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Aliases & Descriptions for ACO2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ACONM 1, 2 | | Aconitase 3 | | EC 4.2.1.3 3 | | MGC20605 2 | | MGC33908 2 | | OTTHUMP00000042146 2 | | OTTHUMP00000165920 2 |
| | | Descriptions |
|---|
| Citrate hydro-lyase 2, 3 | | aconitase 2, mitochondrial 2 | | aconitate hydratase 2 |
|
| | Search outside databases for aliases for ACO2 genePrevious GC identifers: GC22P038479 GC22P040108 |
Summaries for ACO2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ACO2: The protein encoded by this gene belongs to the aconitase/IPM isomerase family. It is an enzyme that catalyzes the interconversion of citrate to isocitrate via cis-aconitate in the second step of the TCA cycle. This protein is encoded in the nucleus and functions in the mitochondrion. It was found to be one of the mitochondrial matrix proteins that are preferentially degraded by the serine protease 15(PRSS15), also known as Lon protease, after oxidative modification. [provided by RefSeq]
|
Genomic Location for ACO2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ACO2 gene 
Entrez Gene cytogenetic band: 22q11.2-q13.31|22q13.2|22q13.2-q13.31 Ensembl cytogenetic band: 22q13.2 HGNC cytogenetic band: 22q13.2ACO2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure GeneLoc location for GC22P040189:
(about GC identifiers)
Start:
|
40,195,075 bp from pter |
End:
|
40,254,939 bp from pter |
Size:
|
59,865 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000022.9 NT_011520.11
| Proteins for ACO2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ACON_HUMAN, Q99798 (See
protein sequence)Recommended Name: Aconitate hydratase, mitochondrial precursor Size: 780 amino acids; 85425 Da
Cofactor: Binds 1 4Fe-4S cluster per subunit. Binding of a 3Fe-4S cluster leads to an inactive enzyme (By similarity)
Subunit: Monomer (By similarity)
Subcellular location: Mitochondrion (By similarity)
Secondary accessions: O75809 Q5JZ41 Q6FHX0 Q8TAQ6Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001089.1
ENSEMBL proteins: ENSP00000379769 ENSP00000216254
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ACO2: Assays for ACO2: | Protein
Domains/ Families for ACO2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q99798
ProtoNet protein and cluster: Q99798 2 Blocks protein families: IPB000573 Aconitate hydratase IPB001030 Aconitate hydratase
UniProtKB/Swiss-Prot: ACON_HUMAN, Q99798Similarity: Belongs to the aconitase/IPM isomerase family | Gene Function for ACO2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001098
Applied Biosystems Silencer® siRNAs for ACO2
Sigma-Aldrich siRNA for ACO2  Sigma-Aldrich shRNA for ACO2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001098                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001098                                  untagged cDNA clone in CMV expression vector: NM_001098 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001098
UniProtKB/Swiss-Prot: ACON_HUMAN, Q99798Catalytic activity: Citrate = isocitrateEnzyme Number (IUBMB): EC 4.2.1.3 Genatlas biochemistry entry for ACO2:aconitase 2,iron sulfur protein,catalyzing the mitochondrial,second step of citric acid cycle,ubiquitously expressed,including multiple isoforms1 MGI phenotypic allele for Aco2 (no phenotypes)
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ACO2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for ACO2 (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: ACON_HUMAN, Q99798Pathway: Carbohydrate metabolism; tricarboxylic acid cycle 5/36 Interacting proteins for ACO2 (Q997982 ENSP000002162543) via UniProtKB, MINT, and/or STRING (see all 36
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ACO2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ACO2 1 Novoseek chemical compound relationship for ACO2 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| pyruvate |
33.81 |
1 |
11681208 (1) |
About this table
|
Transcripts for ACO2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001098
Sigma-Aldrich siRNA for ACO2  Sigma-Aldrich shRNA for ACO2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001098 REFSEQ mRNAs for ACO2 gene: NM_001098.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001098               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001098                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001098                                  untagged cDNA clone in CMV expression vector: NM_001098  Additional cDNA sequence: AK293562.1 AK296260.1 AK297213.1 AK301321.1 AK302691.1 AK314845.1 BC014092.2 BC026196.2 BC127658.1 BC127659.1 CR456365.1 CR536568.1 CR592345.1 CR595461.1 CR596181.1 CR596278.1 CR596641.1 CR613743.1 CR619036.1 CR621307.1 U80040.1 24/46 DOTS entries (see all 46
): DT.97820748 DT.420057 DT.100891526 DT.95195997 DT.100891551 DT.100758261 DT.100891513 DT.100891519 DT.100891524 DT.100891528 DT.40114844 DT.75125607 DT.95302501 DT.100759825 DT.100891509 DT.100891539 DT.100891546 DT.100891547 DT.420055 DT.87078063 DT.92457677 DT.92457691 DT.97855757 DT.100026962 24/889 AceView cDNA sequences (see all 889
):BQ775995 BU181891 BX342748 BU501912 BF724140 AA437114 BM795120 BF026635 Z98458 CR614581 BM471282 BQ894362 BI869319 BE782540 AI471244 AI972921 BG032395 BU177463 BQ642766 CR613743 BM849867 BU584457 BM017912 BQ006733
highest scoring ESTs for ACO2:AA054733 AA054740 AA065109 AA084544 AA101510 AA114832 AA114955 AA290633 AA291040 AA324903 Unigene Cluster for ACO2: Aconitase 2, mitochondrial Hs.643610 [show with all ESTs]Unigene Representative Sequence: CR595461
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for ACO2 (see all 6
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | · | 6c | ^ | 7a | · | 7b | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11 | |
| SP1: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   |
About this scheme
ECgene alternative splicing isoforms for ACO2
2 Ensembl transcripts including schematic representations: ENST00000396512
ENST00000216254
|
Expression for ACO2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ACO2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ACO2
1 / 2 / 3 4 probe-sets matching ACO2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.643610
Expression variation in blood from EXPOLDB for ACO2 |
Orthologs for ACO2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ACO2 gene from 5/21 species (see all 21
)
About this table Species with no ortholog for ACO2
ENSEMBL Gene Tree for ACO2 | Paralogs for ACO2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ACO2 gene
- IREB22 ACO12
Pseudogenes
- 3 related pseudogenes
|
SNPs/Variants for ACO2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ACO2 (up to first 250kb)
|
Disorders & Mutations for ACO2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 100850
|
Medical News for ACO2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ACO2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/39 PubMed articles for ACO2 gene (see all 39
):- The DNA sequence of human chromosome 22. (PubMed id 10591208)2, 3, 4 Dunham I....O'Brien K.P. (1999)
- Characterization of the human mitochondrial aconitase gene (ACO2). (PubMed id 9630632)1, 3, 4 Mirel D.B....Wilhelmsen K.C. (1998)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- A genome annotation-driven approach to cloning the human ORFeome. (PubMed id 15461802)3, 4 Collins J.E.... Dunham I. (2004)
- Purification and partial amino acid sequence of human aconitase. (PubMed id 1946331)3, 4 Baldwin G.S.... Simpson R. (1991)
- Proteomic analysis of dorsolateral prefrontal cortex indicates the involvement of cytoskeleton, oligodendrocyte, energy metabolism and new potential markers in schizophrenia. (PubMed id 19110265)3 Martins-de-Souza D....Dias-Neto E. (2008)
- Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)3 Barbe L....Andersson-Svahn H. (2008)
- Manganese antagonizes iron blocking mitochondrial aconitase expression in human prostate carcinoma cells. (PubMed id 16625280)3 Tsui K.H....Juang H.H. (2006)
- Characterization of the mitochondrial aconitase promoter and the identification of transcription factor binding. (PubMed id 16598741)3 Yu Z....Franklin R.B. (2006)
- The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)4 Sjoeblom T.... Velculescu V.E. (2006)
|
Search for ACO2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ACO2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ACO2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ACO2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Aconitase |
|
| | | About This Section
| --
| Services for ACO2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ACO2:

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