Aliases for ACKR4 Gene
Aliases for ACKR4 Gene
External Ids for ACKR4 Gene
- HGNC: 1611
- Entrez Gene: 51554
- Ensembl: ENSG00000129048
- OMIM: 606065
- UniProtKB: Q9NPB9
Previous HGNC Symbols for ACKR4 Gene
- CCRL1
Previous GeneCards Identifiers for ACKR4 Gene
- GC03P132317
Summaries for ACKR4 Gene
-
The protein encoded by this gene is a member of the G protein-coupled receptor family, and is a receptor for C-C type chemokines. This receptor has been shown to bind dendritic cell- and T cell-activated chemokines including CCL19/ELC, CCL21/SLC, and CCL25/TECK. A pseudogene of this gene is found on chromosome 6. Alternatively spliced transcript variants encoding the same protein have been described. [provided by RefSeq, Jul 2013]
GeneCards Summary for ACKR4 Gene
ACKR4 (Atypical Chemokine Receptor 4) is a Protein Coding gene. Among its related pathways are Peptide ligand-binding receptors and Signaling by GPCR. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and chemokine receptor activity. An important paralog of this gene is CCR7.
UniProtKB/Swiss-Prot for ACKR4 Gene
-
Atypical chemokine receptor that controls chemokine levels and localization via high-affinity chemokine binding that is uncoupled from classic ligand-driven signal transduction cascades, resulting instead in chemokine sequestration, degradation, or transcytosis. Also known as interceptor (internalizing receptor) or chemokine-scavenging receptor or chemokine decoy receptor. Acts as a receptor for chemokines CCL2, CCL8, CCL13, CCL19, CCL21 and CCL25. Chemokine-binding does not activate G-protein-mediated signal transduction but instead induces beta-arrestin recruitment, leading to ligand internalization. Plays an important role in controlling the migration of immune and cancer cells that express chemokine receptors CCR7 and CCR9, by reducing the availability of CCL19, CCL21, and CCL25 through internalization. Negatively regulates CXCR3-induced chemotaxis. Regulates T-cell development in the thymus.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ACKR4 Gene
Genomics for ACKR4 Gene
GeneHancer (GH) Regulatory Elements for ACKR4 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH03I132596 | Promoter/Enhancer | 0.8 | EPDnew ENCODE | 550.8 | +0.2 | 203 | 1 | POLR2A | ACKR4 HSPA8P19 ACAD11 NPHP3-ACAD11 | |
GH03I132540 | Enhancer | 1.1 | FANTOM5 Ensembl ENCODE | 10.8 | -54.5 | -54524 | 3.5 | SAP130 JUN ZBTB40 RARA FOSL1 FOSL2 FOS IKZF2 HOMEZ TCF7L2 | UBA5 ACKR4 NPHP3 DNAJC13 | |
GH03I132535 | Enhancer | 0.8 | Ensembl ENCODE | 10.6 | -61.0 | -61022 | 1.3 | CTCF ZNF654 L3MBTL2 REST DMAP1 MNT RAD21 ZNF592 ZNF143 SMC3 | UBA5 ACAD11 ACKR4 DNAJC13 | |
GH03I132569 | Enhancer | 0.6 | ENCODE dbSUPER | 11.2 | -27.9 | -27905 | 0.2 | ZNF316 MAFK | ACKR4 ACAD11 DNAJC13 NPHP3-ACAD11 | |
GH03I132555 | Enhancer | 0.5 | ENCODE | 11.7 | -40.6 | -40590 | 2 | SOX6 IKZF1 VEZF1 MNT ZNF24 | ACKR4 UBA5 ACAD11 DNAJC13 |
Regulatory Element Products
Genomic Locations for ACKR4 Gene
- chr3:132,597,237-132,618,967
- (GRCh38/hg38)
- Size:
- 21,731 bases
- Orientation:
- Plus strand
- chr3:132,316,081-132,337,811
- (GRCh37/hg19)
Genomic View for ACKR4 Gene
- Cytogenetic band:
-
- 3q22.1 by Ensembl
- 3q22.1 by Entrez Gene
- 3q22.1 by HGNC


RefSeq DNA sequence for ACKR4 Gene
Proteins for ACKR4 Gene
-
Protein details for ACKR4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9NPB9-ACKR4_HUMAN
- Recommended name:
- Atypical chemokine receptor 4
- Protein Accession:
- Q9NPB9
- B2R9U7
Protein attributes for ACKR4 Gene
- Size:
- 350 amino acids
- Molecular mass:
- 39914 Da
- Quaternary structure:
-
- Forms heteromers with CXCR3. Interacts with ARRB1 and ARRB2.
Post-translational modifications for ACKR4 Gene
- The Ser/Thr residues in the C-terminal cytoplasmic tail may be phosphorylated.
- Glycosylation at Asn6 and Asn19
Other Protein References for ACKR4 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
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No data available for DME Specific Peptides for ACKR4 Gene
Domains & Families for ACKR4 Gene
Gene Families for ACKR4 Gene
- HGNC:
- IUPHAR :
- Human Protein Atlas (HPA):
-
- G-protein coupled receptors
- Predicted membrane proteins
Protein Domains for ACKR4 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for ACKR4 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9NPB9UniProtKB/Swiss-Prot:
ACKR4_HUMAN :- Belongs to the G-protein coupled receptor 1 family. Atypical chemokine receptor subfamily.
- Family:
-
- Belongs to the G-protein coupled receptor 1 family. Atypical chemokine receptor subfamily.
Function for ACKR4 Gene
Molecular function for ACKR4 Gene
- UniProtKB/Swiss-Prot Function:
- Atypical chemokine receptor that controls chemokine levels and localization via high-affinity chemokine binding that is uncoupled from classic ligand-driven signal transduction cascades, resulting instead in chemokine sequestration, degradation, or transcytosis. Also known as interceptor (internalizing receptor) or chemokine-scavenging receptor or chemokine decoy receptor. Acts as a receptor for chemokines CCL2, CCL8, CCL13, CCL19, CCL21 and CCL25. Chemokine-binding does not activate G-protein-mediated signal transduction but instead induces beta-arrestin recruitment, leading to ligand internalization. Plays an important role in controlling the migration of immune and cancer cells that express chemokine receptors CCR7 and CCR9, by reducing the availability of CCL19, CCL21, and CCL25 through internalization. Negatively regulates CXCR3-induced chemotaxis. Regulates T-cell development in the thymus.
Phenotypes From GWAS Catalog for ACKR4 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0004930 | G-protein coupled receptor activity | IEA | -- |
GO:0004950 | chemokine receptor activity | IDA | 23341447 |
GO:0005044 | scavenger receptor activity | IEA | -- |
GO:0005515 | protein binding | IPI | 23341447 |
GO:0019956 | chemokine binding | IEA | -- |
Phenotypes for ACKR4 Gene
- MGI mutant phenotypes for ACKR4:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for ACKR4:
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miRNA for ACKR4 Gene
- miRTarBase miRNAs that target ACKR4
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ACKR4 Gene
Localization for ACKR4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for ACKR4 Gene
- Early endosome. Recycling endosome. Cell membrane; Multi-pass membrane protein. Note=Predominantly localizes to endocytic vesicles, and upon stimulation by the ligand is internalized via caveolae. Once internalized, the ligand dissociates from the receptor, and is targeted to degradation while the receptor is recycled back to the cell membrane.
- Vesicles (3)
- Mitochondria (1)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005768 | endosome | IEA | -- |
GO:0005769 | early endosome | IEA | -- |
GO:0005886 | plasma membrane | TAS | -- |
GO:0005887 | integral component of plasma membrane | TAS | 10767544 |
GO:0016020 | membrane | IEA | -- |
Pathways & Interactions for ACKR4 Gene
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | Peptide ligand-binding receptors | ||
2 | Chemokine Superfamily Pathway: Human/Mouse Ligand-Receptor Interactions | ||
3 | Signaling by GPCR |
Pathways by source for ACKR4 Gene
1 BioSystems pathway for ACKR4 Gene
6 Reactome pathways for ACKR4 Gene
1 R&D Systems pathway for ACKR4 Gene
Interacting Proteins for ACKR4 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006898 | receptor-mediated endocytosis | IEA | -- |
GO:0006935 | chemotaxis | TAS,IEA | -- |
GO:0006955 | immune response | TAS | 10706668 |
GO:0007165 | signal transduction | IEA | -- |
GO:0007186 | G-protein coupled receptor signaling pathway | IEA,TAS | -- |
No data available for SIGNOR curated interactions for ACKR4 Gene
Transcripts for ACKR4 Gene
mRNA/cDNA for ACKR4 Gene
- (2) REFSEQ mRNAs :
- (25) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for ACKR4
-
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Expression for ACKR4 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Endothelium (Cardiovascular System)
NURSA nuclear receptor signaling pathways regulating expression of ACKR4 Gene:
ACKR4mRNA Expression by UniProt/SwissProt for ACKR4 Gene:
Q9NPB9-ACKR4_HUMANPrimer Products
-
OriGene qPCR primer pairs for ACKR4
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No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ACKR4 Gene
Orthologs for ACKR4 Gene
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | CCRL1 34 33 |
|
OneToOne | |
cow (Bos Taurus) |
Mammalia | ACKR4 33 |
|
||
CCRL1 34 |
|
OneToOne | |||
dog (Canis familiaris) |
Mammalia | ACKR4 33 34 |
|
||
mouse (Mus musculus) |
Mammalia | Ackr4 34 16 33 |
|
OneToOne | |
rat (Rattus norvegicus) |
Mammalia | Ackr4 33 |
|
||
oppossum (Monodelphis domestica) |
Mammalia | ACKR4 34 |
|
OneToOne | |
platypus (Ornithorhynchus anatinus) |
Mammalia | ACKR4 34 |
|
OneToOne | |
chicken (Gallus gallus) |
Aves | CCRL1 33 |
|
||
ACKR4 34 |
|
OneToOne | |||
lizard (Anolis carolinensis) |
Reptilia | ACKR4 34 |
|
OneToOne | |
tropical clawed frog (Silurana tropicalis) |
Amphibia | ccrl1 33 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | si:ch211-106h4.12 33 |
|
||
ackr4a 34 |
|
OneToMany | |||
ackr4b 34 |
|
OneToMany |
- Species where no ortholog for ACKR4 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for ACKR4 Gene
Paralogs for ACKR4 Gene
(31) SIMAP similar genes for ACKR4 Gene using alignment to 2 proteins:
Variants for ACKR4 Gene
SNP ID | Clin | Chr 03 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000006957 | -- | 132,598,059(+) | A/G | genic_upstream_transcript_variant, intron_variant | |
rs1000054354 | -- | 132,597,749(+) | C/T | genic_upstream_transcript_variant, intron_variant | |
rs1000847872 | -- | 132,599,532(+) | A/T | genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant | |
rs1001008231 | -- | 132,596,366(+) | C/A | upstream_transcript_variant | |
rs1001060487 | -- | 132,596,072(+) | C/A | upstream_transcript_variant |
Additional Variant Information for ACKR4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- ACKR4
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ACKR4 Gene
Disorders for ACKR4 Gene
Additional Disease Information for ACKR4
No disorders were found for ACKR4 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ACKR4 Gene
Publications for ACKR4 Gene
- Characterization of mouse CCX-CKR, a receptor for the lymphocyte-attracting chemokines TECK/mCCL25, SLC/mCCL21 and MIP-3beta/mCCL19: comparison to human CCX-CKR. (PMID: 11981810) Townson JR … Nibbs RJ (European journal of immunology 2002) 3 4 22 58
- Cutting edge: identification of a novel chemokine receptor that binds dendritic cell- and T cell-active chemokines including ELC, SLC, and TECK. (PMID: 10706668) Gosling J … Schall TJ (Journal of immunology (Baltimore, Md. : 1950) 2000) 3 4 22 58
- Cloning of CCRL1, an orphan seven transmembrane receptor related to chemokine receptors, expressed abundantly in the heart. (PMID: 10767544) Khoja H … Shyamala V (Gene 2000) 2 3 4 58
- Inhibition of CXCR3-mediated chemotaxis by the human chemokine receptor-like protein CCX-CKR. (PMID: 23121557) Vinet J … Boddeke HW (British journal of pharmacology 2013) 3 4 58
- β-Arrestin recruitment and G protein signaling by the atypical human chemokine decoy receptor CCX-CKR. (PMID: 23341447) Watts AO … Vischer HF (The Journal of biological chemistry 2013) 3 4 58
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for 64 available CCRL1 Antibodies ranked by validation data
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Sources for ACKR4 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
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