPAL_HUMAN, P11117 (See
protein sequence )Recommended Name: Lysosomal acid phosphatase precursor Size : 423 amino acids; 48344 Da
Subcellular location : Lysosome membrane; Single-pass membrane protein; Lumenal side. Lysosome lumen. Note=The solubleform arises by proteolytic processing of the membrane-bound form
Secondary accessions : Q561W5 Q9BTU7Post-translational modifications:
The membrane-bound form is converted to the soluble form by sequential proteolytic processing. First, the C-terminal cytoplasmic tail is removed. Cleavage by a lysosomal protease releases the soluble form in the lysosome lumen1
N-glycosylated. The intermediates formed during enzymatic deglycosylation suggest that all eight predicted N-glycosylation sites are used1
REFSEQ proteins (2 alternative transcripts):
NP_001124536.1 NP_001601.1 ENSEMBL proteins: ENSP00000414911 ENSP00000256997 Human Recombinant Proteins 5/6 Gene Ontology (GO) cellular component terms (GO ID links to tree view) (see all 6
):
About this table
ACP2 for ontologies About GeneDecksing Antibodies for ACP2: Assays for ACP2:
Protein
Domains/ Families for ACP2 gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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ACP2 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry P11117 ProtoNet protein and cluster: P11117
1 Blocks protein family : IPB000560 Histidine acid phosphatase UniProtKB/Swiss-Prot: PPAL_HUMAN, P11117 Similarity : Belongs to the histidine acid phosphatase family
Gene Function for ACP2 gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
Applied Biosystems ,
Sigma-Aldrich , Clones from
Millipore ,
Sigma-Aldrich ,
OriGene ,
Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: PPAL_HUMAN, P11117 Catalytic activity : A phosphate monoester + H(2)O = an alcohol + phosphateEnzyme Number (IUBMB): EC 3.1.3.2
Genatlas biochemistry entry for ACP2 :phosphatase acid,lysosomal 4 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001784 phosphotyrosine binding
IEA -- GO:0003993 acid phosphatase activity
IEA -- GO:0004721 phosphoprotein phosphatase activity
IEA -- GO:0016787 hydrolase activity
IEA --
About this table
ACP2 for ontologies About GeneDecksing Animal Models: 9 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Acp2) :
ACP2 for phenotypes About GeneDecksing Pathways & Interactions for ACP2 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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ACP2 for pathways About GeneDecksing 1 Millipore Pathway for ACP2 1 Sigma-Aldrich "Your Favorite Gene" Pathway for ACP2 (Your Favorite Gene powered by Ingenuity) 2 Kegg Pathways (Kegg details for ACP2) : Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ACP2 5/12 Interacting proteins for ACP2 (ENSP00000256997 3 ) via UniProtKB, MINT, and/or STRING (see all 12
) About this table 3 Gene Ontology (GO) biological process terms (GO ID links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001501 skeletal system development
IEA -- GO:0007040 lysosome organization
IEA -- GO:0010033 response to organic substance
IEA --
About this table
ACP2 for ontologies About GeneDecksing
Drugs & Compounds for ACP2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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ACP2 for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for ACP2
Browse Tocris compounds for ACP2 10/74 Novoseek chemical compound relationships for ACP2 gene (see all 74
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
mannose 6-phosphate
12.90
8
2540767 (3), 9119490 (2), 1353723 (2), 2209556 (1)
4-methylumbelliferyl phosphate
5.32
2
6465319 (1), 5823497 (1)
tartrate
4.31
3
6455992 (1), 3964226 (1), 1580139 (1)
hghpo4
3.97
1
7531537 (1)
cerium
3.30
2
3363682 (1), 2406336 (1)
tyrosine
3.20
12
11801736 (5), 1425575 (3), 2209556 (2), 8509395 (1) (see all 5 )
diosmetin
2.51
1
1609428 (1)
methylmercury hydroxide
2.42
1
1123912 (1)
isocitrate
2.17
2
9589866 (1), 9284916 (1)
percoll
2.05
2
8276775 (1), 6651773 (1)
About this table 2 PharmGKB drug compound relationships for ACP2 gene About this table
Transcripts for ACP2 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Primers from
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User Feedback Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_001131064 NM_001610 Clones: Origene GFP tagged cDNA clones in CMV expression vector (see all 2 ): ACP2 Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): ACP2 Origene untagged cDNA clones in CMV expression vector (see all 2 ): ACP2
Primers: Origene genome-wide validated SYBR primer pairs: ACP2 SABiosciences RT2 qPCR Primer Assay for ACP2: PPH09976A
REFSEQ mRNAs for ACP2 gene (2 alternative transcripts): NM_001131064.1 NM_001610.2
Additional cDNA sequence: AK097626.1 AK298122.1 AK298439.1 AK299382.1 AK300569.1 AK300911.1 AK300931.1 AK301860.1 AK303894.1 AK308512.1 AK311431.1 AY007137.1 BC003160.1 BC093010.1 CR615614.1 X12548.1
24/26 DOTS entries (see all 26
): DT.453062 DT.120730697 DT.120730669 DT.120730611 DT.120730662 DT.100826998 DT.95371018 DT.120730590
DT.92450332 DT.120730554 DT.100688828 DT.40115915 DT.120730700 DT.100740730 DT.100757035 DT.100827000 DT.100826997 DT.100827002 DT.92450333 DT.95371021 DT.120730612 DT.100826996 DT.120730574 DT.120730596 24/293 AceView cDNA sequences (see all 293
):
BM761444 CB153764 BM843752 BM848638 BU845972 CD516138 AU124511 CA395596 BI258108 CR615614 BM845024 BM839879 BU168785 BM761124 NM_001610 AU107366 BM844193 CB126883 BI824000 AU107372 AU107378 BM126369 AY007137 BP361972
highest scoring ESTs for ACP2 :AL541808 AL544274 AU117286 AU124511 AU124889 AU134828 AU135039 AU142120 AU280535 BC003160 Unigene Cluster for ACP2:
Acid phosphatase 2, lysosomal Hs.532492 [show with all ESTs ] Unigene Representative Sequence: AK097626 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ACP2 (see all 6
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9 ^ 10 ^ 11a · 11b SP1 :           -     -       -   -                 SP2 :           -     -       -                   SP3 :                                       SP4 :           -                             SP5 :                                      
About this scheme ECgene alternative splicing isoforms for ACP2 2 Ensembl transcripts including schematic representations : ENST00000444355
ENST00000256997
Expression for ACP2 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback ACP2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ACP2 1 / 2 / 3
3 probe-sets matching ACP2 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
36651_at2 , 3
U95-A
1
0.94
1.00
1.00
1.00
X15525
0.20
1.00
0.72
1
202767_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_001610
0.60
1.00
0.82
1
202767_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
ACP2 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAGGTTGTGA SOURCE GeneReport for Unigene cluster: Hs.532492 Expression variation in blood from EXPOLDB for ACP2
Primers: Origene genome-wide validated SYBR primer pairs: ACP2 SABiosciences RT2 qPCR Primer Assay for ACP2: PPH09976A
Orthologs for ACP2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ACP2 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for ACP2 ENSEMBL Gene Tree for ACP2 Paralogs for ACP2 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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User Feedback Paralogs for ACP2 gene ACPP 2 ACP6 2 ACPT 2
ACP2 for paralogs About GeneDecksing
Genomic Variants for ACP2 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ACP2 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for ACP2: --
Disorders & Mutations for ACP2 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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ACP2 for disorders About GeneDecksing
OMIM: 171650 disorders : 200950 UniProtKB/Swiss-Prot: PPAL_HUMAN, P11117
Defects in ACP2 are a cause of acid phosphatase deficiency (ACPHD) [MIM:200950]. The clinical features are intermittent vomiting, hypotonia, lethargy, opisthotonos, terminal bleeding, and death in early infancy. Lysosomal acid phosphatase is deficient in cultured fibroblasts and multiple tissues
10/40 Novoseek disease relationships for ACP2 gene (see all 40
)
About this table 1 PharmGKB disease relationship for ACP2 gene About this table Genatlas disease: ACP2 phosphatase acid,deficiency Human Genome Epidemiology Navigator: ACP2 (2 documents)
Medical News for ACP2 gene (Possibly Related Articles in
Doctor's Guide )
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User Feedback --
Publications for ACP2 gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 10/71 PubMed articles for ACP2 gene (see all 71
): Assignment and linear order of human acid phosphatase-2, esterase A4, and lactate dehydrogenase A genes on chromosome 11. (PubMed id 975882) 1, 2, 3 Shows T.B....Lalley P.A. (1976) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3 , 4 Gerhard D.S....Malek J. (2004) Structure of the human lysosomal acid phosphatase gene. (PubMed id 2776754) 3 , 4 Geier C.... Pohlmann R. (1989) Human lysosomal acid phosphatase: cloning, expression and chromosomal assignment. (PubMed id 3191910) 3 , 4 Pohlmann R.... von Figura K. (1988) Deficiency of lysosomal acid phosphatase. A new familial metabolic disorder. (PubMed id 5410815) 3 , 4 Nadler H.L. and Egan T.J. (1970) The tyrosine motifs of Lamp 1 and LAP determine their direct and indirect targetting to lysosomes. (PubMed id 11801736) 1, 3 Obermuller S....Honing S. (2002) Identification of a novel risk locus for progressive supranuclear palsy by a pooled genomewide scan of 500,288 single-nucleotide polymorphisms. (PubMed id 17357082) 1, 3 Melquist S....Stephan D.A. (2007) Cathepsin G, acid phosphatase, and alpha 1-proteinase inhibitor messenger RNA levels in keratoconus corneas. (PubMed id 9040486) 1, 3 Whitelock R.B....Yue B.Y. (1997) Clinical and biological aspects of acid phosphatase. (PubMed id 7576159) 1, 3 Moss D.W....Wile D.B. (1995) Biosynthesis and processing of lysosomal acid phosphatase in cultured human cells. (PubMed id 3904632) 1, 3 Waheed A. and Van Etten R.L. (1985)
Search for ACP2 gene
(in PubMed ,
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Genome Databases showing ACP2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing ACP2 gene
(According to HUGE )
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Specialized Databases showing ACP2 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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User Feedback Patent Information for ACP2 gene: Search GeneIP for patents involving ACP2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search Services for ACP2 gene (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Novus Biologicals ,Epitomics , Sigma-Aldrich , R&D Systems , SABiosciences , Millipore , Abnova , Clones available from OriGene , Sigma-Aldrich , Sino Biological , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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User Feedback Products for ACP2:
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Aliases for ACP2
Databases for ACP2
Disorders for ACP2
Domains/Families for ACP2
Drugs/Compounds for ACP2
Expression for ACP2
Function for ACP2
Genomic Views for ACP2
Intellectual Property for ACP2
Medical News for ACP2
Orthologs for ACP2
Paralogs for ACP2
Pathways/Interactions for ACP2
Proteins for ACP2
Publications for ACP2
Search Box for ACP2
Services for ACP2
Summaries for ACP2
Transcripts for ACP2
Variants for ACP2
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