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Aliases for ACOXL-AS1 Gene

Subcategory (RNA class) for ACOXL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ACOXL-AS1 Gene

  • ACOXL Antisense RNA 1 2 3 5

External Ids for ACOXL-AS1 Gene

Summaries for ACOXL-AS1 Gene

GeneCards Summary for ACOXL-AS1 Gene

ACOXL-AS1 (ACOXL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACOXL-AS1 Gene

Genomics for ACOXL-AS1 Gene

Regulatory Elements for ACOXL-AS1 Gene

Enhancers for ACOXL-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G111697 2 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -583.5 -583492 2.4 HDGF PKNOX1 FOXA2 CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF143 BCL2L11 ACOXL-AS1 GC02M111609 PIR34777
GH02G111700 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -589.0 -588956 8.2 ARNT ARID4B FEZF1 CBX5 ZNF143 FOS MXD4 JUNB TSHZ1 REST ACOXL-AS1 BCL2L11 GC02M111609 ENSG00000227842
GH02G111070 1.3 FANTOM5 Ensembl ENCODE 11.1 +43.7 43680 2.3 PKNOX1 JUN MAX EBF1 RELA ARID3A GATA2 POLR2A FOS IKZF2 ACOXL-AS1 BCL2L11 LINC00116 GC02M110971
GH02G111162 1.3 Ensembl ENCODE 10.8 -47.3 -47333 1.6 FOXA2 MLX SIN3A ARID4B DMAP1 ZNF48 YY1 TCF12 SLC30A9 ZNF766 BCL2L11 ACOXL-AS1 GC02M111153 ENSG00000230499
GH02G111184 1 ENCODE 11.4 -70.3 -70271 2.3 FEZF1 ZNF2 TCF12 GLIS2 KLF7 ZNF263 TSHZ1 ZNF488 TBX21 ZNF610 BCL2L11 ACOXL-AS1 ENSG00000230499 GC02M111153
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ACOXL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ACOXL-AS1 Gene

Chromosome:
2
Start:
111,098,341 bp from pter
End:
111,115,588 bp from pter
Size:
17,248 bases
Orientation:
Minus strand

Genomic View for ACOXL-AS1 Gene

Genes around ACOXL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACOXL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACOXL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACOXL-AS1 Gene

Proteins for ACOXL-AS1 Gene

Post-translational modifications for ACOXL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ACOXL-AS1 Gene

Domains & Families for ACOXL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ACOXL-AS1 Gene

Function for ACOXL-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ACOXL-AS1 Gene

Localization for ACOXL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ACOXL-AS1 Gene

Pathways & Interactions for ACOXL-AS1 Gene

SuperPathways for ACOXL-AS1 Gene

No Data Available

Interacting Proteins for ACOXL-AS1 Gene

Gene Ontology (GO) - Biological Process for ACOXL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ACOXL-AS1 Gene

Drugs & Compounds for ACOXL-AS1 Gene

No Compound Related Data Available

Transcripts for ACOXL-AS1 Gene

mRNA/cDNA for ACOXL-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ACOXL-AS1 Gene

No ASD Table

Relevant External Links for ACOXL-AS1 Gene

GeneLoc Exon Structure for
ACOXL-AS1
ECgene alternative splicing isoforms for
ACOXL-AS1

Expression for ACOXL-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACOXL-AS1 Gene

Orthologs for ACOXL-AS1 Gene

Evolution for ACOXL-AS1 Gene

ENSEMBL:
Gene Tree for ACOXL-AS1 (if available)
TreeFam:
Gene Tree for ACOXL-AS1 (if available)

No data available for Orthologs for ACOXL-AS1 Gene

Paralogs for ACOXL-AS1 Gene

No data available for Paralogs for ACOXL-AS1 Gene

Variants for ACOXL-AS1 Gene

Sequence variations from dbSNP and Humsavar for ACOXL-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000011771 -- 111,100,043(+) CCTGG(A/T)CACAG intron-variant, nc-transcript-variant
rs1000017590 -- 111,099,129(+) GCACT(A/G)GATGC intron-variant, nc-transcript-variant
rs1000468062 -- 111,100,376(+) GAAGG(C/T)CACTC intron-variant, nc-transcript-variant
rs1000564010 -- 111,107,548(+) CAATG(G/T)CACGA intron-variant, downstream-variant-500B
rs1000917537 -- 111,113,668(+) GGAAT(A/T)AAGGT intron-variant

Relevant External Links for ACOXL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACOXL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ACOXL-AS1 Gene

Disorders for ACOXL-AS1 Gene

No disorders were found for ACOXL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ACOXL-AS1 Gene

Publications for ACOXL-AS1 Gene

  1. A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia. (PMID: 24292274) Speedy H.E. … Houlston R.S. (Nat. Genet. 2014) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ACOXL-AS1 Gene

Sources for ACOXL-AS1 Gene

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