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Aliases for ACOX2 Gene

Aliases for ACOX2 Gene

  • Acyl-CoA Oxidase 2 2 3 5
  • 3-Alpha,7-Alpha,12-Alpha-Trihydroxy-5-Beta-Cholestanoyl-CoA 24-Hydroxylase 2 3 4
  • Trihydroxycoprostanoyl-CoA Oxidase 2 3 4
  • 3-Alpha,7-Alpha,12-Alpha-Trihydroxy-5-Beta-Cholestanoyl-CoA Oxidase 3 4
  • Acyl-Coenzyme A Oxidase 2, Branched Chain 2 3
  • Acyl-CoA Oxidase 2, Branched Chain 2 3
  • Branched Chain Acyl-CoA Oxidase 2 3
  • THCA-CoA Oxidase 3 4
  • THCCox 3 4
  • Peroxisomal Branched Chain Acyl-CoA Oxidase 3
  • Peroxisomal Acyl-Coenzyme A Oxidase 2 3
  • EC 1.17.99.3 4
  • BRCACOX 3
  • BRCOX 3
  • BCOX 3

External Ids for ACOX2 Gene

Previous GeneCards Identifiers for ACOX2 Gene

  • GC03M057354
  • GC03M057859
  • GC03M058345
  • GC03M058448
  • GC03M058465

Summaries for ACOX2 Gene

Entrez Gene Summary for ACOX2 Gene

  • The product of this gene belongs to the acyl-CoA oxidase family. It encodes the branched-chain acyl-CoA oxidase which is involved in the degradation of long branched fatty acids and bile acid intermediates in peroxisomes. Deficiency of this enzyme results in the accumulation of branched fatty acids and bile acid intermediates, and may lead to Zellweger syndrome, severe mental retardation, and death in children. [provided by RefSeq, Mar 2009]

GeneCards Summary for ACOX2 Gene

ACOX2 (Acyl-CoA Oxidase 2) is a Protein Coding gene. Among its related pathways are PPAR signaling pathway and Peroxisome. GO annotations related to this gene include receptor binding and oxidoreductase activity, acting on the CH-CH group of donors. An important paralog of this gene is ACOX1.

UniProtKB/Swiss-Prot for ACOX2 Gene

  • Oxidizes the CoA esters of the bile acid intermediates di- and tri-hydroxycholestanoic acids.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACOX2 Gene

Genomics for ACOX2 Gene

Regulatory Elements for ACOX2 Gene

Enhancers for ACOX2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around ACOX2 on UCSC Golden Path with GeneCards custom track

Promoters for ACOX2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for ACOX2 Gene

Chromosome:
3
Start:
58,505,136 bp from pter
End:
58,537,348 bp from pter
Size:
32,213 bases
Orientation:
Minus strand

Genomic View for ACOX2 Gene

Genes around ACOX2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ACOX2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ACOX2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ACOX2 Gene

Proteins for ACOX2 Gene

  • Protein details for ACOX2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q99424-ACOX2_HUMAN
    Recommended name:
    Peroxisomal acyl-coenzyme A oxidase 2
    Protein Accession:
    Q99424
    Secondary Accessions:
    • A6NF16
    • B2R8U5

    Protein attributes for ACOX2 Gene

    Size:
    681 amino acids
    Molecular mass:
    76827 Da
    Cofactor:
    Name=FAD; Xref=ChEBI:CHEBI:57692;
    Quaternary structure:
    • Heterodimer.

neXtProt entry for ACOX2 Gene

Post-translational modifications for ACOX2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ACOX2 Gene

No data available for DME Specific Peptides for ACOX2 Gene

Domains & Families for ACOX2 Gene

Graphical View of Domain Structure for InterPro Entry

Q99424

UniProtKB/Swiss-Prot:

ACOX2_HUMAN :
  • Belongs to the acyl-CoA oxidase family.
Family:
  • Belongs to the acyl-CoA oxidase family.
genes like me logo Genes that share domains with ACOX2: view

No data available for Gene Families for ACOX2 Gene

Function for ACOX2 Gene

Molecular function for ACOX2 Gene

GENATLAS Biochemistry:
peroxisomal acyl-CoA oxidase,acting on the CoA-esters of bile acid intermediates and pristanic acid ,expressed in liver and extrahepatic tissues,about null activity in the Zellweger cerebrohepatorenal syndrome
UniProtKB/Swiss-Prot CatalyticActivity:
(25R)-3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestan-26-oyl-CoA + H(2)O + acceptor = (24R,25R)-3-alpha,7-alpha,12-alpha,24-tetrahydroxy-5-beta-cholestan-26-oyl-CoA + reduced acceptor.
UniProtKB/Swiss-Prot Function:
Oxidizes the CoA esters of the bile acid intermediates di- and tri-hydroxycholestanoic acids.

Enzyme Numbers (IUBMB) for ACOX2 Gene

Gene Ontology (GO) - Molecular Function for ACOX2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000062 fatty-acyl-CoA binding IBA --
GO:0003995 acyl-CoA dehydrogenase activity IBA --
GO:0003997 acyl-CoA oxidase activity TAS --
GO:0005102 receptor binding IPI 20178365
GO:0005504 fatty acid binding IEA --
genes like me logo Genes that share ontologies with ACOX2: view
genes like me logo Genes that share phenotypes with ACOX2: view

Animal Model Products

  • Taconic Biosciences Mouse Models for ACOX2

CRISPR Products

miRNA for ACOX2 Gene

miRTarBase miRNAs that target ACOX2

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ACOX2 Gene

Localization for ACOX2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ACOX2 Gene

Peroxisome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ACOX2 Gene COMPARTMENTS Subcellular localization image for ACOX2 gene
Compartment Confidence
mitochondrion 5
peroxisome 5
cytosol 2
nucleus 2
extracellular 1

Gene Ontology (GO) - Cellular Components for ACOX2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA --
GO:0005777 peroxisome IDA 2079609
GO:0005782 peroxisomal matrix TAS --
GO:0043231 intracellular membrane-bounded organelle IDA --
genes like me logo Genes that share ontologies with ACOX2: view

Pathways & Interactions for ACOX2 Gene

genes like me logo Genes that share pathways with ACOX2: view

Interacting Proteins for ACOX2 Gene

Gene Ontology (GO) - Biological Process for ACOX2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006699 bile acid biosynthetic process TAS --
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase IBA --
GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase TAS --
GO:0055088 lipid homeostasis IBA --
genes like me logo Genes that share ontologies with ACOX2: view

No data available for SIGNOR curated interactions for ACOX2 Gene

Drugs & Compounds for ACOX2 Gene

(4) Drugs for ACOX2 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
FAD Approved Pharma 0
Water Approved Pharma 0
Propionyl-CoA Experimental Pharma 0

(39) Additional Compounds for ACOX2 Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
(25S)-3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestan-26-oyl-CoA
(25S)-3alpha,7alpha-Dihydroxy-5beta-cholestanoyl-CoA
(2E)-Decenoyl-CoA
  • (E)-S-2-decenoate
  • (E)-S-2-decenoate CoA
  • (E)-S-2-decenoate Coenzyme A
  • (E)-S-2-decenoic acid
  • 2-trans-Decenoyl-CoA
10018-95-8
(2E)-Dodecenoyl-CoA
  • (2E)-Dodec-2-enoyl-CoA
  • (2E)-Dodec-2-enoyl-Coenzyme A
  • 2-trans-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
1066-12-2
(2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-CoA
  • (2E)-Hexadecenoyl-Coenzyme A
  • trans-2-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-Coenzyme A
4460-95-1
genes like me logo Genes that share compounds with ACOX2: view

Transcripts for ACOX2 Gene

Unigene Clusters for ACOX2 Gene

Acyl-CoA oxidase 2, branched chain:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ACOX2 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c · 11d ^ 12a ·
SP1: - - - - - - -
SP2: - - - -
SP3:
SP4:
SP5: - - -
SP6: -
SP7: - -
SP8: - -
SP9: -
SP10: -
SP11: -

ExUns: 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17
SP1: -
SP2:
SP3: -
SP4:
SP5:
SP6: -
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for ACOX2 Gene

GeneLoc Exon Structure for
ACOX2
ECgene alternative splicing isoforms for
ACOX2

Expression for ACOX2 Gene

mRNA expression in normal human tissues for ACOX2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ACOX2 Gene

This gene is overexpressed in Liver (x12.1).

Protein differential expression in normal tissues from HIPED for ACOX2 Gene

This gene is overexpressed in Liver (50.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ACOX2 Gene



Protein tissue co-expression partners for ACOX2 Gene

NURSA nuclear receptor signaling pathways regulating expression of ACOX2 Gene:

ACOX2

SOURCE GeneReport for Unigene cluster for ACOX2 Gene:

Hs.444959

mRNA Expression by UniProt/SwissProt for ACOX2 Gene:

Q99424-ACOX2_HUMAN
Tissue specificity: Present in all tissues tested: heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas. Most abundant in heart, liver and kidney.
genes like me logo Genes that share expression patterns with ACOX2: view

Primer Products

Orthologs for ACOX2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ACOX2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ACOX2 34
  • 83.14 (n)
  • 80 (a)
ACOX2 35
  • 80 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ACOX2 34
  • 84.39 (n)
  • 79.15 (a)
ACOX2 35
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Acox2 34
  • 79.83 (n)
  • 73.42 (a)
Acox2 16
Acox2 35
  • 73 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ACOX2 34
  • 99.46 (n)
  • 99.27 (a)
ACOX2 35
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Acox2 34
  • 79.1 (n)
  • 74.01 (a)
oppossum
(Monodelphis domestica)
Mammalia ACOX2 35
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 59 (a)
OneToMany
-- 35
  • 62 (a)
OneToMany
chicken
(Gallus gallus)
Aves ACOX2 34
  • 63.17 (n)
  • 58.51 (a)
ACOX2 35
  • 57 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ACOX2 35
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia acox2 34
  • 60.18 (n)
  • 55.17 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.16340 34
fruit fly
(Drosophila melanogaster)
Insecta Acox57D-d 36
  • 33 (a)
Acox57D-p 36
  • 37 (a)
CG4586 36
  • 34 (a)
Acox57D-d 35
  • 34 (a)
ManyToMany
Acox57D-p 35
  • 34 (a)
ManyToMany
CG4586 35
  • 34 (a)
ManyToMany
CG5009 35
  • 36 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea C48B4.1 36
  • 33 (a)
F08A8.1 36
  • 37 (a)
F08A8.2 36
  • 35 (a)
F08A8.3 36
  • 36 (a)
F08A8.4 36
  • 37 (a)
acox-1 35
  • 37 (a)
ManyToMany
C48B4.1 35
  • 33 (a)
ManyToMany
F08A8.2 35
  • 36 (a)
ManyToMany
F08A8.3 35
  • 35 (a)
ManyToMany
F08A8.4 35
  • 37 (a)
ManyToMany
F59F4.1 35
  • 36 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes POX1 35
  • 23 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 45 (a)
OneToMany
-- 35
  • 42 (a)
OneToMany
Species where no ortholog for ACOX2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for ACOX2 Gene

ENSEMBL:
Gene Tree for ACOX2 (if available)
TreeFam:
Gene Tree for ACOX2 (if available)

Paralogs for ACOX2 Gene

Paralogs for ACOX2 Gene

(2) SIMAP similar genes for ACOX2 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with ACOX2: view

Variants for ACOX2 Gene

Sequence variations from dbSNP and Humsavar for ACOX2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs4681689 -- 58,516,981(+) TTCAA(A/C)TGAGG intron-variant
rs4681690 -- 58,529,839(+) TGAGG(A/G/T)ATGAA intron-variant
rs4681858 -- 58,504,938(+) cgccc(C/T)ACTGG downstream-variant-500B
rs4681860 -- 58,509,630(+) tttga(G/T)acaga intron-variant
rs4681861 -- 58,510,012(+) GTTGA(A/T)TCTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ACOX2 Gene

Variant ID Type Subtype PubMed ID
dgv4749n100 CNV gain 25217958
nsv1136727 CNV deletion 24896259
nsv3839 CNV deletion 18451855
nsv520486 CNV gain 19592680
nsv590370 CNV loss 21841781

Variation tolerance for ACOX2 Gene

Residual Variation Intolerance Score: 41.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.81; 47.68% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ACOX2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ACOX2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ACOX2 Gene

Disorders for ACOX2 Gene

Relevant External Links for ACOX2

Genetic Association Database (GAD)
ACOX2
Human Genome Epidemiology (HuGE) Navigator
ACOX2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ACOX2

No disorders were found for ACOX2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACOX2 Gene

Publications for ACOX2 Gene

  1. Molecular characterization of the human peroxisomal branched-chain acyl-CoA oxidase: cDNA cloning, chromosomal assignment, tissue distribution, and evidence for the absence of the protein in Zellweger's syndrome. (PMID: 8943006) Baumgart E. … Van Veldhoven P.P. (Proc. Natl. Acad. Sci. U.S.A. 1996) 2 3 4 22 65
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 65
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  4. Assignment of the human peroxisomal branched-chain acyl-CoA oxidase gene to chromosome 3p21.1-p14.2 by rodent/human somatic cell hybridization. (PMID: 9070889) Moghrabi N.N. … Bennett M.J. (Biochem. Biophys. Res. Commun. 1997) 2 3 65
  5. The CoA esters of 2-methyl-branched chain fatty acids and of the bile acid intermediates di- and trihydroxycoprostanic acids are oxidized by one single peroxisomal branched chain acyl-CoA oxidase in human liver and kidney. (PMID: 8387517) Vanhove G.F. … Mannaerts G.P. (J. Biol. Chem. 1993) 3 22 65

Products for ACOX2 Gene

Sources for ACOX2 Gene

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