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Aliases & Descriptions for ACO1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| ACONS 2 | | Aconitase 3 | | EC 4.2.1.3 3 | | IREB1 2, 3, 5 | | IREBP 1, 2 | | IREBP1 2 | | IRP1 1, 2, 3 | | OTTHUMP00000021176 2 | | OTTHUMP00000021177 2 | | OTTHUMP00000045233 2 |
| | | Descriptions |
|---|
| Citrate hydro-lyase 2, 3 | | Ferritin repressor protein 2, 3 | | IRE-BP 1 3 | | Iron regulatory protein 1 2, 3 | | Iron-responsive element-binding protein 1 3 | | aconitase 1 2 | | aconitase 1, soluble 2 | | aconitate hydratase 2 | | iron-responsive element binding protein 1 2 |
|
| | Search outside databases for aliases for ACO1 genePrevious GC identifers: GC09P032696 GC09P032554 |
Summaries for ACO1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ACO1: Aconitase 1, also known as iron regulatory element binding protein 1 (IREB1), is a cytosolic protein which binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5' UTR of ferritin mRNA, and in the 3' UTR of transferrin receptor mRNA. The iron-induced binding to the IRE results in repression of translation of ferritin mRNA, and inhibition of degradation of the otherwise rapidly degrading transferrin receptor mRNA. Thus, IREB1 plays a central role in cellular iron homeostasis. It was also shown to have aconitase activity, and hence grouped with the aconitase family of enzymes. [provided by RefSeq] UniProtKB/Swiss-Prot: ACOC_HUMAN, P21399Function: Binds to iron-responsive elements (IRES), which are stem-loop structures found in the 5'-UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'-UTR of transferrin receptor mRNA. Binding to the IRE element in ferritin results in the repression of its mRNA translation. Binding of the protein to the transferrin receptor mRNA inhibits the degradation of this otherwise rapidly degraded mRNA. This protein also expresses aconitase activity |
Genomic Location for ACO1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ACO1 gene 
Entrez Gene cytogenetic band: 9p22-q32|9p21.1 Ensembl cytogenetic band: 9p21.1 HGNC cytogenetic band: 9p21.1ACO1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P032374:
(about GC identifiers)
Start:
|
32,374,618 bp from pter |
End:
|
32,440,834 bp from pter |
Size:
|
66,217 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000009.10 NT_008413.17
| Proteins for ACO1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ACOC_HUMAN, P21399 (See
protein sequence)Recommended Name: Cytoplasmic aconitate hydratase Size: 889 amino acids; 98399 Da
Cofactor: Binds 1 4Fe-4S cluster per subunit (By similarity)
Subcellular location: Cytoplasm
PDB structure from and Proteopedia :2B3X (3D)
 2B3Y (3D)
 
Secondary accessions: Q14652Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002188.1
ENSEMBL proteins: ENSP00000369255 ENSP00000309477 ENSP00000369253
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ACO1: Assays for ACO1: | Protein
Domains/ Families for ACO1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P21399
ProtoNet protein and cluster: P21399 2 Blocks protein families: IPB000573 Aconitate hydratase IPB001030 Aconitate hydratase
UniProtKB/Swiss-Prot: ACOC_HUMAN, P21399Similarity: Belongs to the aconitase/IPM isomerase family | Gene Function for ACO1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002197
Applied Biosystems Silencer® siRNAs for ACO1
Sigma-Aldrich siRNA for ACO1  Sigma-Aldrich shRNA for ACO1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002197                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002197                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002197 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002197
UniProtKB/Swiss-Prot: ACOC_HUMAN, P21399Function: Binds to iron-responsive elements (IRES), which are stem-loop structures found in the 5'-UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'-UTR of transferrin receptor mRNA. Binding to the IRE element in ferritin results in the repression of its mRNA translation. Binding of the protein to the transferrin receptor mRNA inhibits the degradation of this otherwise rapidly degraded mRNA. This protein also expresses aconitase activityCatalytic activity: Citrate = isocitrateEnzyme Number (IUBMB): EC 4.2.1.3 Genatlas biochemistry entry for ACO1:bifunctional cytosolic aconitase,iron-responsive element binding protein3 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Aco1):
5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
): About this table | Pathways & Interactions for ACO1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for ACO1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for ACO1 
5/38 Interacting proteins for ACO1 (ENSP000003094773) via UniProtKB, MINT, and/or STRING (see all 38
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ACO1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ACO1 10/23 Novoseek chemical compound relationships for ACO1 gene (see all 23
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| iron |
87.78 |
704 |
11779155 (7), 9950149 (6), 11812787 (6), 10704227 (6) (see all 99) |
| iron-sulfur |
86.27 |
46 |
1421965 (2), 8203918 (2), 9092825 (2), 17244191 (2) (see all 32) |
| cubane |
72.79 |
4 |
12972614 (1), 15636585 (1), 18274988 (1), 8349646 (1) |
| cis-aconitate |
68.68 |
1 |
10419470 (1) |
| 5-aminolevulinic acid |
64.54 |
4 |
11741608 (1), 10522551 (1), 8290565 (1), 7881153 (1) |
| deferoxamine |
57.27 |
5 |
10704227 (1), 8727377 (1), 12547239 (1), 17200797 (1) |
| 2-mercaptoethanol |
53.18 |
6 |
1856222 (2), 10816424 (1), 7657289 (1) |
| isocitrate |
49.27 |
1 |
11085915 (1) |
| diamide |
43.31 |
1 |
8349646 (1) |
| peroxynitrite |
41.98 |
10 |
9242665 (3), 12459918 (3), 12820873 (2), 9325434 (1) (see all 5) |
About this table
|
Transcripts for ACO1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002197
Sigma-Aldrich siRNA for ACO1  Sigma-Aldrich shRNA for ACO1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002197 REFSEQ mRNAs for ACO1 gene: NM_002197.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002197               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002197                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002197                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002197  Additional cDNA sequence: AB209480.1 AF261088.1 AK057904.1 AK308752.1 BC018103.1 BX538349.1 M58510.1 Z11559.1 9 DOTS entries: DT.101974581 DT.455868 DT.100791889 DT.101976511 DT.121166310 DT.100791888 DT.121166345 DT.91896374 DT.95318930 24/304 AceView cDNA sequences (see all 304
):BU626878 H16014 AI168068 AA375771 BM712939 BE389852 BF593454 AV708239 CB164755 AI127153 AU142320 CA308058 BM673910 CN482557 BQ948863 D25618 BV178824 AW172911 CB115318 BU517058 BP382141 BM458955 CD518204 BM564913
highest scoring ESTs for ACO1:Z11559 AA114872 AA120998 AA121537 AA122326 AA127701 AA156728 AA156988 AA448706 AA488407 Unigene Cluster for ACO1: Aconitase 1, soluble Hs.567229 [show with all ESTs]Unigene Representative Sequence: AB209480
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000379923
ENST00000309951
ENST00000379921
|
Expression for ACO1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ACO1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ACO1
1 / 2 / 3 3 probe-sets matching ACO1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GATAGGTCGG
SOURCE GeneReport for Unigene cluster: Hs.567229
Expression variation in blood from EXPOLDB for ACO1 |
Orthologs for ACO1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ACO1 gene from 5/21 species (see all 21
)
About this table Species with no ortholog for ACO1
ENSEMBL Gene Tree for ACO1 | Paralogs for ACO1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ACO1 gene
- IREB22 ACO22
|
SNPs/Variants for ACO1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ACO1 (up to first 250kb)
|
Disorders & Mutations for ACO1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 100880
10/12 Novoseek disease relationships for ACO1 gene (see all 12
)
About this table
|
Medical News for ACO1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ACO1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/212 PubMed articles for ACO1 gene (see all 212
):- Cloning of the cDNA encoding an RNA regulatory protein -- the human iron-responsive element-binding protein. (PubMed id 2172968)1, 2, 3, 4 Rouault T.A.... Klausner R.D. (1990)
- Homology between IRE-BP, a regulatory RNA-binding protein, aconitase, and isopropylmalate isomerase. (PubMed id 1903202)1, 3, 4 Hentze M.W. and Argos P. (1991)
- Expression of active iron regulatory factor from a full-length human cDNA by in vitro transcription/translation. (PubMed id 1738601)1, 3, 4 Hirling H....Kuehn L. (1992)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- A regulated RNA binding protein also possesses aconitase activity. (PubMed id 1946430)3, 4 Kaptain S.... Klausner R.D. (1991)
- Chromosomal localization of nucleic acid-binding proteins by affinity mapping: assignment of the IRE-binding protein gene to human chromosome 9. (PubMed id 2771641)2, 3 Hentze M.W....Klausner R.D. (1989)
- Effect of hypoxia on the binding and subcellular distribution of iron regulatory proteins. (PubMed id 17200797)1, 3 Christova T. and Templeton D.M. (2007)
- Folding and turnover of human iron regulatory protein 1 depend on its subcellular localization. (PubMed id 17244191)1, 3 Martelli A....Moulis J.M. (2007)
- Iron regulatory proteins 1 and 2 in human monocytes, macrophages and duodenum: expression and regulation in hereditary hemochromatosis and iron deficiency. (PubMed id 16503547)1, 3 Recalcati S....Cairo G. (2006)
- Down-regulation of liver iron-regulatory protein 1 in haemochromatosis. (PubMed id 12196178)1, 3 Neonaki M....Bomford A. (2002)
|
Search for ACO1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ACO1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ACO1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ACO1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| Wikipedia | http://en.wikipedia.org/wiki/Aconitase |
|
| | | About This Section
| --
| Services for ACO1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ACO1:

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Incremental update: 13 Oct 2009
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