ACER2 Gene
protein-coding GIFtS : 52
GCID: GC09 P019408
alkaline ceramidase 2 (Previous name: N-acylsphingosine amidohydrolase 3-like ) (Previous symbol: ASAH3L )
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Aliasesfor ACER2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Alkaline Ceramidase 2 1 2 FLJ415871 ASAH3L1 2 3 ALKCDase22 N-Acylsphingosine Amidohydrolase 3-Like1 3 Ceramide Hydrolase2 Alkaline CDase 22 3 EC 3.5.1.233 AlkCDase 22 3 Acylsphingosine Deacylase 3-Like3 HaCER21
Export aliases for ACER2 gene to outside databases Previous GC identifer: GC09P019400
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Summariesfor ACER2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for ACER2 : The sphingolipid metabolite sphingosine-1-phosphate promotes cell proliferation and survival, whereas its precursor, sphingosine, has the opposite effect. The ceramidase ACER2 hydrolyzes very long chain ceramides to generate sphingosine (Xu et al., 2006 (PubMed 16940153)).(supplied by OMIM, Jul 2010) UniProtKB/Swiss-Prot: ACER2_HUMAN, Q5QJU3 Function : Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. Unsaturated long-chain ceramidesare the best substrates, saturated long-chain ceramides and unsaturated very long-chain ceramides are good substrates, whereas saturated very long-chain ceramides and short-chain ceramides were poor substrates. The substrate preference is D-erythro-C(18:1)-, C(20:1)-, C(20:4)-ceramide > D-erythro-C(16:0)-, C(18:0), C(20:0)-ceramide > D-erythro-C(24:1)-ceramide > D-erythro-C(12:0)-ceramide, D-erythro-C(14:0)-ceramides > D-erythro-C(24:0)-ceramide > D-erythro-C(6:0)-ceramide. Inhibits the maturation of protein glycosylation in the Golgi complex, including that of integrin beta-1 (ITGB1) and of LAMP1, by increasing the levels of sphingosine. Inhibits cell adhesion by reducing the level of ITGB1 in the cell surface. May have a role in cell proliferation and apoptosis that seems to depend on the balance between sphingosine and sphingosine-1-phosphate Gene Wiki entry for ACER2
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genomic Viewsfor ACER2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000009.11 NC_018920.1 NT_008413.18 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the ACER2 gene promoter: Elk-1 USF1 GATA-3 AP-1 LCR-F1 GATA-1 GATA-2 USF-1 FOXJ2 (long isoform) FOXJ2 Other transcription factors Search SABiosciences Chromatin IP Primers for ACER2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ACER2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9p22.1 Ensembl cytogenetic band: 9p22.1 HGNC cytogenetic band: 9p21.3 ACER2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09P019408: view genomic region
(about GC identifiers )
Start:
19,408,925 bp from pter
End:
19,452,500 bp from pter
Size:
43,576 bases
Orientation:
plus strand
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Proteinsfor ACER2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ACER2_HUMAN, Q5QJU3 (See
protein sequence )Recommended Name: Alkaline ceramidase 2 Size : 275 amino acids; 31309 Da
Subcellular location : Golgi apparatus membrane; Multi-pass membrane protein
Secondary accessions : A2A3R8 Q569G5 Q5VZR7 Q71RD2Alternative splicing : 3 isoforms : Q5QJU3-1 Q5QJU3-2 Q5QJU3-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for ACER2: NX_Q5QJU3 ACER2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001010887.2 ENSEMBL proteins: ENSP00000342609 ENSP00000369735 Reactome Protein details: Q5QJU3 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
ACER2 for ontologies About GeneDecksing ACER2 Antibody Products: Assay Products for ACER2:
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Protein
Domains / Familiesfor ACER2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ACER2 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q5QJU3 ProtoNet protein and cluster: Q5QJU3
1 Blocks protein family : IPB008901 Alkaline phytoceramidase UniProtKB/Swiss-Prot: ACER2_HUMAN, Q5QJU3 Similarity : Belongs to the alkaline ceramidase family
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Functionfor ACER2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: ACER2_HUMAN, Q5QJU3 Function : Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. Unsaturated long-chain ceramidesare the best substrates, saturated long-chain ceramides and unsaturated very long-chain ceramides are good substrates, whereas saturated very long-chain ceramides and short-chain ceramides were poor substrates. The substrate preference is D-erythro-C(18:1)-, C(20:1)-, C(20:4)-ceramide > D-erythro-C(16:0)-, C(18:0), C(20:0)-ceramide > D-erythro-C(24:1)-ceramide > D-erythro-C(12:0)-ceramide, D-erythro-C(14:0)-ceramides > D-erythro-C(24:0)-ceramide > D-erythro-C(6:0)-ceramide. Inhibits the maturation of protein glycosylation in the Golgi complex, including that of integrin beta-1 (ITGB1) and of LAMP1, by increasing the levels of sphingosine. Inhibits cell adhesion by reducing the level of ITGB1 in the cell surface. May have a role in cell proliferation and apoptosis that seems to depend on the balance between sphingosine and sphingosine-1-phosphate Catalytic activity : N-acylsphingosine + H(2)O = a carboxylate + sphingosineEnzyme regulation : Specifically activated by lumenal, but not cytosolic Ca(2+). Inhibited by Zn(2+) or Cu(2+). Mg(2+)or Mn(2+) have no effect on ceramidase activity Biophysicochemical properties : Kinetic parameters: KM=81 uM for D-erythro-C(24:1)-ceramide (at 37 degrees Celsius andpH 9.0); Vmax=27 pmol/min/mg enzyme with D-erythro-C(24:1)-ceramide as substrate; pH dependence: Optimum pH is 7.5-9.0; Enzyme Number (IUBMB): EC 3.5.1.23 1
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ACER2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ACER2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ACER2 (NM_001010887 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ACER2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ACER2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ACER2
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
ACER2 for ontologies About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Pathways & Interactionsfor ACER2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Sphingolipid metabolism 2 Metabolism 3 sphingosine and sphingosine-1-phosphate metabolism
Pathway sources See GeneCards unified pathways Show all pathways 1 BioSystems Pathway for ACER2 4
Reactome Pathways for ACER2 2
Kegg Pathways (Kegg details for ACER2) :
ACER2 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ACER2 STRING Interaction
Network Preview (showing 5 interactants - click image to see 21)5/21 Interacting proteins for ACER2 (ENSP00000342609 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 21 )About this table Gene Ontology (GO): 5/14 biological process terms (GO ID links to tree view) (see all 14 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0001953 negative regulation of cell-matrix adhesion
IDA 18945876 GO:0006644 phospholipid metabolic process
TAS -- GO:0006665 sphingolipid metabolic process
TAS -- GO:0006672 ceramide metabolic process
IEA -- GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process
IMP --
ACER2 for ontologies About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Drugs & Compoundsfor ACER2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for ACER2 10/123 HMDB Compounds for ACER2 (see all 123 ) About this table Search CenterWatch for drugs/clinical trials and news about ACER2
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Transcriptsfor ACER2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ACER2 gene: NM_001010887.2 Unigene Cluster for ACER2:
Alkaline ceramidase 2 Hs.41379 [show with all ESTs ] Unigene Representative Sequence: AK123581 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000340967 (uc003znx.1 uc003zny.1 uc003znz.1 ) ENST00000380376 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ACER2 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ACER2OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: ACER2 (NM_001010887 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ACER2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ACER2
Additional cDNA sequence: AF370405.1 AK123581.1 AY312516.1 BC092487.1
4 DOTS entries : DT.105839 DT.40290454
DT.100652251 DT.121154936 14 AceView cDNA sequences :
BX646596 BX112888 AI168043 AA309752 AK123581 AF370405 AI033878 BQ081995 CF593785 BX482955 BF839613 R96782 H90930 H90280 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for ACER2 About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b SP1 :                   SP2 :     -              
ECgene alternative splicing isoforms for ACER2
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Expression for ACER2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ACER2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image ACER2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Heart Endocardium Heart Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See ACER2 Protein Expression from SPIRE MOPED and PaxDB SOURCE GeneReport for Unigene cluster: Hs.41379 UniProtKB/Swiss-Prot: ACER2_HUMAN, Q5QJU3 Tissue specificity : Highly expressed in placenta SABiosciences Custom PCR Arrays for ACER2 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ACER2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat ACER2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ACER2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ACER2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ACER2
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Orthologsfor ACER2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for ACER2 gene from 8/22 species (see all 22 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
ACER21
alkaline ceramidase 2
80.85(n) 90.55(a)
 
427235 XM_424820.2 XP_424820.2
lizard (Anolis carolinensis)
Reptilia
ACER26
--
88(a)
1 ↔ 1
2(62424966-62450138)
African clawed frog (Xenopus laevis)
Amphibia
Xl.109892
Xenopus laevis transcribed sequence with weak similarity more
75.29(n)
 
BJ060795.1
zebrafish (Danio rerio)
Actinopterygii
LOC1003311791
alkaline ceramidase 2-like
73.06(n) 83.39(a)
 
100331179 XM_002663031.2 XP_002663077.1
fruit fly (Drosophila melanogaster)
Insecta
bwa1
brain washing
57.55(n) 49.61(a)
 
250736 NM_136176.2 NP_610020.1
worm (Caenorhabditis elegans)
Secernentea
CELE_W02F12.21
Protein W02F12.2
43.44(n) 29.53(a)
 
189124 NM_072296.4 NP_504697.2
thale cress (Arabidopsis thaliana)
eudicotyledons
ATCES16
dihydroceramidase
21(a)
1 → many
4(11797567-11799856)
rice (Oryza sativa)
Liliopsida
--
alkaline phytoceramidase, putative, expressed
24(a)
1 → many
3(28008018-28011928)
ENSEMBL Gene Tree for ACER2 (if available)TreeFam Gene Tree for ACER2 (if available)
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Paralogsfor ACER2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ACER2 gene ACER3 2 ACER1 2 1 SIMAP similar gene for ACER2 using alignment to 1 protein entry: ACER2_HUMAN :ACER1
ACER2 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for ACER2 PGOHUM00000240501
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genomic Variantsfor ACER2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 9 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for ACER2 (19408925 - 19452500 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for ACER2 2 CNVs : 95870 52762
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ACER2
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Disorders
/ Diseasesfor ACER2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ACER2 for disorders About GeneDecksing
OMIM gene information: 613492
OMIM disorders : --4 diseases for ACER2 : About MalaCards farber lipogranulomatosis lipogranulomatosis retinal degeneration retinitis 1 disease from the University of Copenhagen DISEASES database for ACER2 :Farber lipogranulomatosis Human Genome Epidemiology (HuGE) Navigator: ACER2 (1 document)Export disorders for ACER2 gene to outside databases
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Publicationsfor ACER2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ACER2 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with ACER2) Utopia : connect your pdf to the dynamic world of online information
Alkaline ceramidase 2 regulates beta1 integrin maturation and cell adhesion. (PubMed id 18945876) 1 , 2 , 3, 9 Sun W.... Mao C. (2009) Substrate specificity, membrane topology, and activit y regulation of human alkaline ceramidase 2 (ACER2). (PubMed id 20089856) 1 , 2 , 9 Sun W....Mao C. (2010) Golgi alkaline ceramidase regulates cell proliferation and survival by controlling levels of sphingosine and S1P. (PubMed id 16940153) 1 , 2 Xu R.... Mao C. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 1 , 2 Humphray S.J.... Dunham I. (2004) Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874) 1 , 2 Wan D....Gu J. (2004) Alkaline ceramidase 2 (ACER2) and its product dihydro sphingosine mediate the cytotoxicity of N-(4-hydroxyphenyl)retinamide in tumor cells. (PubMed id 20628055) 1 Mao Z....Mao C. (2010) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Alkaline ceramidase 3 (ACER3) hydrolyzes unsaturated long-chain ceramides, and its down-regulation inhibits both cell proliferation and apoptosis. (PubMed id 20068046) 9 Hu W....Mao C. (2010)
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
External Searches for ACER2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genome Databases showing ACER2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Other Databases showing ACER2 gene
(According to HUGE )
About This Section --
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Specialized Databases showing ACER2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for ACER2 Pharmacogenomics, SNPs, Pathways
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
About This Section Patent Information for ACER2 gene: Search GeneIP for patents involving ACER2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Productsfor ACER2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for ACER2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ACER2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ACER2 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ACER2 OriGene 3'-UTR Clone for ACER2 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ACER2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ACER2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ACER2 OriGene Custom Protein Services for ACER2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ACER2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ACER2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ACER2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ACER2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ACER2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ACER2
Search Tocris compounds for ACER2
ACER2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ACER2
Search ThermoFisher Antibodies for ACER2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ACER2
Jump to Section...
Aliases for ACER2
Databases for ACER2
Disorders / Diseases for ACER2
Domains / Families for ACER2
Drugs / Compounds for ACER2
Expression for ACER2
Function for ACER2
Genomic Views for ACER2
Intellectual Property for ACER2
Orthologs for ACER2
Paralogs for ACER2
Pathways / Interactions for ACER2
Products for ACER2
Proteins for ACER2
Publications for ACER2
Search Box for ACER2
Summaries for ACER2
Transcripts for ACER2
Variants for ACER2
TOP
BOTTOM