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Aliases for ACOXL-AS1 Gene

Subcategory (RNA class) for ACOXL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ACOXL-AS1 Gene

  • ACOXL Antisense RNA 1 2 3 5

External Ids for ACOXL-AS1 Gene

Summaries for ACOXL-AS1 Gene

GeneCards Summary for ACOXL-AS1 Gene

ACOXL-AS1 (ACOXL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ACOXL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACOXL-AS1 Gene

Genomics for ACOXL-AS1 Gene

Regulatory Elements for ACOXL-AS1 Gene

Enhancers for ACOXL-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H111697 2 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -583.5 -583492 2.4 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 ZNF143 FOS ACOXL-AS1 BCL2L11 GC02M111609 PIR34777
GH02H111700 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -589.0 -588956 8.2 ARNT ARID4B FEZF1 ZNF143 FOS ATF7 RUNX3 MXD4 JUNB TSHZ1 ACOXL-AS1 BCL2L11 GC02M111609 ENSG00000227842
GH02H111070 1.2 FANTOM5 Ensembl ENCODE 11.1 +43.7 43680 2.3 JUN MAX EBF1 RELA JUND POLR2A IKZF1 RUNX3 IKZF2 SPI1 ACOXL-AS1 BCL2L11 LINC00116 GC02M110971
GH02H111162 1.2 Ensembl ENCODE 10.8 -47.3 -47333 1.6 HDAC1 FOXA2 TBL1XR1 BATF RAD21 YY1 TCF12 ZNF766 GATA2 ELK1 BCL2L11 ACOXL-AS1 GC02M111153 ENSG00000230499
GH02H111184 1 ENCODE 11.4 -70.3 -70271 2.3 FEZF1 ZNF2 TCF12 GLIS2 KLF7 TSHZ1 ZNF488 NFIL3 ZNF610 ZSCAN16 BCL2L11 RPL22P12 ENSG00000227842 LOC100420892 ANAPC1 RGPD6 ACOXL-AS1 ENSG00000235881 ENSG00000230499 GC02M111153
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ACOXL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ACOXL-AS1 Gene

Genomic Locations for ACOXL-AS1 Gene
chr2:111,098,341-111,115,588
(GRCh38/hg38)
Size:
17,248 bases
Orientation:
Minus strand
chr2:111,855,918-111,873,165
(GRCh37/hg19)

Genomic View for ACOXL-AS1 Gene

Genes around ACOXL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACOXL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACOXL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACOXL-AS1 Gene

Proteins for ACOXL-AS1 Gene

Post-translational modifications for ACOXL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACOXL-AS1 Gene

Domains & Families for ACOXL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACOXL-AS1 Gene

Function for ACOXL-AS1 Gene

Phenotypes From GWAS Catalog for ACOXL-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACOXL-AS1 Gene

Localization for ACOXL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ACOXL-AS1 Gene

Pathways & Interactions for ACOXL-AS1 Gene

SuperPathways for ACOXL-AS1 Gene

No Data Available

Interacting Proteins for ACOXL-AS1 Gene

Gene Ontology (GO) - Biological Process for ACOXL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACOXL-AS1 Gene

Drugs & Compounds for ACOXL-AS1 Gene

No Compound Related Data Available

Transcripts for ACOXL-AS1 Gene

mRNA/cDNA for ACOXL-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ACOXL-AS1 Gene

No ASD Table

Relevant External Links for ACOXL-AS1 Gene

GeneLoc Exon Structure for
ACOXL-AS1
ECgene alternative splicing isoforms for
ACOXL-AS1

Expression for ACOXL-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACOXL-AS1 Gene

Orthologs for ACOXL-AS1 Gene

Evolution for ACOXL-AS1 Gene

ENSEMBL:
Gene Tree for ACOXL-AS1 (if available)
TreeFam:
Gene Tree for ACOXL-AS1 (if available)

No data available for Orthologs for ACOXL-AS1 Gene

Paralogs for ACOXL-AS1 Gene

No data available for Paralogs for ACOXL-AS1 Gene

Variants for ACOXL-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACOXL-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000011771 -- 111,100,043(+) CCTGG(A/T)CACAG intron-variant, nc-transcript-variant
rs1000017590 -- 111,099,129(+) GCACT(A/G)GATGC intron-variant, nc-transcript-variant
rs1000468062 -- 111,100,376(+) GAAGG(C/T)CACTC intron-variant, nc-transcript-variant
rs1000564010 -- 111,107,548(+) CAATG(G/T)CACGA intron-variant, downstream-variant-500B
rs1000917537 -- 111,113,668(+) GGAAT(A/T)AAGGT intron-variant

Relevant External Links for ACOXL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACOXL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACOXL-AS1 Gene

Disorders for ACOXL-AS1 Gene

Relevant External Links for ACOXL-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACOXL-AS1

No disorders were found for ACOXL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACOXL-AS1 Gene

Publications for ACOXL-AS1 Gene

  1. A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia. (PMID: 24292274) Speedy HE … Houlston RS (Nature genetics 2014) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for ACOXL-AS1 Gene

Sources for ACOXL-AS1 Gene

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